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MS021088 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS021088
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionSurvival motor neuron
Genome locationscaffold290:1140490..1142680
RNA-Seq ExpressionMS021088
SyntenyMS021088
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0016020 - membrane (cellular component)
InterPro domainsIPR040424 - Survival motor neuron-like protein 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022145362.1 uncharacterized protein LOC111014833 isoform X1 [Momordica charantia]2.1e-10397.47Show/hide
Query:  MLLDDSALVTAMEEAMLKYKIMHGHEIFQISVEGGEVFNGGGESDEPKRSVNRGGDEKSNIEANNVNFEVDEITNTSPNNENISVEPCPISCADFSDALH
        MLLDDSALVTAMEEAMLKYKIMHGHEIFQISVEGGE FNGGGESDEPK    RGGDEKSNIEANNVNFEVDEITNTSPNNENISVEPCPISCADFSDALH
Subjt:  MLLDDSALVTAMEEAMLKYKIMHGHEIFQISVEGGEVFNGGGESDEPKRSVNRGGDEKSNIEANNVNFEVDEITNTSPNNENISVEPCPISCADFSDALH

Query:  VKETQQGPIEDSNLNLKGAEGYNKLLEQYYELEEKRQKVLDQLYHGGWNYDDVSAGSSVGTQWGTSSAYQEHPVPASQTSHNHAISTCWPSSYPIPVG
        VKETQQGPIEDSNLNLKGAEGYNKLLEQYYELEEKRQKVLDQLYHGGWNYDDVSAGSSVGTQWGTSSAYQEHPVPASQTSHNHAISTCWPSSYPIPVG
Subjt:  VKETQQGPIEDSNLNLKGAEGYNKLLEQYYELEEKRQKVLDQLYHGGWNYDDVSAGSSVGTQWGTSSAYQEHPVPASQTSHNHAISTCWPSSYPIPVG

XP_022145364.1 uncharacterized protein LOC111014833 isoform X2 [Momordica charantia]2.1e-10397.47Show/hide
Query:  MLLDDSALVTAMEEAMLKYKIMHGHEIFQISVEGGEVFNGGGESDEPKRSVNRGGDEKSNIEANNVNFEVDEITNTSPNNENISVEPCPISCADFSDALH
        MLLDDSALVTAMEEAMLKYKIMHGHEIFQISVEGGE FNGGGESDEPK    RGGDEKSNIEANNVNFEVDEITNTSPNNENISVEPCPISCADFSDALH
Subjt:  MLLDDSALVTAMEEAMLKYKIMHGHEIFQISVEGGEVFNGGGESDEPKRSVNRGGDEKSNIEANNVNFEVDEITNTSPNNENISVEPCPISCADFSDALH

Query:  VKETQQGPIEDSNLNLKGAEGYNKLLEQYYELEEKRQKVLDQLYHGGWNYDDVSAGSSVGTQWGTSSAYQEHPVPASQTSHNHAISTCWPSSYPIPVG
        VKETQQGPIEDSNLNLKGAEGYNKLLEQYYELEEKRQKVLDQLYHGGWNYDDVSAGSSVGTQWGTSSAYQEHPVPASQTSHNHAISTCWPSSYPIPVG
Subjt:  VKETQQGPIEDSNLNLKGAEGYNKLLEQYYELEEKRQKVLDQLYHGGWNYDDVSAGSSVGTQWGTSSAYQEHPVPASQTSHNHAISTCWPSSYPIPVG

XP_022145365.1 uncharacterized protein LOC111014833 isoform X3 [Momordica charantia]2.1e-10397.47Show/hide
Query:  MLLDDSALVTAMEEAMLKYKIMHGHEIFQISVEGGEVFNGGGESDEPKRSVNRGGDEKSNIEANNVNFEVDEITNTSPNNENISVEPCPISCADFSDALH
        MLLDDSALVTAMEEAMLKYKIMHGHEIFQISVEGGE FNGGGESDEPK    RGGDEKSNIEANNVNFEVDEITNTSPNNENISVEPCPISCADFSDALH
Subjt:  MLLDDSALVTAMEEAMLKYKIMHGHEIFQISVEGGEVFNGGGESDEPKRSVNRGGDEKSNIEANNVNFEVDEITNTSPNNENISVEPCPISCADFSDALH

