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MS021179 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS021179
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionE3 ubiquitin-protein ligase RNF34
Genome locationscaffold192:129964..131593
RNA-Seq ExpressionMS021179
SyntenyMS021179
Gene Ontology termsGO:0000492 - box C/D snoRNP assembly (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0062064 - box C/D snoRNP complex binding (molecular function)
InterPro domainsIPR027921 - NOP protein chaperone 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004147238.2 uncharacterized protein LOC101206707 isoform X2 [Cucumis sativus]5.3e-6779.31Show/hide
Query:  MQRASKDLLYLERKNLSSSSLESSLLVCKKDSTSKQPCRNEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLM
        M+  SKDLLYLERK+LSSSSLESSLLVCKK+STSK P RNEKPIT  ASKS VLGRVKDFLGVISEANKKLQ+D+K+N+EKYDIEALDGNESEVI++DLM
Subjt:  MQRASKDLLYLERKNLSSSSLESSLLVCKKDSTSKQPCRNEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLM

Query:  LGIADLHTPEAVAAAESAIVGNQPVIPLTCSSSSESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSKSKKTSRSSKSKRKGKSIKRPKIQ
        LGIADLHTPEAV AAESAI+GN PVIPLTC SSSESESEESS DSI+SD D DD++K  +Q +D SNR SV  KRS S+KTS  SKSK KGKS KRPKIQ
Subjt:  LGIADLHTPEAVAAAESAIVGNQPVIPLTCSSSSESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSKSKKTSRSSKSKRKGKSIKRPKIQ

Query:  ELS
         LS
Subjt:  ELS

XP_008448773.1 PREDICTED: uncharacterized protein LOC103490838 [Cucumis melo]3.1e-6778.33Show/hide
Query:  MQRASKDLLYLERKNLSSSSLESSLLVCKKDSTSKQPCRNEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLM
        M+ ASKDLL+LERK+LS+SSLESSLLVCKK+STSK+PCRNEKPIT  ASKS VLGRV+DFLGVISEANKKLQ+D+K+N++KYDIEALDGNESEVI++DLM
Subjt:  MQRASKDLLYLERKNLSSSSLESSLLVCKKDSTSKQPCRNEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLM

Query:  LGIADLHTPEAVAAAESAIVGNQPVIPLTCSSSSESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSKSKKTSRSSKSKRKGKSIKRPKIQ
        LGIADLHTPEAVAAAESAI+GN PVIPLTC SSSESESEESS DSI+SD D +D++K  +QN+D SNR SV  KRS S+K S  SKSK KGKS KRPKIQ
Subjt:  LGIADLHTPEAVAAAESAIVGNQPVIPLTCSSSSESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSKSKKTSRSSKSKRKGKSIKRPKIQ

Query:  ELS
         LS
Subjt:  ELS

XP_022155495.1 uncharacterized protein LOC111022627 [Momordica charantia]1.5e-9399.51Show/hide
Query:  MQRASKDLLYLERKNLSSSSLESSLLVCKKDSTSKQPCRNEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLM
        MQRASKDLLYLERKNLSSSSLESSLLVCKKDSTSKQPCRNEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLM
Subjt:  MQRASKDLLYLERKNLSSSSLESSLLVCKKDSTSKQPCRNEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLM

Query:  LGIADLHTPEAVAAAESAIVGNQPVIPLTCSSSSESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSKSKKTSRSSKSKRKGKSIKRPKIQ
        LG+ADLHTPEAVAAAESAIVGNQPVIPLTCSSSSESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSKSKKTSRSSKSKRKGKSIKRPKIQ
Subjt:  LGIADLHTPEAVAAAESAIVGNQPVIPLTCSSSSESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSKSKKTSRSSKSKRKGKSIKRPKIQ

