CuGenDBv2

Gene ID	MS021184
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	light-harvesting complex-like protein 3 isotype 1, chloroplastic
Genome location	scaffold192:208845..213289
RNA-Seq Expression	MS021184
Synteny	MS021184
Gene Ontology terms	GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0046872 - metal ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0041046.1 uncharacterized protein E6C27_scaffold477G00170 [Cucumis melo var. makuwa]

1.3e-151

76.2

Show/hide

Query:  SSMALFSPPSHFSTLSPSSTHRTHFSFTAFPSLRTRNPTFT------TIRAAADNGAGI---SAAVAVETAVQPKDPEPEEQESLAAGANWSVAAAEE-V
        SSMALFSP SH STLSPSS H THFSF  F SLRTRNP+ +      TIRA ADNGAGI   SA VAVET V+ KDPEP E ESL AG N SVAAAEE V
Subjt:  SSMALFSPPSHFSTLSPSSTHRTHFSFTAFPSLRTRNPTFT------TIRAAADNGAGI---SAAVAVETAVQPKDPEPEEQESLAAGANWSVAAAEE-V

Query:  EVVSKFEDPKWVNGTWDLTQFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFESSIIPWWAWIKRYHLPEAELLNGRAAMVGFFMAYFVDSLTG
        EVVSKFEDPKWVNGTWDL QF+K+GSTDWDAVIDAEARRRKWLENNPESSSNEDPVVF++SI+PWWAWIKRYHLPEAELLNGRAAMVGFFMAYFVDSLTG
Subjt:  EVVSKFEDPKWVNGTWDLTQFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFESSIIPWWAWIKRYHLPEAELLNGRAAMVGFFMAYFVDSLTG

Query:  VGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETIKRLIDETTFYDKQWQATWQDETSA-------------KKVSKDNKVVVTVYSERQETRLAVNRYQ
        VGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIET+K+LIDETTFYDKQWQATWQDETS+               VSK+NKV+VTVYSE+QE RL VNRYQ
Subjt:  VGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETIKRLIDETTFYDKQWQATWQDETSA-------------KKVSKDNKVVVTVYSERQETRLAVNRYQ

Query:  RDDANKAVRNQWKQDIPSKGYNRRAELLKYSQRLRNSARSPASPYIRTRSPASPYIRTRSPASPYIQTPEPTSLKNKQPIARNIAINLACSSFSV
        R + NK VRNQWKQD  +KGYNRR ELLKYSQRLR SARSPASPYIR                    TPEP  LKNKQPIAR+IAINL C+SFS+
Subjt:  RDDANKAVRNQWKQDIPSKGYNRRAELLKYSQRLRNSARSPASPYIRTRSPASPYIRTRSPASPYIQTPEPTSLKNKQPIARNIAINLACSSFSV

XP_004147237.1 light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucumis sativus]

3.4e-110

83.59

Show/hide

Query:  SSMALFSPPSHFSTLSPSSTHRTHFSFTAFPSLRTRNPTFT-----TIRAAADNGAGI---SAAVAVETAVQPKDPE-----PEEQESLAAGANWSVAAA
        SSMALFSP SH ST SPS  H THFSF  F SLRTRNP+ +     TIRA ADNGAGI   SA V+VET V+ KDPE     PEEQESL AG N SVAAA
Subjt:  SSMALFSPPSHFSTLSPSSTHRTHFSFTAFPSLRTRNPTFT-----TIRAAADNGAGI---SAAVAVETAVQPKDPE-----PEEQESLAAGANWSVAAA

Query:  EE-VEVVSKFEDPKWVNGTWDLTQFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFESSIIPWWAWIKRYHLPEAELLNGRAAMVGFFMAYFVD
        EE VEVVSKFEDPKWVNGTWDL QF+K+GSTDWDAVIDAEARRRKWLENNPESSSNEDPVVF++SI+PWWAWIKRYHLPEAELLNGRAAMVGFFMAYFVD
Subjt:  EE-VEVVSKFEDPKWVNGTWDLTQFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFESSIIPWWAWIKRYHLPEAELLNGRAAMVGFFMAYFVD