Query:  VKETQQGPIEDSNLNLKGAEGYNKLLEQYYELEEKRQKVLDQLYHGGWNYDDVSAGSSVGTQWGTSSAYQEHPVPASQTSHNHAISTCWPSSYPIPVG
        VKETQQGPIEDSNLNLKGAEGYNKLLEQYYELEEKRQKVLDQLYHGGWNYDDVSAGSSVGTQWGTSSAYQEHPVPASQTSHNHAISTCWPSSYPIPVG
Subjt:  VKETQQGPIEDSNLNLKGAEGYNKLLEQYYELEEKRQKVLDQLYHGGWNYDDVSAGSSVGTQWGTSSAYQEHPVPASQTSHNHAISTCWPSSYPIPVG

XP_023551933.1 uncharacterized protein LOC111809760 isoform X1 [Cucurbita pepo subsp. pepo]7.7e-6667.49Show/hide
Query:  DKMLLDDSALVTAMEEAMLKYKIMHGHEIFQISVEGGEVFNGGGESDEPKRSVNRGGDEKSNIEANNVNFEVDEITNTSPNNENISVEPCPISCADFSDA
        D+M  DDS +V AM+EAMLKYK MHG+E+ ++S EGG VFNG G+SDEP+RSV    DE+S I AN+V FEV+E TNTS   ENISVEPCPISC DFS A
Subjt:  DKMLLDDSALVTAMEEAMLKYKIMHGHEIFQISVEGGEVFNGGGESDEPKRSVNRGGDEKSNIEANNVNFEVDEITNTSPNNENISVEPCPISCADFSDA

Query:  LHVKETQQGPIEDSNLNLKGAEGYNKLLEQYYELEEKRQKVLDQLYH---GGWNYDDVSAGSSVGTQWGTSSAYQEHPVPASQTSHNHAISTCWPSSYPI
        L+VKET+Q  ++DSNLNLKG +GYN+LL+QYYELEEKRQKVL+QLY    GGWNY DV AGS +G QWGTS+AYQEHPV ASQ S N AI +  PSSYP+
Subjt:  LHVKETQQGPIEDSNLNLKGAEGYNKLLEQYYELEEKRQKVLDQLYH---GGWNYDDVSAGSSVGTQWGTSSAYQEHPVPASQTSHNHAISTCWPSSYPI

Query:  PVG
          G
Subjt:  PVG

XP_023551935.1 uncharacterized protein LOC111809760 isoform X2 [Cucurbita pepo subsp. pepo]7.7e-6667.49Show/hide
Query:  DKMLLDDSALVTAMEEAMLKYKIMHGHEIFQISVEGGEVFNGGGESDEPKRSVNRGGDEKSNIEANNVNFEVDEITNTSPNNENISVEPCPISCADFSDA
        D+M  DDS +V AM+EAMLKYK MHG+E+ ++S EGG VFNG G+SDEP+RSV    DE+S I AN+V FEV+E TNTS   ENISVEPCPISC DFS A
Subjt:  DKMLLDDSALVTAMEEAMLKYKIMHGHEIFQISVEGGEVFNGGGESDEPKRSVNRGGDEKSNIEANNVNFEVDEITNTSPNNENISVEPCPISCADFSDA