Query:  ELS
        ELS
Subjt:  ELS

XP_023539679.1 uncharacterized protein LOC111800292 isoform X1 [Cucurbita pepo subsp. pepo]2.4e-6777.18Show/hide
Query:  MQRASKDLLYLERKNLSSSSLESSLLVCKKDSTSKQPCRNEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLM
        M+ ASKDLL LERK+L SSSLESSLLVCKK+STSK+PCRNEKPIT  A KSQVLGRVKDFLGV+SEANKKLQLDAKD++EKYDIEAL+G+ESEVIE+DLM
Subjt:  MQRASKDLLYLERKNLSSSSLESSLLVCKKDSTSKQPCRNEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLM

Query:  LGIADLHTPEAVAAAESAIVGNQPVIPLTC---SSSSESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSKSKKTSRSSKSKRKGKSIKRP
        LGIADLHTPEAVAAAESAI+GNQPVIPL C   SSSSESESEE+S DSI+SD++ DD++K  N+N+D  NR SV  KRSKS+KT+  S+SK KGKS KRP
Subjt:  LGIADLHTPEAVAAAESAIVGNQPVIPLTC---SSSSESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSKSKKTSRSSKSKRKGKSIKRP

Query:  KIQELS
        +I ELS
Subjt:  KIQELS

XP_038903017.1 uncharacterized protein LOC120089721 [Benincasa hispida]7.2e-7283.08Show/hide
Query:  RASKDLLYLERKNLSSSSLESSLLVCKKDSTSKQPCRNEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLMLG
        R SKDLLYLERK+LSSSSLESSLLVCKK+STSK+P RNEKPIT  ASKS VLGRVKDFLGVISEANKKLQ+DAKDN+EKYDIEALDGNES+VIE+DLMLG
Subjt:  RASKDLLYLERKNLSSSSLESSLLVCKKDSTSKQPCRNEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLMLG

Query:  IADLHTPEAVAAAESAIVGNQPVIPLTCSSSSESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSKSKKTSRSSKSKRKGKSIKRPKIQEL
        IADLHTPEAVAAAESAI+GNQPVIPLTCSSSSESESEESS DSI+S+D+ DD++K  +QN+DHSNRSSV  KRS S+KTS  SKSK K KS KRPKI EL
Subjt:  IADLHTPEAVAAAESAIVGNQPVIPLTCSSSSESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSKSKKTSRSSKSKRKGKSIKRPKIQEL

Query:  S
        S
Subjt:  S

TrEMBL top hitse value%identityAlignment
A0A0A0L448 Uncharacterized protein2.6e-6779.31Show/hide
Query:  MQRASKDLLYLERKNLSSSSLESSLLVCKKDSTSKQPCRNEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLM
        M+  SKDLLYLERK+LSSSSLESSLLVCKK+STSK P RNEKPIT  ASKS VLGRVKDFLGVISEANKKLQ+D+K+N+EKYDIEALDGNESEVI++DLM
Subjt:  MQRASKDLLYLERKNLSSSSLESSLLVCKKDSTSKQPCRNEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLM

Query:  LGIADLHTPEAVAAAESAIVGNQPVIPLTCSSSSESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSKSKKTSRSSKSKRKGKSIKRPKIQ
        LGIADLHTPEAV AAESAI+GN PVIPLTC SSSESESEESS DSI+SD D DD++K  +Q +D SNR SV  KRS S+KTS  SKSK KGKS KRPKIQ
Subjt:  LGIADLHTPEAVAAAESAIVGNQPVIPLTCSSSSESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSKSKKTSRSSKSKRKGKSIKRPKIQ

Query:  ELS
         LS
Subjt:  ELS

A0A1S3BJW4 uncharacterized protein LOC1034908381.5e-6778.33Show/hide
Query:  MQRASKDLLYLERKNLSSSSLESSLLVCKKDSTSKQPCRNEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLM
        M+ ASKDLL+LERK+LS+SSLESSLLVCKK+STSK+PCRNEKPIT  ASKS VLGRV+DFLGVISEANKKLQ+D+K+N++KYDIEALDGNESEVI++DLM
Subjt:  MQRASKDLLYLERKNLSSSSLESSLLVCKKDSTSKQPCRNEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLM

Query:  LGIADLHTPEAVAAAESAIVGNQPVIPLTCSSSSESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSKSKKTSRSSKSKRKGKSIKRPKIQ
        LGIADLHTPEAVAAAESAI+GN PVIPLTC SSSESESEESS DSI+SD D +D++K  +QN+D SNR SV  KRS S+K S  SKSK KGKS KRPKIQ
Subjt:  LGIADLHTPEAVAAAESAIVGNQPVIPLTCSSSSESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSKSKKTSRSSKSKRKGKSIKRPKIQ

Query:  ELS
         LS
Subjt:  ELS

A0A5D3CJH5 E3 ubiquitin-protein ligase RNF341.5e-6778.33Show/hide
Query:  MQRASKDLLYLERKNLSSSSLESSLLVCKKDSTSKQPCRNEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLM
        M+ ASKDLL+LERK+LS+SSLESSLLVCKK+STSK+PCRNEKPIT  ASKS VLGRV+DFLGVISEANKKLQ+D+K+N++KYDIEALDGNESEVI++DLM
Subjt:  MQRASKDLLYLERKNLSSSSLESSLLVCKKDSTSKQPCRNEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLM

Query:  LGIADLHTPEAVAAAESAIVGNQPVIPLTCSSSSESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSKSKKTSRSSKSKRKGKSIKRPKIQ
        LGIADLHTPEAVAAAESAI+GN PVIPLTC SSSESESEESS DSI+SD D +D++K  +QN+D SNR SV  KRS S+K S  SKSK KGKS KRPKIQ
Subjt:  LGIADLHTPEAVAAAESAIVGNQPVIPLTCSSSSESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSKSKKTSRSSKSKRKGKSIKRPKIQ

Query:  ELS
         LS
Subjt:  ELS

A0A6J1DMK4 uncharacterized protein LOC1110226277.2e-9499.51Show/hide
Query:  MQRASKDLLYLERKNLSSSSLESSLLVCKKDSTSKQPCRNEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLM
        MQRASKDLLYLERKNLSSSSLESSLLVCKKDSTSKQPCRNEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLM
Subjt:  MQRASKDLLYLERKNLSSSSLESSLLVCKKDSTSKQPCRNEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLM

Query:  LGIADLHTPEAVAAAESAIVGNQPVIPLTCSSSSESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSKSKKTSRSSKSKRKGKSIKRPKIQ
        LG+ADLHTPEAVAAAESAIVGNQPVIPLTCSSSSESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSKSKKTSRSSKSKRKGKSIKRPKIQ
Subjt:  LGIADLHTPEAVAAAESAIVGNQPVIPLTCSSSSESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSKSKKTSRSSKSKRKGKSIKRPKIQ

Query:  ELS
        ELS
Subjt:  ELS

A0A6J1KZJ8 uncharacterized protein LOC111498503 isoform X11.7e-6676.7Show/hide
Query:  MQRASKDLLYLERKNLSSSSLESSLLVCKKDSTSKQPCRNEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLM
        M+ ASKDLL LERK+L SSSLESSLLVCKK+STSK+PCRNEKPIT  A KSQVLGRVKDFLGV+SEANKKLQLDAKD++EKYDIEAL+GNESEVIE+DLM
Subjt:  MQRASKDLLYLERKNLSSSSLESSLLVCKKDSTSKQPCRNEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLM

Query:  LGIADLHTPEAVAAAESAIVGNQPVIPLTC---SSSSESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSKSKKTSRSSKSKRKGKSIKRP
        LGIADLHTPEAVAAAESAI+GNQPVIPL C   SSSSESESEESS DSI+SD++ +D++K   QN+D  NR SV  KRSKS++ +  S+S+ KGKS KRP
Subjt:  LGIADLHTPEAVAAAESAIVGNQPVIPLTC---SSSSESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSKSKKTSRSSKSKRKGKSIKRP