Query:  SLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETIKRLIDETTFYDKQWQATWQDETS
        SLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIET+K+LIDETTFYDKQWQATWQDETS
Subjt:  SLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETIKRLIDETTFYDKQWQATWQDETS

XP_008448777.1 PREDICTED: uncharacterized protein LOC103490842 [Cucumis melo]

6.1e-112

84.94

Show/hide

Query:  SSMALFSPPSHFSTLSPSSTHRTHFSFTAFPSLRTRNPTFT------TIRAAADNGAGI---SAAVAVETAVQPKDPEPEEQESLAAGANWSVAAAEE-V
        SSMALFSP SH STLSPSS H THFSF  F SLRTRNP+ +      TIRA ADNGAGI   SA VAVET V+ KDPEP E ESL AG N SVAAAEE V
Subjt:  SSMALFSPPSHFSTLSPSSTHRTHFSFTAFPSLRTRNPTFT------TIRAAADNGAGI---SAAVAVETAVQPKDPEPEEQESLAAGANWSVAAAEE-V

Query:  EVVSKFEDPKWVNGTWDLTQFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFESSIIPWWAWIKRYHLPEAELLNGRAAMVGFFMAYFVDSLTG
        EVVSKFEDPKWVNGTWDL QF+K+GSTDWDAVIDAEARRRKWLENNPESSSNEDPVVF++SI+PWWAWIKRYHLPEAELLNGRAAMVGFFMAYFVDSLTG
Subjt:  EVVSKFEDPKWVNGTWDLTQFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFESSIIPWWAWIKRYHLPEAELLNGRAAMVGFFMAYFVDSLTG

Query:  VGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETIKRLIDETTFYDKQWQATWQDETSA
        VGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIET+K+LIDETTFYDKQWQATWQDETS+
Subjt:  VGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETIKRLIDETTFYDKQWQATWQDETSA

XP_022155552.1 light-harvesting complex-like protein 3 isotype 1, chloroplastic [Momordica charantia]

2.1e-136

99.6

Show/hide

Query:  SSSMALFSPPSHFSTLSPSSTHRTHFSFTAFPSLRTRNPTFTTIRAAADNGAGISAAVAVETAVQPKDPEPEEQESLAAGANWSVAAAEEVEVVSKFEDP
        SSSMALFSPPSHFSTLSPSSTHRTHFSFTAFPSLRTRNPTFTTIRAAADNGAGISAAVAVETAVQPKDPEPEEQESLAAGAN SVAAAEEVEVVSKFEDP
Subjt:  SSSMALFSPPSHFSTLSPSSTHRTHFSFTAFPSLRTRNPTFTTIRAAADNGAGISAAVAVETAVQPKDPEPEEQESLAAGANWSVAAAEEVEVVSKFEDP

Query:  KWVNGTWDLTQFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFESSIIPWWAWIKRYHLPEAELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGN
        KWVNGTWDLTQFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFESSIIPWWAWIKRYHLPEAELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGN
Subjt:  KWVNGTWDLTQFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFESSIIPWWAWIKRYHLPEAELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGN

Query:  FFCKTLLFVAVVGVLLIRKNEDIETIKRLIDETTFYDKQWQATWQDETSAKK
        FFCKTLLFVAVVGVLLIRKNEDIETIKRLIDETTFYDKQWQATWQDETSAKK
Subjt:  FFCKTLLFVAVVGVLLIRKNEDIETIKRLIDETTFYDKQWQATWQDETSAKK

XP_038906355.1 light-harvesting complex-like protein 3 isotype 1, chloroplastic [Benincasa hispida]

1.0e-114

85.71

Show/hide

Query:  SSMALFSPPSHFSTLSPSSTHRTHFSFTAFPSLRTRNPTFT---TIRAAADNGAGI---SAAVAVETAVQPKDPEP-----EEQESLAAGANWSVAAAEE
        SSMALFSP SH STLSPSS HRTHFSF  F SLRTRNP+ +   TIRA ADNGAGI   SAAVAVET V+ KDPEP     EEQESL AG N SVAAAEE
Subjt:  SSMALFSPPSHFSTLSPSSTHRTHFSFTAFPSLRTRNPTFT---TIRAAADNGAGI---SAAVAVETAVQPKDPEP-----EEQESLAAGANWSVAAAEE

