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MS021236 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS021236
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUbiquitin domain-containing protein
Genome locationscaffold358:371936..373778
RNA-Seq ExpressionMS021236
SyntenyMS021236
Gene Ontology termsNA
InterPro domainsIPR032752 - DC-UbP/UBTD2, N-terminal domain
IPR038169 - DC-UbP/UBTD2, N-terminal domain superfamily
IPR039869 - Ubiquitin domain-containing protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022144511.1 ubiquitin domain-containing protein 1-like [Momordica charantia]6.0e-4098.81Show/hide
Query:  GPVKKIRKPKAWKHPQPITKTELVQMRDEFWDTAPHYGGRKEIWDALRAAAEADLTLAQAIVDSAGVIVQSADLTICYDERGSK
        GPVKKIRKPKAWKHPQPITKTELVQMRDEFWDTAPHYGGRKEIWDALRAAAEADLTLAQAIVDSAGVIVQSADLTICYDERG+K
Subjt:  GPVKKIRKPKAWKHPQPITKTELVQMRDEFWDTAPHYGGRKEIWDALRAAAEADLTLAQAIVDSAGVIVQSADLTICYDERGSK

XP_035549832.1 ubiquitin domain-containing protein 1-like isoform X1 [Juglans regia]3.3e-3887.64Show/hide
Query:  VLFNSGPVKKIRKPKAWKHPQPITKTELVQMRDEFWDTAPHYGGRKEIWDALRAAAEADLTLAQAIVDSAGVIVQSADLTICYDERGSK
        V+F  G VKKIRKPK WKHPQPITKT+L+Q+RDEFWDTAPHYGGRKEIWDALRAAAEADLTL+QAIV+SAGVIVQSADLTICYDERG+K
Subjt:  VLFNSGPVKKIRKPKAWKHPQPITKTELVQMRDEFWDTAPHYGGRKEIWDALRAAAEADLTLAQAIVDSAGVIVQSADLTICYDERGSK

XP_038898666.1 ubiquitin domain-containing protein 1-like [Benincasa hispida]2.5e-3892.94Show/hide
Query:  SGPVKKIRKPKAWKHPQPITKTELVQMRDEFWDTAPHYGGRKEIWDALRAAAEADLTLAQAIVDSAGVIVQSADLTICYDERGSK
        +GPVKKIRKPK WKHPQPI+KT+LV+MRDEFWDTAPHYGGRKEIWDALRAAAEADLTLAQAIVDSAGVIVQSADLTICYDERG+K
Subjt:  SGPVKKIRKPKAWKHPQPITKTELVQMRDEFWDTAPHYGGRKEIWDALRAAAEADLTLAQAIVDSAGVIVQSADLTICYDERGSK

XP_040989150.1 ubiquitin domain-containing protein 1-like isoform X1 [Juglans microcarpa x Juglans regia]1.5e-3888.76Show/hide
Query:  VLFNSGPVKKIRKPKAWKHPQPITKTELVQMRDEFWDTAPHYGGRKEIWDALRAAAEADLTLAQAIVDSAGVIVQSADLTICYDERGSK
        V+F  G VKKIRKPK WKHPQPITKT+LVQ+RDEFWDTAPHYGGRKEIWDALRAAAEADLTL+QAIV+SAGVIVQSADLTICYDERG+K
Subjt:  VLFNSGPVKKIRKPKAWKHPQPITKTELVQMRDEFWDTAPHYGGRKEIWDALRAAAEADLTLAQAIVDSAGVIVQSADLTICYDERGSK

XP_042953289.1 ubiquitin domain-containing protein 1-like isoform X1 [Carya illinoinensis]1.5e-3888.76Show/hide
Query:  VLFNSGPVKKIRKPKAWKHPQPITKTELVQMRDEFWDTAPHYGGRKEIWDALRAAAEADLTLAQAIVDSAGVIVQSADLTICYDERGSK
        V+F  G VKKIRKPK WKHPQPITKT+L+Q+RDEFWDTAPHYGGRKEIWDALRAAAEADLTLAQAIV+SAGVIVQSADLTICYDERG+K
Subjt:  VLFNSGPVKKIRKPKAWKHPQPITKTELVQMRDEFWDTAPHYGGRKEIWDALRAAAEADLTLAQAIVDSAGVIVQSADLTICYDERGSK

TrEMBL top hitse value%identityAlignment
A0A5N6RSN1 UBD domain-containing protein1.8e-3792.86Show/hide
Query:  GPVKKIRKPKAWKHPQPITKTELVQMRDEFWDTAPHYGGRKEIWDALRAAAEADLTLAQAIVDSAGVIVQSADLTICYDERGSK
        G VKKIRKPK WKHPQPITKT L+Q+RDEFWDTAPHYGGRKEIWDALRAAAEADLTLAQAIVDSAGVIVQSADLTICYDERG+K
Subjt:  GPVKKIRKPKAWKHPQPITKTELVQMRDEFWDTAPHYGGRKEIWDALRAAAEADLTLAQAIVDSAGVIVQSADLTICYDERGSK