Query:  LHVKETQQGPIEDSNLNLKGAEGYNKLLEQYYELEEKRQKVLDQLYH---GGWNYDDVSAGSSVGTQWGTSSAYQEHPVPASQTSHNHAISTCWPSSYPI
        L+VKET+Q  ++DSNLNLKG +GYN+LL+QYYELEEKRQKVL+QLY    GGWNY DV AGS +G QWGTS+AYQEHPV ASQ S N AI +  PSSYP+
Subjt:  LHVKETQQGPIEDSNLNLKGAEGYNKLLEQYYELEEKRQKVLDQLYH---GGWNYDDVSAGSSVGTQWGTSSAYQEHPVPASQTSHNHAISTCWPSSYPI

Query:  PVG
          G
Subjt:  PVG

TrEMBL top hitse value%identityAlignment
A0A6J1CU98 uncharacterized protein LOC111014833 isoform X31.0e-10397.47Show/hide
Query:  MLLDDSALVTAMEEAMLKYKIMHGHEIFQISVEGGEVFNGGGESDEPKRSVNRGGDEKSNIEANNVNFEVDEITNTSPNNENISVEPCPISCADFSDALH
        MLLDDSALVTAMEEAMLKYKIMHGHEIFQISVEGGE FNGGGESDEPK    RGGDEKSNIEANNVNFEVDEITNTSPNNENISVEPCPISCADFSDALH
Subjt:  MLLDDSALVTAMEEAMLKYKIMHGHEIFQISVEGGEVFNGGGESDEPKRSVNRGGDEKSNIEANNVNFEVDEITNTSPNNENISVEPCPISCADFSDALH

Query:  VKETQQGPIEDSNLNLKGAEGYNKLLEQYYELEEKRQKVLDQLYHGGWNYDDVSAGSSVGTQWGTSSAYQEHPVPASQTSHNHAISTCWPSSYPIPVG
        VKETQQGPIEDSNLNLKGAEGYNKLLEQYYELEEKRQKVLDQLYHGGWNYDDVSAGSSVGTQWGTSSAYQEHPVPASQTSHNHAISTCWPSSYPIPVG
Subjt:  VKETQQGPIEDSNLNLKGAEGYNKLLEQYYELEEKRQKVLDQLYHGGWNYDDVSAGSSVGTQWGTSSAYQEHPVPASQTSHNHAISTCWPSSYPIPVG

A0A6J1CV09 uncharacterized protein LOC111014833 isoform X21.0e-10397.47Show/hide
Query:  MLLDDSALVTAMEEAMLKYKIMHGHEIFQISVEGGEVFNGGGESDEPKRSVNRGGDEKSNIEANNVNFEVDEITNTSPNNENISVEPCPISCADFSDALH
        MLLDDSALVTAMEEAMLKYKIMHGHEIFQISVEGGE FNGGGESDEPK    RGGDEKSNIEANNVNFEVDEITNTSPNNENISVEPCPISCADFSDALH
Subjt:  MLLDDSALVTAMEEAMLKYKIMHGHEIFQISVEGGEVFNGGGESDEPKRSVNRGGDEKSNIEANNVNFEVDEITNTSPNNENISVEPCPISCADFSDALH

Query:  VKETQQGPIEDSNLNLKGAEGYNKLLEQYYELEEKRQKVLDQLYHGGWNYDDVSAGSSVGTQWGTSSAYQEHPVPASQTSHNHAISTCWPSSYPIPVG
        VKETQQGPIEDSNLNLKGAEGYNKLLEQYYELEEKRQKVLDQLYHGGWNYDDVSAGSSVGTQWGTSSAYQEHPVPASQTSHNHAISTCWPSSYPIPVG
Subjt:  VKETQQGPIEDSNLNLKGAEGYNKLLEQYYELEEKRQKVLDQLYHGGWNYDDVSAGSSVGTQWGTSSAYQEHPVPASQTSHNHAISTCWPSSYPIPVG