Query:  VEVVSKFEDPKWVNGTWDLTQFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFESSIIPWWAWIKRYHLPEAELLNGRAAMVGFFMAYFVDSLT
        VEVVSKFEDPKW+NGTWDL QF+K+GSTDWDAVIDAEARRRKWLENNPESSSNEDPVVF++SI+PWWAWIKRYHLPEAELLNGRAAMVGFFMAYFVDSLT
Subjt:  VEVVSKFEDPKWVNGTWDLTQFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFESSIIPWWAWIKRYHLPEAELLNGRAAMVGFFMAYFVDSLT

Query:  GVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETIKRLIDETTFYDKQWQATWQDETS
        GVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIET+K+LIDETTFYDKQWQATWQDE S
Subjt:  GVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETIKRLIDETTFYDKQWQATWQDETS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L5D8 Uncharacterized protein

1.6e-110

83.59

Show/hide

Query:  SSMALFSPPSHFSTLSPSSTHRTHFSFTAFPSLRTRNPTFT-----TIRAAADNGAGI---SAAVAVETAVQPKDPE-----PEEQESLAAGANWSVAAA
        SSMALFSP SH ST SPS  H THFSF  F SLRTRNP+ +     TIRA ADNGAGI   SA V+VET V+ KDPE     PEEQESL AG N SVAAA
Subjt:  SSMALFSPPSHFSTLSPSSTHRTHFSFTAFPSLRTRNPTFT-----TIRAAADNGAGI---SAAVAVETAVQPKDPE-----PEEQESLAAGANWSVAAA

Query:  EE-VEVVSKFEDPKWVNGTWDLTQFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFESSIIPWWAWIKRYHLPEAELLNGRAAMVGFFMAYFVD
        EE VEVVSKFEDPKWVNGTWDL QF+K+GSTDWDAVIDAEARRRKWLENNPESSSNEDPVVF++SI+PWWAWIKRYHLPEAELLNGRAAMVGFFMAYFVD
Subjt:  EE-VEVVSKFEDPKWVNGTWDLTQFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFESSIIPWWAWIKRYHLPEAELLNGRAAMVGFFMAYFVD

Query:  SLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETIKRLIDETTFYDKQWQATWQDETS
        SLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIET+K+LIDETTFYDKQWQATWQDETS
Subjt:  SLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETIKRLIDETTFYDKQWQATWQDETS

A0A1S3BLD8 uncharacterized protein LOC103490842

3.0e-112

84.94

Show/hide

Query:  SSMALFSPPSHFSTLSPSSTHRTHFSFTAFPSLRTRNPTFT------TIRAAADNGAGI---SAAVAVETAVQPKDPEPEEQESLAAGANWSVAAAEE-V
        SSMALFSP SH STLSPSS H THFSF  F SLRTRNP+ +      TIRA ADNGAGI   SA VAVET V+ KDPEP E ESL AG N SVAAAEE V
Subjt:  SSMALFSPPSHFSTLSPSSTHRTHFSFTAFPSLRTRNPTFT------TIRAAADNGAGI---SAAVAVETAVQPKDPEPEEQESLAAGANWSVAAAEE-V

Query:  EVVSKFEDPKWVNGTWDLTQFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFESSIIPWWAWIKRYHLPEAELLNGRAAMVGFFMAYFVDSLTG
        EVVSKFEDPKWVNGTWDL QF+K+GSTDWDAVIDAEARRRKWLENNPESSSNEDPVVF++SI+PWWAWIKRYHLPEAELLNGRAAMVGFFMAYFVDSLTG
Subjt:  EVVSKFEDPKWVNGTWDLTQFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFESSIIPWWAWIKRYHLPEAELLNGRAAMVGFFMAYFVDSLTG

