CuGenDBv2

Gene ID	MS021217
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Pentatricopeptide repeat-containing protein
Genome location	scaffold358:86896..87780
RNA-Seq Expression	MS021217
Synteny	MS021217
Gene Ontology terms	GO:0009793 - embryo development ending in seed dormancy (biological process) GO:0048364 - root development (biological process) GO:0048367 - shoot system development (biological process) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR002885 - Pentatricopeptide repeat IPR011990 - Tetratricopeptide-like helical domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6607949.1 putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]

1.3e-143

84.07

Show/hide

Query:  PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKLKEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEM
        PDAC+FNILIHAA LCG+ DDAWE+FDEM KRG+ PNVVTFGTLIYGLSLNSKL EAL+LKEDMVRV  ILPNASIYATLIKGFCGIG+L LAF+LKEEM
Subjt:  PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKLKEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEM

Query:  VTNKVKMDSAIYSTLISALFKHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVISFNSIIGELCKKGKWNEAID
        VTNKVK+DSAIYST ISALFKHGRKEEV  IL EM ENGCKPDTVTYNAMI+G CKENDLESA+RVLDEMV+KGCKPDVISFN+I+G LCK+GKW++A+D
Subjt:  VTNKVKMDSAIYSTLISALFKHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVISFNSIIGELCKKGKWNEAID

Query:  LLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEMIFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK
        LL DMPRRGCSPDVVSYRTLFDGLCE MQLQ+ATSILDEMIFKGYVPRSESINKLVD LCQE ++ELLWMV++SL RGN MN+D WARV+A VCK
Subjt:  LLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEMIFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK

KAG7037464.1 putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.7e-143

84.07

Show/hide

Query:  PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKLKEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEM
        PDACTFNILIHAA LCG+ DDAWE+FDEM KRG  PNVVTFGTLIYGLSLNSKL EAL+LKEDMVRV  ILPNASIYATLIKGFCGIG+L LAF+LKEEM
Subjt:  PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKLKEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEM

Query:  VTNKVKMDSAIYSTLISALFKHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVISFNSIIGELCKKGKWNEAID
        VTNKVK+DSAIYST ISA FKHGRKEEV +IL EM ENGCKPDTVTYNAMI+G CKENDLESA+RVLDEMV+KGCKPDVISFN+I+G LCK+GKW++A+D
Subjt:  VTNKVKMDSAIYSTLISALFKHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVISFNSIIGELCKKGKWNEAID

Query:  LLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEMIFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK
        LL DMPRRGCSPDVVSYRTLFDGLCE MQLQ+ATSILDEMIFKGYVPRSESINKLVD LCQE ++ELLWMV++SL RGN MN+D WARV+A VCK
Subjt:  LLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEMIFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK

XP_022131752.1 putative pentatricopeptide repeat-containing protein At1g53330 [Momordica charantia]

4.4e-171

99.32

Show/hide

Query:  PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKLKEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEM
        PDACTFNILIHAAYLCGNSDDAWE+FDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKLKEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEM
Subjt:  PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKLKEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEM

Query:  VTNKVKMDSAIYSTLISALFKHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVISFNSIIGELCKKGKWNEAID
        VT+KVKMDSAIYSTLISALFKHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVISFNSIIGELCKKGKWNEAID
Subjt:  VTNKVKMDSAIYSTLISALFKHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVISFNSIIGELCKKGKWNEAID

Query:  LLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEMIFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK
        LLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEMIFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK
Subjt:  LLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEMIFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK

XP_022941521.1 LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g53330 [Cucurbita moschata]

2.3e-143

84.07

Show/hide

Query:  PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKLKEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEM
        PDACTFNILIHAA LCG+ DDAWE+FDEM KRG+ PNVVTFGTLIYGLSLNSKL EAL+LKEDMVRV  ILPNASIYATLIKGFCG G+L LAF+LKEEM
Subjt:  PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKLKEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEM

Query:  VTNKVKMDSAIYSTLISALFKHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVISFNSIIGELCKKGKWNEAID
        VTNKVK+DSAIYST ISALFKHGRKEEV  IL EM ENGCKPDTVTYNAMI+G CKENDLESA+RVLDEMV+KGCKPDVISFN+I+G LCK+GKW++A+D
Subjt:  VTNKVKMDSAIYSTLISALFKHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVISFNSIIGELCKKGKWNEAID

Query:  LLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEMIFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK
        LL DMPRRGCSPDVVSYRTLFDGLCE MQLQ+ATSILDEMIFKGYVPRSESINKLVD LCQE ++ELLWMV++SL RGN MN+D WARV+A VCK
Subjt:  LLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEMIFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK

XP_023523314.1 putative pentatricopeptide repeat-containing protein At1g53330 [Cucurbita pepo subsp. pepo]

6.4e-146

84.75

Show/hide

Query:  PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKLKEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEM
        PDACTFNILIHAA LCG+ DDAWE+FDEM KRG+ PNVVTFGTLIYGLSLNSKL EAL+LKEDMVRV GILPNASIYATLIKGFCGIG+L LAF+LKEEM
Subjt:  PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKLKEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEM

Query:  VTNKVKMDSAIYSTLISALFKHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVISFNSIIGELCKKGKWNEAID
        VTNKVK+DSAIYST ISALFKHGRKEEV +IL EM ENGCKPDTVTYNAMI+G CKENDLESA++VLDEMV+KGCKPDVISFN+I+G LCK+GKW++A+D
Subjt:  VTNKVKMDSAIYSTLISALFKHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVISFNSIIGELCKKGKWNEAID

Query:  LLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEMIFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK
        LL DMPRRGCSPDVVSYRTLFDGLCE MQLQ+ATSILDEMIFKGYVPRSESINKL+D LCQE ++ELLWMVL+SLGRGN MN+D WARV+A VCK
Subjt:  LLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEMIFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BT71 putative pentatricopeptide repeat-containing protein At1g53330

1.9e-140

82.37

Show/hide

Query:  PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKLKEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEM
        PDACTFNILIHAA LCG+ D  W +FDEMRKRG+ PNVVTFGTLIYGLSLNSKLKEAL+LKEDMVRV  I PNASIY TLIKGFCG+GEL  AF+LKEEM
Subjt:  PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKLKEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEM

Query:  VTNKVKMDSAIYSTLISALFKHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVISFNSIIGELCKKGKWNEAID
        VT+KVK+DS IYSTLISALFKHGRKEEV DIL EM ENGCKPDT TYNAMI+GHCKENDLESA RV+DEMVEKGCKPDVISFN+IIG LCK+GK ++A+D
Subjt:  VTNKVKMDSAIYSTLISALFKHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVISFNSIIGELCKKGKWNEAID

Query:  LLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEMIFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK
        LLEDMPRRGC PDV+SYR +FDGLCE MQL++ATSILDEMIFKGYVPR+ESINKLVD LCQEC++ELLWMVL+SLGRGN MNMDTWARV+A + K
Subjt:  LLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEMIFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK

A0A5A7VBA5 Putative pentatricopeptide repeat-containing protein

1.9e-140

82.37

Show/hide

Query:  PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKLKEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEM
        PDACTFNILIHAA LCG+ D  W +FDEMRKRG+ PNVVTFGTLIYGLSLNSKLKEAL+LKEDMVRV  I PNASIY TLIKGFCG+GEL  AF+LKEEM
Subjt:  PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKLKEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEM

Query:  VTNKVKMDSAIYSTLISALFKHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVISFNSIIGELCKKGKWNEAID
        VT+KVK+DS IYSTLISALFKHGRKEEV DIL EM ENGCKPDT TYNAMI+GHCKENDLESA RV+DEMVEKGCKPDVISFN+IIG LCK+GK ++A+D
Subjt:  VTNKVKMDSAIYSTLISALFKHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVISFNSIIGELCKKGKWNEAID

Query:  LLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEMIFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK
        LLEDMPRRGC PDV+SYR +FDGLCE MQL++ATSILDEMIFKGYVPR+ESINKLVD LCQEC++ELLWMVL+SLGRGN MNMDTWARV+A + K
Subjt:  LLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEMIFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK

A0A6J1BRW9 putative pentatricopeptide repeat-containing protein At1g53330

2.1e-171

99.32

Show/hide

Query:  PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKLKEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEM
        PDACTFNILIHAAYLCGNSDDAWE+FDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKLKEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEM
Subjt:  PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKLKEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEM

Query:  VTNKVKMDSAIYSTLISALFKHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVISFNSIIGELCKKGKWNEAID
        VT+KVKMDSAIYSTLISALFKHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVISFNSIIGELCKKGKWNEAID
Subjt:  VTNKVKMDSAIYSTLISALFKHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVISFNSIIGELCKKGKWNEAID

Query:  LLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEMIFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK
        LLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEMIFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK
Subjt:  LLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEMIFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK

A0A6J1FLC2 LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g53330

1.1e-143

84.07

Show/hide

Query:  PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKLKEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEM
        PDACTFNILIHAA LCG+ DDAWE+FDEM KRG+ PNVVTFGTLIYGLSLNSKL EAL+LKEDMVRV  ILPNASIYATLIKGFCG G+L LAF+LKEEM
Subjt:  PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKLKEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEM

Query:  VTNKVKMDSAIYSTLISALFKHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVISFNSIIGELCKKGKWNEAID
        VTNKVK+DSAIYST ISALFKHGRKEEV  IL EM ENGCKPDTVTYNAMI+G CKENDLESA+RVLDEMV+KGCKPDVISFN+I+G LCK+GKW++A+D
Subjt:  VTNKVKMDSAIYSTLISALFKHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVISFNSIIGELCKKGKWNEAID

Query:  LLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEMIFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK
        LL DMPRRGCSPDVVSYRTLFDGLCE MQLQ+ATSILDEMIFKGYVPRSESINKLVD LCQE ++ELLWMV++SL RGN MN+D WARV+A VCK
Subjt:  LLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEMIFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK

A0A6J1J467 putative pentatricopeptide repeat-containing protein At1g53330

1.1e-143

83.73

Show/hide

Query:  PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKLKEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEM
        PDACTFNILIHAA LCG+ DDAWE+FDEM KRG+ PNVVTFGTLIYGLSLNSKL EAL+LKEDMVRV  ILPNASIYATLIKGFCGIG+L LAF+LKEEM
Subjt:  PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKLKEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEM

Query:  VTNKVKMDSAIYSTLISALFKHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVISFNSIIGELCKKGKWNEAID
        VTNKVK+DSAIYST ISALFKHGRKEEV +IL EM ENGCKPDTVTYN MI+G CKENDLESA+RVLDEMV+KGCKPDVISFN+I+  LCK+GKW++A+D
Subjt:  VTNKVKMDSAIYSTLISALFKHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVISFNSIIGELCKKGKWNEAID

Query:  LLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEMIFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK
        LL DMPRRGCSPDVVSYRTLFDGLCE MQLQ+ATSILDEMIFKGYVPRSESINKL+D LCQE ++ELLWMV +SLGRGN MN+D WARV+A VCK
Subjt:  LLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEMIFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK

SwissProt top hits

e value

%identity

Alignment

Q0WKV3 Pentatricopeptide repeat-containing protein At1g12300, mitochondrial

6.6e-45

34.48

Show/hide

Query:  PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKLKEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEM
        P+  TF+ LI+   L G   +A EL D M + G  P+++T  TL+ GL L+ K  EA+ L + MV   G  PNA  Y  ++   C  G+  LA EL  +M
Subjt:  PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKLKEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEM

Query:  VTNKVKMDSAIYSTLISALFKHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVISFNSIIGELCKKGKWNEAID
            +K+D+  YS +I  L KHG  +   ++  EM   G   + +TYN +I G C     +   ++L +M+++   P+V++F+ +I    K+GK  EA +
Subjt:  VTNKVKMDSAIYSTLISALFKHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVISFNSIIGELCKKGKWNEAID

Query:  LLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEMIFKGYVPRSESINKLVDGLCQ
        L ++M  RG +PD ++Y +L DG C+   L KA  ++D M+ KG  P   + N L++G C+
Subjt:  LLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEMIFKGYVPRSESINKLVDGLCQ

Q3EDF8 Pentatricopeptide repeat-containing protein At1g09900

1.2e-46

34.21

Show/hide

Query:  PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKLKEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEM
        PD  T+ ILI A         A +L DEMR RG  P+VVT+  L+ G+    +L EA+K   DM    G  PN   +  +++  C  G  + A +L  +M
Subjt:  PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKLKEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEM

Query:  VTNKVKMDSAIYSTLISALFKHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVISFNSIIGELCKKGKWNEAID
        +          ++ LI+ L + G      DIL +M ++GC+P++++YN ++ G CKE  ++ A   L+ MV +GC PD++++N+++  LCK GK  +A++
Subjt:  VTNKVKMDSAIYSTLISALFKHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVISFNSIIGELCKKGKWNEAID

Query:  LLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEMIFKGYVPRSESINKLVDGLCQECDVE
        +L  +  +GCSP +++Y T+ DGL +  +  KA  +LDEM  K   P + + + LV GL +E  V+
Subjt:  LLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEMIFKGYVPRSESINKLVDGLCQECDVE

Q9ASZ8 Pentatricopeptide repeat-containing protein At1g12620

2.7e-46

36.4

Show/hide

Query:  PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKLKEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEM
        PD  TF+ LI+   L G   +A EL D M + G  P ++T   L+ GL LN K+ +A+ L + MV   G  PN   Y  ++K  C  G+  LA EL  +M
Subjt:  PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKLKEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEM

Query:  VTNKVKMDSAIYSTLISALFKHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVISFNSIIGELCKKGKWNEAID
           K+K+D+  YS +I  L K G  +   ++  EM   G K D + Y  +I G C     +   ++L +M+++   PDV++F+++I    K+GK  EA +
Subjt:  VTNKVKMDSAIYSTLISALFKHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVISFNSIIGELCKKGKWNEAID

Query:  LLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEMIFKGYVPRSESINKLVDGLCQ
        L ++M +RG SPD V+Y +L DG C+  QL KA  +LD M+ KG  P   + N L++G C+
Subjt:  LLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEMIFKGYVPRSESINKLVDGLCQ

Q9FIT7 Pentatricopeptide repeat-containing protein At5g61990, mitochondrial

6.6e-45

33.9

Show/hide

Query:  PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKLKEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEM
        PD   +N LI         D+A     EM + G+ PN  T+G  I G    S+   A K  ++M R CG+LPN  +   LI  +C  G++I A      M
Subjt:  PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKLKEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEM

Query:  VTNKVKMDSAIYSTLISALFKHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVISFNSIIGELCKKGKWNEAID
        V   +  D+  Y+ L++ LFK+ + ++  +I  EMR  G  PD  +Y  +I+G  K  +++ A  + DEMVE+G  P+VI +N ++G  C+ G+  +A +
Subjt:  VTNKVKMDSAIYSTLISALFKHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVISFNSIIGELCKKGKWNEAID

Query:  LLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEMIFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK
        LL++M  +G  P+ V+Y T+ DG C++  L +A  + DEM  KG VP S     LVDG C+  DVE    +  +  +G A +   +  +I  V K
Subjt:  LLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEMIFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK

Q9MAG8 Putative pentatricopeptide repeat-containing protein At1g53330

8.2e-96

57.97

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Query:  PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKLKEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEM
        PDACT+NILIH     G  DDA +LFDEM K+ + P  VTFGTLI+GL  +S++KEALK+K DM++V G+ P   IYA+LIK  C IGEL  AF+LK+E 
Subjt:  PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKLKEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEM

Query:  VTNKVKMDSAIYSTLISALFKHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVISFNSIIGELCKKGKWNEAID
           K+K+D+AIYSTLIS+L K GR  EV  IL EM E GCKPDTVTYN +I+G C END ESA RVLDEMVEKG KPDVIS+N I+G   +  KW EA  
Subjt:  VTNKVKMDSAIYSTLISALFKHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVISFNSIIGELCKKGKWNEAID

Query:  LLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEMIFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK
        L EDMPRRGCSPD +SYR +FDGLCE +Q ++A  ILDEM+FKGY PR + +   +  LC+   +E+L  V+ SL RG A + D W+ +I  +CK
Subjt:  LLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEMIFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK

Arabidopsis top hits

e value

%identity

Alignment

AT1G09900.1 Pentatricopeptide repeat (PPR-like) superfamily protein

8.6e-48

34.21

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Query:  PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKLKEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEM
        PD  T+ ILI A         A +L DEMR RG  P+VVT+  L+ G+    +L EA+K   DM    G  PN   +  +++  C  G  + A +L  +M
Subjt:  PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKLKEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEM

Query:  VTNKVKMDSAIYSTLISALFKHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVISFNSIIGELCKKGKWNEAID
        +          ++ LI+ L + G      DIL +M ++GC+P++++YN ++ G CKE  ++ A   L+ MV +GC PD++++N+++  LCK GK  +A++
Subjt:  VTNKVKMDSAIYSTLISALFKHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVISFNSIIGELCKKGKWNEAID

Query:  LLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEMIFKGYVPRSESINKLVDGLCQECDVE
        +L  +  +GCSP +++Y T+ DGL +  +  KA  +LDEM  K   P + + + LV GL +E  V+
Subjt:  LLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEMIFKGYVPRSESINKLVDGLCQECDVE

AT1G12300.1 Tetratricopeptide repeat (TPR)-like superfamily protein

4.7e-46

34.48

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Query:  PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKLKEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEM
        P+  TF+ LI+   L G   +A EL D M + G  P+++T  TL+ GL L+ K  EA+ L + MV   G  PNA  Y  ++   C  G+  LA EL  +M
Subjt:  PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKLKEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEM

Query:  VTNKVKMDSAIYSTLISALFKHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVISFNSIIGELCKKGKWNEAID
            +K+D+  YS +I  L KHG  +   ++  EM   G   + +TYN +I G C     +   ++L +M+++   P+V++F+ +I    K+GK  EA +
Subjt:  VTNKVKMDSAIYSTLISALFKHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVISFNSIIGELCKKGKWNEAID

Query:  LLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEMIFKGYVPRSESINKLVDGLCQ
        L ++M  RG +PD ++Y +L DG C+   L KA  ++D M+ KG  P   + N L++G C+
Subjt:  LLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEMIFKGYVPRSESINKLVDGLCQ

AT1G12620.1 Pentatricopeptide repeat (PPR) superfamily protein

1.9e-47

36.4

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Query:  PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKLKEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEM
        PD  TF+ LI+   L G   +A EL D M + G  P ++T   L+ GL LN K+ +A+ L + MV   G  PN   Y  ++K  C  G+  LA EL  +M
Subjt:  PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKLKEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEM

Query:  VTNKVKMDSAIYSTLISALFKHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVISFNSIIGELCKKGKWNEAID
           K+K+D+  YS +I  L K G  +   ++  EM   G K D + Y  +I G C     +   ++L +M+++   PDV++F+++I    K+GK  EA +
Subjt:  VTNKVKMDSAIYSTLISALFKHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVISFNSIIGELCKKGKWNEAID

Query:  LLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEMIFKGYVPRSESINKLVDGLCQ
        L ++M +RG SPD V+Y +L DG C+  QL KA  +LD M+ KG  P   + N L++G C+
Subjt:  LLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEMIFKGYVPRSESINKLVDGLCQ

AT1G53330.1 Pentatricopeptide repeat (PPR) superfamily protein

5.8e-97

57.97

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Query:  PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKLKEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEM
        PDACT+NILIH     G  DDA +LFDEM K+ + P  VTFGTLI+GL  +S++KEALK+K DM++V G+ P   IYA+LIK  C IGEL  AF+LK+E 
Subjt:  PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKLKEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEM

Query:  VTNKVKMDSAIYSTLISALFKHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVISFNSIIGELCKKGKWNEAID
           K+K+D+AIYSTLIS+L K GR  EV  IL EM E GCKPDTVTYN +I+G C END ESA RVLDEMVEKG KPDVIS+N I+G   +  KW EA  
Subjt:  VTNKVKMDSAIYSTLISALFKHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVISFNSIIGELCKKGKWNEAID

Query:  LLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEMIFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK
        L EDMPRRGCSPD +SYR +FDGLCE +Q ++A  ILDEM+FKGY PR + +   +  LC+   +E+L  V+ SL RG A + D W+ +I  +CK
Subjt:  LLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEMIFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK

AT5G61990.1 Pentatricopeptide repeat (PPR) superfamily protein

4.7e-46

33.9

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Query:  PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKLKEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEM
        PD   +N LI         D+A     EM + G+ PN  T+G  I G    S+   A K  ++M R CG+LPN  +   LI  +C  G++I A      M
Subjt:  PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKLKEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEM

Query:  VTNKVKMDSAIYSTLISALFKHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVISFNSIIGELCKKGKWNEAID
        V   +  D+  Y+ L++ LFK+ + ++  +I  EMR  G  PD  +Y  +I+G  K  +++ A  + DEMVE+G  P+VI +N ++G  C+ G+  +A +
Subjt:  VTNKVKMDSAIYSTLISALFKHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVISFNSIIGELCKKGKWNEAID

Query:  LLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEMIFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK
        LL++M  +G  P+ V+Y T+ DG C++  L +A  + DEM  KG VP S     LVDG C+  DVE    +  +  +G A +   +  +I  V K
Subjt:  LLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEMIFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

CCAGATGCCTGTACTTTTAACATTTTGATTCATGCTGCCTATTTATGTGGGAATTCGGATGATGCATGGGAGCTGTTCGATGAAATGCGAAAGAGAGGTATTCACCCTAA
TGTGGTCACTTTTGGAACTTTGATTTATGGCCTTTCTCTGAATTCTAAGTTGAAAGAAGCATTGAAATTGAAAGAAGATATGGTTAGAGTGTGTGGGATTTTGCCTAATG
CGTCTATATACGCTACTTTGATTAAAGGGTTCTGTGGGATTGGTGAATTGATTTTGGCTTTCGAACTAAAGGAAGAGATGGTGACAAACAAGGTCAAAATGGACTCAGCG
ATTTATTCTACTTTAATTAGCGCGCTCTTTAAACATGGAAGAAAAGAAGAAGTTTGTGACATTTTAGGAGAGATGAGAGAGAATGGGTGCAAACCCGATACGGTAACCTA
CAATGCCATGATCAGTGGGCACTGTAAAGAAAACGATCTCGAATCTGCGTTTAGAGTTTTGGATGAGATGGTGGAGAAAGGGTGTAAGCCAGATGTGATTAGTTTCAATT
CTATCATCGGAGAGTTATGCAAAAAGGGGAAATGGAATGAAGCTATTGACTTACTTGAAGATATGCCTAGACGTGGCTGCTCTCCTGATGTGGTATCATACAGGACACTT
TTCGATGGGCTTTGTGAAACGATGCAGTTACAGAAAGCAACTTCCATACTGGACGAGATGATCTTCAAGGGTTATGTGCCTCGTTCTGAAAGCATAAACAAACTCGTCGA
CGGGTTATGCCAGGAATGCGATGTGGAGCTGTTGTGGATGGTTTTAGACAGTCTAGGAAGAGGAAATGCCATGAATATGGACACATGGGCTAGAGTTATTGCTTTGGTTT
GCAAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKLKEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEMVTNKVKMDSA
IYSTLISALFKHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVISFNSIIGELCKKGKWNEAIDLLEDMPRRGCSPDVVSYRTL
FDGLCETMQLQKATSILDEMIFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK

MS021217 (gene) of Bitter gourd (TR) v1 genome