A0A6J1CTM1 ubiquitin domain-containing protein 1-like2.9e-4098.81Show/hide
Query:  GPVKKIRKPKAWKHPQPITKTELVQMRDEFWDTAPHYGGRKEIWDALRAAAEADLTLAQAIVDSAGVIVQSADLTICYDERGSK
        GPVKKIRKPKAWKHPQPITKTELVQMRDEFWDTAPHYGGRKEIWDALRAAAEADLTLAQAIVDSAGVIVQSADLTICYDERG+K
Subjt:  GPVKKIRKPKAWKHPQPITKTELVQMRDEFWDTAPHYGGRKEIWDALRAAAEADLTLAQAIVDSAGVIVQSADLTICYDERGSK

A0A6J1FML0 ubiquitin domain-containing protein 1-like6.1e-3892.86Show/hide
Query:  GPVKKIRKPKAWKHPQPITKTELVQMRDEFWDTAPHYGGRKEIWDALRAAAEADLTLAQAIVDSAGVIVQSADLTICYDERGSK
        GPVKKIRKPKAWKHPQPITKT+L +MRDEFWDTAPHYGG KEIWDALRAAAEADLTLAQAIVDSAGVIVQSADLTICYDERG++
Subjt:  GPVKKIRKPKAWKHPQPITKTELVQMRDEFWDTAPHYGGRKEIWDALRAAAEADLTLAQAIVDSAGVIVQSADLTICYDERGSK

A0A6J1IYX4 ubiquitin domain-containing protein 1-like6.1e-3892.86Show/hide
Query:  GPVKKIRKPKAWKHPQPITKTELVQMRDEFWDTAPHYGGRKEIWDALRAAAEADLTLAQAIVDSAGVIVQSADLTICYDERGSK
        GPVKKIRKPKAWKHPQPITKT+L +MRDEFWDTAPHYGG KEIWDALRAAAEADLTLAQAIVDSAGVIVQSADLTICYDERG++
Subjt:  GPVKKIRKPKAWKHPQPITKTELVQMRDEFWDTAPHYGGRKEIWDALRAAAEADLTLAQAIVDSAGVIVQSADLTICYDERGSK

A0A6P9F582 ubiquitin domain-containing protein 1-like isoform X11.6e-3887.64Show/hide
Query:  VLFNSGPVKKIRKPKAWKHPQPITKTELVQMRDEFWDTAPHYGGRKEIWDALRAAAEADLTLAQAIVDSAGVIVQSADLTICYDERGSK
        V+F  G VKKIRKPK WKHPQPITKT+L+Q+RDEFWDTAPHYGGRKEIWDALRAAAEADLTL+QAIV+SAGVIVQSADLTICYDERG+K
Subjt:  VLFNSGPVKKIRKPKAWKHPQPITKTELVQMRDEFWDTAPHYGGRKEIWDALRAAAEADLTLAQAIVDSAGVIVQSADLTICYDERGSK

SwissProt top hitse value%identityAlignment
Q4V8W7 Ubiquitin domain-containing protein 17.4e-1756.32Show/hide
Query:  PVKKIRKPKAWKHPQPITKTELVQMRDEFWDTAPHYGGRKEIWDALRAAAEA----DLTLAQAIVDSAGVIVQSADLTICYDERGSK
        P+KK  KPK WK   P+T+ +L   RDEFWDTAP + GRKEIWDAL+AAA A    D  LAQAIVD A + +    LT CYDE G++
Subjt:  PVKKIRKPKAWKHPQPITKTELVQMRDEFWDTAPHYGGRKEIWDALRAAAEA----DLTLAQAIVDSAGVIVQSADLTICYDERGSK

Q5EAE3 Ubiquitin domain-containing protein 29.7e-1755.17Show/hide
Query:  PVKKIRKPKAWKHPQPITKTELVQMRDEFWDTAPHYGGRKEIWDALRAAAEA----DLTLAQAIVDSAGVIVQSADLTICYDERGSK
        P+KK  KPK WK   P+T  +L   RDEFWDTAP + GRKEIWDAL+AAA A    D  LAQAI+D A + +    LT CYDE G++
Subjt:  PVKKIRKPKAWKHPQPITKTELVQMRDEFWDTAPHYGGRKEIWDALRAAAEA----DLTLAQAIVDSAGVIVQSADLTICYDERGSK

Q6DG43 Ubiquitin domain-containing protein 21.3e-1654.02Show/hide
Query:  PVKKIRKPKAWKHPQPITKTELVQMRDEFWDTAPHYGGRKEIWDALRAAAEA----DLTLAQAIVDSAGVIVQSADLTICYDERGSK
        P+K+  KPK WK   P+T  +L   RDEFWDTAP + GRKEIWDAL+AAA+A    D  LAQAI+D A + +    LT CYDE G++
Subjt:  PVKKIRKPKAWKHPQPITKTELVQMRDEFWDTAPHYGGRKEIWDALRAAAEA----DLTLAQAIVDSAGVIVQSADLTICYDERGSK