Query:  VGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETIKRLIDETTFYDKQWQATWQDETSA
        VGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIET+K+LIDETTFYDKQWQATWQDETS+
Subjt:  VGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETIKRLIDETTFYDKQWQATWQDETSA

A0A5A7TG76 Uncharacterized protein

6.5e-152

76.2

Show/hide

Query:  SSMALFSPPSHFSTLSPSSTHRTHFSFTAFPSLRTRNPTFT------TIRAAADNGAGI---SAAVAVETAVQPKDPEPEEQESLAAGANWSVAAAEE-V
        SSMALFSP SH STLSPSS H THFSF  F SLRTRNP+ +      TIRA ADNGAGI   SA VAVET V+ KDPEP E ESL AG N SVAAAEE V
Subjt:  SSMALFSPPSHFSTLSPSSTHRTHFSFTAFPSLRTRNPTFT------TIRAAADNGAGI---SAAVAVETAVQPKDPEPEEQESLAAGANWSVAAAEE-V

Query:  EVVSKFEDPKWVNGTWDLTQFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFESSIIPWWAWIKRYHLPEAELLNGRAAMVGFFMAYFVDSLTG
        EVVSKFEDPKWVNGTWDL QF+K+GSTDWDAVIDAEARRRKWLENNPESSSNEDPVVF++SI+PWWAWIKRYHLPEAELLNGRAAMVGFFMAYFVDSLTG
Subjt:  EVVSKFEDPKWVNGTWDLTQFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFESSIIPWWAWIKRYHLPEAELLNGRAAMVGFFMAYFVDSLTG

Query:  VGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETIKRLIDETTFYDKQWQATWQDETSA-------------KKVSKDNKVVVTVYSERQETRLAVNRYQ
        VGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIET+K+LIDETTFYDKQWQATWQDETS+               VSK+NKV+VTVYSE+QE RL VNRYQ
Subjt:  VGLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETIKRLIDETTFYDKQWQATWQDETSA-------------KKVSKDNKVVVTVYSERQETRLAVNRYQ

Query:  RDDANKAVRNQWKQDIPSKGYNRRAELLKYSQRLRNSARSPASPYIRTRSPASPYIRTRSPASPYIQTPEPTSLKNKQPIARNIAINLACSSFSV
        R + NK VRNQWKQD  +KGYNRR ELLKYSQRLR SARSPASPYIR                    TPEP  LKNKQPIAR+IAINL C+SFS+
Subjt:  RDDANKAVRNQWKQDIPSKGYNRRAELLKYSQRLRNSARSPASPYIRTRSPASPYIRTRSPASPYIQTPEPTSLKNKQPIARNIAINLACSSFSV

A0A6J1DPN2 light-harvesting complex-like protein 3 isotype 1, chloroplastic

1.0e-136

99.6

Show/hide

Query:  SSSMALFSPPSHFSTLSPSSTHRTHFSFTAFPSLRTRNPTFTTIRAAADNGAGISAAVAVETAVQPKDPEPEEQESLAAGANWSVAAAEEVEVVSKFEDP
        SSSMALFSPPSHFSTLSPSSTHRTHFSFTAFPSLRTRNPTFTTIRAAADNGAGISAAVAVETAVQPKDPEPEEQESLAAGAN SVAAAEEVEVVSKFEDP
Subjt:  SSSMALFSPPSHFSTLSPSSTHRTHFSFTAFPSLRTRNPTFTTIRAAADNGAGISAAVAVETAVQPKDPEPEEQESLAAGANWSVAAAEEVEVVSKFEDP

Query:  KWVNGTWDLTQFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFESSIIPWWAWIKRYHLPEAELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGN
        KWVNGTWDLTQFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFESSIIPWWAWIKRYHLPEAELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGN
Subjt:  KWVNGTWDLTQFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFESSIIPWWAWIKRYHLPEAELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGN

Query:  FFCKTLLFVAVVGVLLIRKNEDIETIKRLIDETTFYDKQWQATWQDETSAKK
        FFCKTLLFVAVVGVLLIRKNEDIETIKRLIDETTFYDKQWQATWQDETSAKK
Subjt:  FFCKTLLFVAVVGVLLIRKNEDIETIKRLIDETTFYDKQWQATWQDETSAKK

