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MS021069 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS021069
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNA-directed RNA polymerase subunit alpha
Genome locationscaffold290:1000050..1000151
RNA-Seq ExpressionMS021069
SyntenyMS021069
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR036643 - DNA-directed RNA polymerase, insert domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AHM88931.1 RNA polymerase alpha subunit, partial [Lagenaria siceraria]2.1e-0891.18Show/hide
Query:  TRNASICVKGPGCVIAQDIILPPSVEIVDNTRHI
        TR+ASICVKGPGCV AQDIILPPSVEIVDNT+HI
Subjt:  TRNASICVKGPGCVIAQDIILPPSVEIVDNTRHI
AHM90997.1 RNA polymerase alpha subunit [Lagenaria siceraria]2.1e-0891.18Show/hide
Query:  TRNASICVKGPGCVIAQDIILPPSVEIVDNTRHI
        TR+ASICVKGPGCV AQDIILPPSVEIVDNT+HI
Subjt:  TRNASICVKGPGCVIAQDIILPPSVEIVDNTRHI
YP_009326021.1 RNA polymerase alpha subunit [Citrullus lanatus]2.1e-0891.18Show/hide
Query:  TRNASICVKGPGCVIAQDIILPPSVEIVDNTRHI
        TR+ASICVKGPGCV AQDIILPPSVEIVDNT+HI
Subjt:  TRNASICVKGPGCVIAQDIILPPSVEIVDNTRHI
YP_009456178.1 RNA polymerase alpha subunit [Lagenaria siceraria]2.1e-0891.18Show/hide
Query:  TRNASICVKGPGCVIAQDIILPPSVEIVDNTRHI
        TR+ASICVKGPGCV AQDIILPPSVEIVDNT+HI
Subjt:  TRNASICVKGPGCVIAQDIILPPSVEIVDNTRHI
YP_009752867.1 RNA polymerase subunit alpha [Baijiania yunnanensis]2.1e-0891.18Show/hide
Query:  TRNASICVKGPGCVIAQDIILPPSVEIVDNTRHI
        TR+ASICVKGPGCV AQDIILPPSVEIVDNT+HI
Subjt:  TRNASICVKGPGCVIAQDIILPPSVEIVDNTRHI
TrEMBL top hitse value%identityAlignment
A0A1P8LEA2 DNA-directed RNA polymerase subunit alpha1.0e-0891.18Show/hide
Query:  TRNASICVKGPGCVIAQDIILPPSVEIVDNTRHI
        TR+ASICVKGPGCV AQDIILPPSVEIVDNT+HI
Subjt:  TRNASICVKGPGCVIAQDIILPPSVEIVDNTRHI
A0A1X9Q1P4 DNA-directed RNA polymerase subunit alpha1.0e-0891.18Show/hide
Query:  TRNASICVKGPGCVIAQDIILPPSVEIVDNTRHI
        TR+ASICVKGPGCV AQDIILPPSVEIVDNT+HI
Subjt:  TRNASICVKGPGCVIAQDIILPPSVEIVDNTRHI
A0A218KG62 DNA-directed RNA polymerase subunit alpha1.0e-0891.18Show/hide
Query:  TRNASICVKGPGCVIAQDIILPPSVEIVDNTRHI
        TR+ASICVKGPGCV AQDIILPPSVEIVDNT+HI
Subjt:  TRNASICVKGPGCVIAQDIILPPSVEIVDNTRHI
A0A249RZB5 DNA-directed RNA polymerase subunit alpha1.0e-0891.18Show/hide
Query:  TRNASICVKGPGCVIAQDIILPPSVEIVDNTRHI
        TR+ASICVKGPGCV AQDIILPPSVEIVDNT+HI
Subjt:  TRNASICVKGPGCVIAQDIILPPSVEIVDNTRHI
A0A6H0ETS7 DNA-directed RNA polymerase subunit alpha1.0e-0891.18Show/hide
Query:  TRNASICVKGPGCVIAQDIILPPSVEIVDNTRHI
        TR+ASICVKGPGCV AQDIILPPSVEIVDNT+HI
Subjt:  TRNASICVKGPGCVIAQDIILPPSVEIVDNTRHI
SwissProt top hitse value%identityAlignment
A4GYU3 DNA-directed RNA polymerase subunit alpha1.4e-1085.29Show/hide
Query:  TRNASICVKGPGCVIAQDIILPPSVEIVDNTRHI
        T +ASICVKGPGCV AQDIILPPSVEI+DNT+HI
Subjt:  TRNASICVKGPGCVIAQDIILPPSVEIVDNTRHI
Q14FC5 DNA-directed RNA polymerase subunit alpha3.6e-1188.24Show/hide
Query:  TRNASICVKGPGCVIAQDIILPPSVEIVDNTRHI
        T NASICVKGPGCV AQDIILPPSVEI+DNT+HI
Subjt:  TRNASICVKGPGCVIAQDIILPPSVEIVDNTRHI
Q49KW6 DNA-directed RNA polymerase subunit alpha3.0e-1088.24Show/hide
Query:  TRNASICVKGPGCVIAQDIILPPSVEIVDNTRHI
        TRNASICVKGPGCV AQDIILP SVEIVDNT++I
Subjt:  TRNASICVKGPGCVIAQDIILPPSVEIVDNTRHI
Q4VZK3 DNA-directed RNA polymerase subunit alpha2.7e-1191.18Show/hide
Query:  TRNASICVKGPGCVIAQDIILPPSVEIVDNTRHI
        TR+ASICVKGPGCV AQDIILPPSVEIVDNT+HI
Subjt:  TRNASICVKGPGCVIAQDIILPPSVEIVDNTRHI
Q9MTJ3 DNA-directed RNA polymerase subunit alpha1.4e-1085.29Show/hide
Query:  TRNASICVKGPGCVIAQDIILPPSVEIVDNTRHI
        T NASICVKGPGCV AQDI+LPPSVEI+DNT+HI
Subjt:  TRNASICVKGPGCVIAQDIILPPSVEIVDNTRHI
Arabidopsis top hitse value%identityAlignment
ATCG00740.1 RNA polymerase subunit alpha1.5e-0973.53Show/hide
Query:  TRNASICVKGPGCVIAQDIILPPSVEIVDNTRHI
        TRNA ICV+GPG + A+DIILPP+VEI+DNT+HI
Subjt:  TRNASICVKGPGCVIAQDIILPPSVEIVDNTRHI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ACTCGTAATGCATCTATTTGTGTCAAGGGTCCTGGATGCGTAATAGCTCAAGACATAATCTTACCACCTTCTGTGGAAATAGTTGATAATACACGGCATATC
mRNA sequenceShow/hide mRNA sequence
ACTCGTAATGCATCTATTTGTGTCAAGGGTCCTGGATGCGTAATAGCTCAAGACATAATCTTACCACCTTCTGTGGAAATAGTTGATAATACACGGCATATC
Protein sequenceShow/hide protein sequence
TRNASICVKGPGCVIAQDIILPPSVEIVDNTRHI