Q6PGH0 Ubiquitin domain-containing protein 29.7e-1755.17Show/hide
Query:  PVKKIRKPKAWKHPQPITKTELVQMRDEFWDTAPHYGGRKEIWDALRAAAEA----DLTLAQAIVDSAGVIVQSADLTICYDERGSK
        P+KK  KPK WK   P+T  +L   RDEFWDTAP + GRKEIWDAL+AAA A    D  LAQAI+D A + +    LT CYDE G++
Subjt:  PVKKIRKPKAWKHPQPITKTELVQMRDEFWDTAPHYGGRKEIWDALRAAAEA----DLTLAQAIVDSAGVIVQSADLTICYDERGSK

Q8WUN7 Ubiquitin domain-containing protein 29.7e-1755.17Show/hide
Query:  PVKKIRKPKAWKHPQPITKTELVQMRDEFWDTAPHYGGRKEIWDALRAAAEA----DLTLAQAIVDSAGVIVQSADLTICYDERGSK
        P+KK  KPK WK   P+T  +L   RDEFWDTAP + GRKEIWDAL+AAA A    D  LAQAI+D A + +    LT CYDE G++
Subjt:  PVKKIRKPKAWKHPQPITKTELVQMRDEFWDTAPHYGGRKEIWDALRAAAEA----DLTLAQAIVDSAGVIVQSADLTICYDERGSK

Arabidopsis top hitse value%identityAlignment
AT1G16960.1 Ubiquitin domain-containing protein9.0e-3476.47Show/hide
Query:  GPVKKIRKPKAWKHPQPITKTELVQMRDEFWDTAPHYGGRKEIWDALRAAAEA-DLTLAQAIVDSAGVIVQSADLTICYDERGSK
        G  +KIR+PK WKHPQPI++ EL QMR+EFWDTAPHYGG+KEIWDALRAAAE  DL+LAQ I++SAGVIVQ+ DLTICYDE+GSK
Subjt:  GPVKKIRKPKAWKHPQPITKTELVQMRDEFWDTAPHYGGRKEIWDALRAAAEA-DLTLAQAIVDSAGVIVQSADLTICYDERGSK

AT1G53400.1 Ubiquitin domain-containing protein1.0e-3783.33Show/hide
Query:  GPVKKIRKPKAWKHPQPITKTELVQMRDEFWDTAPHYGGRKEIWDALRAAAEADLTLAQAIVDSAGVIVQSADLTICYDERGSK
        G VKKIRKPK WKH QPITK EL+++R+EFWDTAPHYGGRKEIWDALRAAAEAD++LAQAIVDSAGVIVQ+ DLT+CYDERG+K
Subjt:  GPVKKIRKPKAWKHPQPITKTELVQMRDEFWDTAPHYGGRKEIWDALRAAAEADLTLAQAIVDSAGVIVQSADLTICYDERGSK

AT5G45740.1 Ubiquitin domain-containing protein4.2e-3171.6Show/hide
Query:  KKIRKPKAWKHPQPITKTELVQMRDEFWDTAPHYGGRKEIWDALRAAAEADLTLAQAIVDSAGVIVQSADLTICYDERGSK
        KKI KPK W H +PIT+ +L  MR+EFWDT+PHYGG++EIW+ALRAAAEADL LAQ IVDSAGVIVQ+ DLT+C+DERG++
Subjt:  KKIRKPKAWKHPQPITKTELVQMRDEFWDTAPHYGGRKEIWDALRAAAEADLTLAQAIVDSAGVIVQSADLTICYDERGSK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AACTCATACCATCCTTTTATTCACTGGAAGGTTCTTTTTAATTCAGGGCCTGTGAAAAAAATTCGGAAGCCTAAAGCTTGGAAGCATCCCCAGCCAATAACGAAGACAGA
GCTTGTGCAGATGCGTGATGAATTTTGGGATACTGCACCTCACTATGGTGGCAGAAAAGAGATCTGGGATGCCCTTAGAGCTGCTGCTGAAGCTGATCTAACGCTGGCAC
AAGCAATTGTGGATAGTGCAGGGGTCATTGTACAGAGTGCCGATTTAACAATTTGTTATGATGAGAGAGGTAGTAAA
mRNA sequenceShow/hide mRNA sequence
AACTCATACCATCCTTTTATTCACTGGAAGGTTCTTTTTAATTCAGGGCCTGTGAAAAAAATTCGGAAGCCTAAAGCTTGGAAGCATCCCCAGCCAATAACGAAGACAGA
GCTTGTGCAGATGCGTGATGAATTTTGGGATACTGCACCTCACTATGGTGGCAGAAAAGAGATCTGGGATGCCCTTAGAGCTGCTGCTGAAGCTGATCTAACGCTGGCAC
AAGCAATTGTGGATAGTGCAGGGGTCATTGTACAGAGTGCCGATTTAACAATTTGTTATGATGAGAGAGGTAGTAAA
Protein sequenceShow/hide protein sequence
NSYHPFIHWKVLFNSGPVKKIRKPKAWKHPQPITKTELVQMRDEFWDTAPHYGGRKEIWDALRAAAEADLTLAQAIVDSAGVIVQSADLTICYDERGSK