A0A6J1HQ78 light-harvesting complex-like protein 3 isotype 1, chloroplastic

1.7e-107

83.6

Show/hide

Query:  SSMALFSPPSHFSTLSPSSTHRTHFSFTAFPSLRTRNPTFTTIRAAADNGAGIS-AAVAVETAVQPKDPEP--EEQESLAAGANWSVAAAEEVEVVSKFE
        SSMALFSPPS  S+LSPSS HRTHF    F SLR+RNP+      AADNGAGIS  +VAVE AV  KDPEP  E++ESLA   N SVAA EEV VVSKFE
Subjt:  SSMALFSPPSHFSTLSPSSTHRTHFSFTAFPSLRTRNPTFTTIRAAADNGAGIS-AAVAVETAVQPKDPEP--EEQESLAAGANWSVAAAEEVEVVSKFE

Query:  DPKWVNGTWDLTQFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFESSIIPWWAWIKRYHLPEAELLNGRAAMVGFFMAYFVDSLTGVGLVGQM
        DPKWVNGTWDL QFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPV+F++SI+PWWAWIKRYHLPEAE+LNGRAAMVGFFMAYFVDSLTGVGLVGQM
Subjt:  DPKWVNGTWDLTQFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFESSIIPWWAWIKRYHLPEAELLNGRAAMVGFFMAYFVDSLTGVGLVGQM

Query:  GNFFCKTLLFVAVVGVLLIRKNEDIETIKRLIDETTFYDKQWQATWQDET
        GNFFCKTLLFVAVVGVLLIRKNEDIET+K+LIDETTFYDKQWQATWQDET
Subjt:  GNFFCKTLLFVAVVGVLLIRKNEDIETIKRLIDETTFYDKQWQATWQDET

SwissProt top hits

e value

%identity

Alignment

Q6NKS4 Light-harvesting complex-like protein 3 isotype 2, chloroplastic

1.3e-72

57.41

Show/hide

Query:  SSSMALFSPPSHFSTLSPSSTHRTHFSFTAFPSLRTRNPTFTTI-RAAADNGAGI-------SAAVAVETAVQPKDPEPEEQESLAAGANWSVAAAEEVE
        S SMALFSPP   S  +P+   +   S      L T+  +  ++ RA++DNG           A+VAVE    P     E   +   GA    A     E
Subjt:  SSSMALFSPPSHFSTLSPSSTHRTHFSFTAFPSLRTRNPTFTTI-RAAADNGAGI-------SAAVAVETAVQPKDPEPEEQESLAAGANWSVAAAEEVE

Query:  VVSKFEDPKWVNGTWDLTQFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFESSIIPWWAWIKRYHLPEAELLNGRAAMVGFFMAYFVDSLTGV
         V K+++ KWVNGTWDL QF KDG TDWD+VI +EA+RRKWLE+NPE++SN++ VVF++SIIPWWAW+KRYHLPEAELLNGRAAM+GFFMAYFVDSLTGV
Subjt:  VVSKFEDPKWVNGTWDLTQFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFESSIIPWWAWIKRYHLPEAELLNGRAAMVGFFMAYFVDSLTGV

Query:  GLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETIKRLIDETTFYDKQWQATWQDETSAKKVSK
        GLV QMGNFFCKTLLFVAV GVL IRKNED++ +K L DETT YDKQWQA W++  S+   SK
Subjt:  GLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETIKRLIDETTFYDKQWQATWQDETSAKKVSK

Q9SYX1 Light-harvesting complex-like protein 3 isotype 1, chloroplastic

2.4e-74

57.79

Show/hide

Query:  MALFSPPSHFSTLSPSSTHRTHFSFTAFPSLRTRNPTFTTIRAAADNGA-GISAAVAVE--------TAVQPKDPEPEEQESLAAGANWSVAAAE--EVE
        MALFSPP   S+L  +      FSF+   S   R    +  RA++D+G+   +AAV+VE            P+     ++E  A   N +V   E    E
Subjt:  MALFSPPSHFSTLSPSSTHRTHFSFTAFPSLRTRNPTFTTIRAAADNGA-GISAAVAVE--------TAVQPKDPEPEEQESLAAGANWSVAAAE--EVE