A0A6J1CWC9 uncharacterized protein LOC111014833 isoform X11.0e-10397.47Show/hide
Query:  MLLDDSALVTAMEEAMLKYKIMHGHEIFQISVEGGEVFNGGGESDEPKRSVNRGGDEKSNIEANNVNFEVDEITNTSPNNENISVEPCPISCADFSDALH
        MLLDDSALVTAMEEAMLKYKIMHGHEIFQISVEGGE FNGGGESDEPK    RGGDEKSNIEANNVNFEVDEITNTSPNNENISVEPCPISCADFSDALH
Subjt:  MLLDDSALVTAMEEAMLKYKIMHGHEIFQISVEGGEVFNGGGESDEPKRSVNRGGDEKSNIEANNVNFEVDEITNTSPNNENISVEPCPISCADFSDALH

Query:  VKETQQGPIEDSNLNLKGAEGYNKLLEQYYELEEKRQKVLDQLYHGGWNYDDVSAGSSVGTQWGTSSAYQEHPVPASQTSHNHAISTCWPSSYPIPVG
        VKETQQGPIEDSNLNLKGAEGYNKLLEQYYELEEKRQKVLDQLYHGGWNYDDVSAGSSVGTQWGTSSAYQEHPVPASQTSHNHAISTCWPSSYPIPVG
Subjt:  VKETQQGPIEDSNLNLKGAEGYNKLLEQYYELEEKRQKVLDQLYHGGWNYDDVSAGSSVGTQWGTSSAYQEHPVPASQTSHNHAISTCWPSSYPIPVG

A0A6J1HK48 uncharacterized protein LOC111465241 isoform X28.3e-6667.98Show/hide
Query:  DKMLLDDSALVTAMEEAMLKYKIMHGHEIFQISVEGGEVFNGGGESDEPKRSVNRGGDEKSNIEANNVNFEVDEITNTSPNNENISVEPCPISCADFSDA
        D+M  DDS +V AM+EAMLKYK MHG++I ++S EGG VFNG G+SDEP+RSV    DE+S I AN+V FEV+E  NTS   ENISVEPCPISC DFS A
Subjt:  DKMLLDDSALVTAMEEAMLKYKIMHGHEIFQISVEGGEVFNGGGESDEPKRSVNRGGDEKSNIEANNVNFEVDEITNTSPNNENISVEPCPISCADFSDA

Query:  LHVKETQQGPIEDSNLNLKGAEGYNKLLEQYYELEEKRQKVLDQLYH---GGWNYDDVSAGSSVGTQWGTSSAYQEHPVPASQTSHNHAISTCWPSSYPI
        L+VKET+Q  IEDSNLNL+G +GYN+LL+QYYELEEKRQKVL+QLY    GGWNY DV AGS +G QWGTS+AYQEHPV ASQ S N AI +  PSSYPI
Subjt:  LHVKETQQGPIEDSNLNLKGAEGYNKLLEQYYELEEKRQKVLDQLYH---GGWNYDDVSAGSSVGTQWGTSSAYQEHPVPASQTSHNHAISTCWPSSYPI

Query:  PVG
          G
Subjt:  PVG

A0A6J1HLH3 uncharacterized protein LOC111465241 isoform X18.3e-6667.98Show/hide
Query:  DKMLLDDSALVTAMEEAMLKYKIMHGHEIFQISVEGGEVFNGGGESDEPKRSVNRGGDEKSNIEANNVNFEVDEITNTSPNNENISVEPCPISCADFSDA
        D+M  DDS +V AM+EAMLKYK MHG++I ++S EGG VFNG G+SDEP+RSV    DE+S I AN+V FEV+E  NTS   ENISVEPCPISC DFS A
Subjt:  DKMLLDDSALVTAMEEAMLKYKIMHGHEIFQISVEGGEVFNGGGESDEPKRSVNRGGDEKSNIEANNVNFEVDEITNTSPNNENISVEPCPISCADFSDA