Query:  KIQELS
        KI ELS
Subjt:  KIQELS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G71430.1 unknown protein3.3e-2248.3Show/hide
Query:  KDLLYLERKNLSSSS-LESSLLVCKKDSTSKQPCR---NEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLML
        KDLL LE KN SSSS ++S+LL+C   +  K+        KP      KSQ+LG++K FLGV++EANKK    ++ N E Y+IEAL GNESE+IEMDLML
Subjt:  KDLLYLERKNLSSSS-LESSLLVCKKDSTSKQPCR---NEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLML

Query:  GIADLHTPEAVAAAESAIVGNQPVIPLTCSSSSESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSK
        G+ADL+TPEAV+AAE+AI G  P                 SGDS SSDD+ D + +G    S   +R     KRSK
Subjt:  GIADLHTPEAVAAAESAIVGNQPVIPLTCSSSSESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGCGCGCCAGCAAGGATCTTTTGTATTTGGAGCGGAAGAATTTATCCTCTTCATCCCTAGAGTCCTCACTGCTAGTCTGTAAAAAGGACTCAACTTCCAAGCAGCC
CTGTCGGAATGAAAAACCCATTACAAATTCGGCTTCAAAAAGCCAAGTGTTGGGAAGAGTCAAAGACTTCTTAGGAGTAATATCAGAAGCTAATAAAAAGCTGCAACTGG
ATGCAAAGGACAATTCTGAAAAATATGATATTGAAGCACTTGATGGCAATGAATCAGAAGTTATTGAAATGGATTTGATGTTGGGTATTGCCGATCTTCATACTCCTGAA
GCTGTGGCTGCTGCTGAATCTGCAATAGTTGGTAATCAGCCGGTGATTCCTTTGACTTGTAGTAGTAGTAGTGAATCGGAGTCTGAAGAGAGTAGTGGTGATAGTATTAG
CAGCGACGACGATAAAGATGACGATGACAAGGGTCACAATCAGAATAGTGACCACAGTAACAGATCATCAGTTAACTTCAAAAGATCCAAGTCCAAAAAAACCAGTCGTT
CAAGTAAAAGCAAAAGAAAAGGTAAATCAATAAAGCGCCCGAAGATTCAAGAGCTCTCT
mRNA sequenceShow/hide mRNA sequence
ATGCAGCGCGCCAGCAAGGATCTTTTGTATTTGGAGCGGAAGAATTTATCCTCTTCATCCCTAGAGTCCTCACTGCTAGTCTGTAAAAAGGACTCAACTTCCAAGCAGCC
CTGTCGGAATGAAAAACCCATTACAAATTCGGCTTCAAAAAGCCAAGTGTTGGGAAGAGTCAAAGACTTCTTAGGAGTAATATCAGAAGCTAATAAAAAGCTGCAACTGG
ATGCAAAGGACAATTCTGAAAAATATGATATTGAAGCACTTGATGGCAATGAATCAGAAGTTATTGAAATGGATTTGATGTTGGGTATTGCCGATCTTCATACTCCTGAA
GCTGTGGCTGCTGCTGAATCTGCAATAGTTGGTAATCAGCCGGTGATTCCTTTGACTTGTAGTAGTAGTAGTGAATCGGAGTCTGAAGAGAGTAGTGGTGATAGTATTAG
CAGCGACGACGATAAAGATGACGATGACAAGGGTCACAATCAGAATAGTGACCACAGTAACAGATCATCAGTTAACTTCAAAAGATCCAAGTCCAAAAAAACCAGTCGTT
CAAGTAAAAGCAAAAGAAAAGGTAAATCAATAAAGCGCCCGAAGATTCAAGAGCTCTCT
Protein sequenceShow/hide protein sequence
MQRASKDLLYLERKNLSSSSLESSLLVCKKDSTSKQPCRNEKPITNSASKSQVLGRVKDFLGVISEANKKLQLDAKDNSEKYDIEALDGNESEVIEMDLMLGIADLHTPE
AVAAAESAIVGNQPVIPLTCSSSSESESEESSGDSISSDDDKDDDDKGHNQNSDHSNRSSVNFKRSKSKKTSRSSKSKRKGKSIKRPKIQELS