Query:  VVSKFEDPKWVNGTWDLTQFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFESSIIPWWAWIKRYHLPEAELLNGRAAMVGFFMAYFVDSLTGV
         V KF+D +W+NGTWDL QF KDG TDWD+VI AEA+RRKWLE NPE++SN++PV+F++SIIPWWAWIKRYHLPEAELLNGRAAM+GFFMAYFVDSLTGV
Subjt:  VVSKFEDPKWVNGTWDLTQFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFESSIIPWWAWIKRYHLPEAELLNGRAAMVGFFMAYFVDSLTGV

Query:  GLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETIKRLIDETTFYDKQWQATWQDETSAKKVSK
        GLV QMGNFFCKTLLFVAV GVL IRKNED++ +K L DETT YDKQWQA W+++      SK
Subjt:  GLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETIKRLIDETTFYDKQWQATWQDETSAKKVSK

Arabidopsis top hits

e value

%identity

Alignment

AT4G17600.1 Chlorophyll A-B binding family protein

1.7e-75

57.79

Show/hide

Query:  MALFSPPSHFSTLSPSSTHRTHFSFTAFPSLRTRNPTFTTIRAAADNGA-GISAAVAVE--------TAVQPKDPEPEEQESLAAGANWSVAAAE--EVE
        MALFSPP   S+L  +      FSF+   S   R    +  RA++D+G+   +AAV+VE            P+     ++E  A   N +V   E    E
Subjt:  MALFSPPSHFSTLSPSSTHRTHFSFTAFPSLRTRNPTFTTIRAAADNGA-GISAAVAVE--------TAVQPKDPEPEEQESLAAGANWSVAAAE--EVE

Query:  VVSKFEDPKWVNGTWDLTQFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFESSIIPWWAWIKRYHLPEAELLNGRAAMVGFFMAYFVDSLTGV
         V KF+D +W+NGTWDL QF KDG TDWD+VI AEA+RRKWLE NPE++SN++PV+F++SIIPWWAWIKRYHLPEAELLNGRAAM+GFFMAYFVDSLTGV
Subjt:  VVSKFEDPKWVNGTWDLTQFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFESSIIPWWAWIKRYHLPEAELLNGRAAMVGFFMAYFVDSLTGV

Query:  GLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETIKRLIDETTFYDKQWQATWQDETSAKKVSK
        GLV QMGNFFCKTLLFVAV GVL IRKNED++ +K L DETT YDKQWQA W+++      SK
Subjt:  GLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETIKRLIDETTFYDKQWQATWQDETSAKKVSK

AT5G47110.1 Chlorophyll A-B binding family protein

9.2e-74

57.41

Show/hide

Query:  SSSMALFSPPSHFSTLSPSSTHRTHFSFTAFPSLRTRNPTFTTI-RAAADNGAGI-------SAAVAVETAVQPKDPEPEEQESLAAGANWSVAAAEEVE
        S SMALFSPP   S  +P+   +   S      L T+  +  ++ RA++DNG           A+VAVE    P     E   +   GA    A     E
Subjt:  SSSMALFSPPSHFSTLSPSSTHRTHFSFTAFPSLRTRNPTFTTI-RAAADNGAGI-------SAAVAVETAVQPKDPEPEEQESLAAGANWSVAAAEEVE

Query:  VVSKFEDPKWVNGTWDLTQFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFESSIIPWWAWIKRYHLPEAELLNGRAAMVGFFMAYFVDSLTGV
         V K+++ KWVNGTWDL QF KDG TDWD+VI +EA+RRKWLE+NPE++SN++ VVF++SIIPWWAW+KRYHLPEAELLNGRAAM+GFFMAYFVDSLTGV
Subjt:  VVSKFEDPKWVNGTWDLTQFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFESSIIPWWAWIKRYHLPEAELLNGRAAMVGFFMAYFVDSLTGV