Query:  LHVKETQQGPIEDSNLNLKGAEGYNKLLEQYYELEEKRQKVLDQLYH---GGWNYDDVSAGSSVGTQWGTSSAYQEHPVPASQTSHNHAISTCWPSSYPI
        L+VKET+Q  IEDSNLNL+G +GYN+LL+QYYELEEKRQKVL+QLY    GGWNY DV AGS +G QWGTS+AYQEHPV ASQ S N AI +  PSSYPI
Subjt:  LHVKETQQGPIEDSNLNLKGAEGYNKLLEQYYELEEKRQKVLDQLYH---GGWNYDDVSAGSSVGTQWGTSSAYQEHPVPASQTSHNHAISTCWPSSYPI

Query:  PVG
          G
Subjt:  PVG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ACGGCTCCAGACAAAATGCTTTTGGATGATTCAGCTCTTGTGACAGCCATGGAAGAAGCCATGTTGAAGTACAAGATAATGCATGGACATGAAATCTTCCAGATTTCAGT
CGAGGGAGGAGAAGTGTTTAACGGTGGCGGTGAGAGTGACGAGCCAAAAAGGTCCGTAAACAGGGGTGGAGATGAAAAGAGCAATATTGAAGCAAATAATGTTAACTTTG
AAGTCGATGAGATTACAAATACCTCACCAAATAATGAAAATATCAGCGTAGAGCCATGTCCTATATCTTGTGCGGATTTTTCTGATGCTCTACATGTGAAAGAGACGCAA
CAGGGTCCCATTGAGGACTCCAATTTAAATCTAAAAGGTGCAGAGGGCTATAACAAGCTACTTGAGCAGTATTATGAGCTTGAGGAGAAGAGGCAGAAGGTTCTAGACCA
GCTTTATCATGGTGGTTGGAATTATGACGATGTCAGTGCAGGATCTAGCGTCGGAACTCAATGGGGAACATCTTCTGCTTATCAAGAACACCCAGTCCCTGCAAGCCAAA
CTTCTCATAACCATGCAATTTCCACCTGTTGGCCCTCCAGTTATCCAATTCCAGTTGGTATG
mRNA sequenceShow/hide mRNA sequence
ACGGCTCCAGACAAAATGCTTTTGGATGATTCAGCTCTTGTGACAGCCATGGAAGAAGCCATGTTGAAGTACAAGATAATGCATGGACATGAAATCTTCCAGATTTCAGT
CGAGGGAGGAGAAGTGTTTAACGGTGGCGGTGAGAGTGACGAGCCAAAAAGGTCCGTAAACAGGGGTGGAGATGAAAAGAGCAATATTGAAGCAAATAATGTTAACTTTG
AAGTCGATGAGATTACAAATACCTCACCAAATAATGAAAATATCAGCGTAGAGCCATGTCCTATATCTTGTGCGGATTTTTCTGATGCTCTACATGTGAAAGAGACGCAA
CAGGGTCCCATTGAGGACTCCAATTTAAATCTAAAAGGTGCAGAGGGCTATAACAAGCTACTTGAGCAGTATTATGAGCTTGAGGAGAAGAGGCAGAAGGTTCTAGACCA
GCTTTATCATGGTGGTTGGAATTATGACGATGTCAGTGCAGGATCTAGCGTCGGAACTCAATGGGGAACATCTTCTGCTTATCAAGAACACCCAGTCCCTGCAAGCCAAA
CTTCTCATAACCATGCAATTTCCACCTGTTGGCCCTCCAGTTATCCAATTCCAGTTGGTATG
Protein sequenceShow/hide protein sequence
TAPDKMLLDDSALVTAMEEAMLKYKIMHGHEIFQISVEGGEVFNGGGESDEPKRSVNRGGDEKSNIEANNVNFEVDEITNTSPNNENISVEPCPISCADFSDALHVKETQ
QGPIEDSNLNLKGAEGYNKLLEQYYELEEKRQKVLDQLYHGGWNYDDVSAGSSVGTQWGTSSAYQEHPVPASQTSHNHAISTCWPSSYPIPVGM