Query:  GLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETIKRLIDETTFYDKQWQATWQDETSAKKVSK
        GLV QMGNFFCKTLLFVAV GVL IRKNED++ +K L DETT YDKQWQA W++  S+   SK
Subjt:  GLVGQMGNFFCKTLLFVAVVGVLLIRKNEDIETIKRLIDETTFYDKQWQATWQDETSAKKVSK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

TCCTCTTCCATGGCCTTGTTTTCTCCTCCATCCCATTTCTCTACGCTCTCTCCCTCTTCGACCCACAGAACCCACTTCTCCTTCACGGCCTTCCCATCTCTCCGAACCAG
AAACCCCACTTTCACCACCATCAGGGCCGCTGCTGACAATGGCGCCGGAATTTCAGCTGCCGTCGCTGTAGAAACCGCCGTCCAACCGAAGGATCCGGAGCCGGAAGAGC
AGGAGAGCCTCGCTGCCGGTGCTAATTGGTCCGTGGCGGCTGCCGAAGAAGTGGAGGTGGTCAGCAAATTTGAAGACCCCAAGTGGGTTAATGGGACTTGGGATTTGACT
CAGTTTCGGAAAGATGGAAGTACCGATTGGGATGCTGTTATTGATGCCGAGGCTAGGAGGAGAAAATGGCTGGAAAACAATCCAGAATCATCAAGCAATGAAGACCCTGT
AGTATTTGAATCATCCATAATTCCTTGGTGGGCTTGGATTAAGCGCTACCATCTCCCTGAGGCTGAGCTACTCAATGGCCGTGCGGCCATGGTGGGGTTCTTCATGGCTT
ACTTTGTTGATAGCTTGACTGGGGTGGGACTAGTAGGTCAAATGGGCAACTTCTTCTGCAAAACTTTGTTATTTGTAGCTGTGGTGGGAGTTCTTTTGATCAGAAAGAAT
GAAGATATAGAGACTATAAAGAGGTTGATTGATGAGACAACATTTTATGACAAGCAATGGCAAGCAACTTGGCAGGATGAAACCTCAGCCAAAAAGGTCTCAAAAGATAA
CAAAGTGGTGGTGACTGTGTATTCAGAGAGGCAAGAAACAAGGCTAGCAGTAAACCGTTACCAGCGCGACGACGCGAACAAAGCAGTGAGAAATCAGTGGAAGCAAGACA
TACCTAGTAAAGGATACAATAGGAGAGCTGAGCTCCTCAAGTACTCTCAACGGCTTCGAAATTCTGCACGATCACCTGCATCACCATATATCCGAACACGATCACCTGCA
TCACCATATATCCGAACACGATCACCTGCATCACCATATATCCAAACACCAGAGCCGACTTCCTTAAAGAACAAGCAACCAATTGCAAGAAACATAGCAATTAATCTTGC
ATGCTCTTCCTTTTCTGTAAGTTTGCATATTGATTTACAAAGCAATCACATTTATCTTTTTGTCCTAGCAAGA

mRNA sequence

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Protein sequence

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SSSMALFSPPSHFSTLSPSSTHRTHFSFTAFPSLRTRNPTFTTIRAAADNGAGISAAVAVETAVQPKDPEPEEQESLAAGANWSVAAAEEVEVVSKFEDPKWVNGTWDLT
QFRKDGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFESSIIPWWAWIKRYHLPEAELLNGRAAMVGFFMAYFVDSLTGVGLVGQMGNFFCKTLLFVAVVGVLLIRKN
EDIETIKRLIDETTFYDKQWQATWQDETSAKKVSKDNKVVVTVYSERQETRLAVNRYQRDDANKAVRNQWKQDIPSKGYNRRAELLKYSQRLRNSARSPASPYIRTRSPA
SPYIRTRSPASPYIQTPEPTSLKNKQPIARNIAINLACSSFSVSLHIDLQSNHIYLFVLAR

MS021184 (gene) of Bitter gourd (TR) v1 genome