; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS021269 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS021269
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNA exonuclease 4
Genome locationscaffold358:628590..631153
RNA-Seq ExpressionMS021269
SyntenyMS021269
Gene Ontology termsGO:0006364 - rRNA processing (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008408 - 3'-5' exonuclease activity (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR013520 - Exonuclease, RNase T/DNA polymerase III
IPR036397 - Ribonuclease H superfamily
IPR037431 - RNA exonuclease 4, DEDDh 3'-5' exonuclease domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008463709.1 PREDICTED: RNA exonuclease 4 [Cucumis melo]6.1e-11777.62Show/hide
Query:  QLKNSPKPKQMNPNWALLQQVLLLPSIPPLPLSRSIAYFHLLILQKLKSHASKHPRFSNVPKFD-TSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFSVT
        QLK +PKPK +NPNWA+LQ                         QKLK H S H + S VPK + +S ++LGKRKERSDV+S  S KN+LIPVNDDFS+T
Subjt:  QLKNSPKPKQMNPNWALLQQVLLLPSIPPLPLSRSIAYFHLLILQKLKSHASKHPRFSNVPKFD-TSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFSVT

Query:  DVVAMDCEMVGVGQGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALRNDFKALLLSHPKK
        D VAMDCEMVGVGQGN+SALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQK+VA+LIKGKI+VGHALRND KALLLSHPK 
Subjt:  DVVAMDCEMVGVGQGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALRNDFKALLLSHPKK

Query:  DLRDTSEYQFFQKEGCRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF
        D+RDTSEYQFFQKEGC+RALRHLAAEFLGV+IQNGEHCP+EDARSAMLLYQKKRKEWEKS+K+E KLKLKQKKRKPRKKSKDGGGF
Subjt:  DLRDTSEYQFFQKEGCRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF

XP_022139347.1 RNA exonuclease 4 [Momordica charantia]2.1e-13890.97Show/hide
Query:  PQPQLKNSPKPKQMNPNWALLQQVLLLPSIPPLPLSRSIAYFHLLILQKLKSHASKHPRFSNVPKFDTSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFS
        PQPQLKNSPKPKQMNPNWALLQ                         QKLKSHASKHPRFSNVPKFDTSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFS
Subjt:  PQPQLKNSPKPKQMNPNWALLQQVLLLPSIPPLPLSRSIAYFHLLILQKLKSHASKHPRFSNVPKFDTSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFS

Query:  VTDVVAMDCEMVGVGQGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALRNDFKALLLSHP
        VTDVVAMDCEMVGVGQGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHAL NDFKALLLSHP
Subjt:  VTDVVAMDCEMVGVGQGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALRNDFKALLLSHP

Query:  KKDLRDTSEYQFFQKEGCRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF
        KKDLRDTSEYQFFQKEGCRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF
Subjt:  KKDLRDTSEYQFFQKEGCRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF

XP_038897120.1 RNA exonuclease 4 isoform X1 [Benincasa hispida]5.1e-11678.12Show/hide
Query:  QPQLKNSPKPKQMNPNWALLQQVLLLPSIPPLPLSRSIAYFHLLILQKLKSHASKHPRFSNVPKFD-TSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFS
        + QLK + KPK +NPNWALLQQVLL                 ++++ KLK   S H R S VPK + +S ++LGKRKERSDV+S  S KN+LIPVNDDFS
Subjt:  QPQLKNSPKPKQMNPNWALLQQVLLLPSIPPLPLSRSIAYFHLLILQKLKSHASKHPRFSNVPKFD-TSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFS

Query:  VTDVVAMDCEMVGVGQGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALRNDFKALLLSHP
        +TDVVAMDCEMVGVGQGN+SALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRP DLKKAKDF TVQK+VA+LIKGKI+VGHALRND KALLLSHP
Subjt:  VTDVVAMDCEMVGVGQGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALRNDFKALLLSHP

Query:  KKDLRDTSEYQFFQKEGCRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF
        K+D+RDTSEYQFFQKEGCRRALRHLAAEFLGVEIQNGEHCP+EDARSAMLLYQKKRKEWEKS+K E+KLKLKQKKRK RKKSKDGGGF
Subjt:  KKDLRDTSEYQFFQKEGCRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF

XP_038897121.1 RNA exonuclease 4 isoform X2 [Benincasa hispida]8.8e-11678.12Show/hide
Query:  QPQLKNSPKPKQMNPNWALLQQVLLLPSIPPLPLSRSIAYFHLLILQKLKSHASKHPRFSNVPKFD-TSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFS
        + QLK + KPK +NPNWALLQQVL                  L+++ KLK   S H R S VPK + +S ++LGKRKERSDV+S  S KN+LIPVNDDFS
Subjt:  QPQLKNSPKPKQMNPNWALLQQVLLLPSIPPLPLSRSIAYFHLLILQKLKSHASKHPRFSNVPKFD-TSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFS

Query:  VTDVVAMDCEMVGVGQGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALRNDFKALLLSHP
        +TDVVAMDCEMVGVGQGN+SALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRP DLKKAKDF TVQK+VA+LIKGKI+VGHALRND KALLLSHP
Subjt:  VTDVVAMDCEMVGVGQGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALRNDFKALLLSHP

Query:  KKDLRDTSEYQFFQKEGCRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF
        K+D+RDTSEYQFFQKEGCRRALRHLAAEFLGVEIQNGEHCP+EDARSAMLLYQKKRKEWEKS+K E+KLKLKQKKRK RKKSKDGGGF
Subjt:  KKDLRDTSEYQFFQKEGCRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF

XP_038897122.1 RNA exonuclease 4 isoform X3 [Benincasa hispida]1.8e-11377.08Show/hide
Query:  QPQLKNSPKPKQMNPNWALLQQVLLLPSIPPLPLSRSIAYFHLLILQKLKSHASKHPRFSNVPKFD-TSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFS
        + QLK + KPK +NPNWALLQ                         QKLK   S H R S VPK + +S ++LGKRKERSDV+S  S KN+LIPVNDDFS
Subjt:  QPQLKNSPKPKQMNPNWALLQQVLLLPSIPPLPLSRSIAYFHLLILQKLKSHASKHPRFSNVPKFD-TSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFS

Query:  VTDVVAMDCEMVGVGQGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALRNDFKALLLSHP
        +TDVVAMDCEMVGVGQGN+SALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRP DLKKAKDF TVQK+VA+LIKGKI+VGHALRND KALLLSHP
Subjt:  VTDVVAMDCEMVGVGQGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALRNDFKALLLSHP

Query:  KKDLRDTSEYQFFQKEGCRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF
        K+D+RDTSEYQFFQKEGCRRALRHLAAEFLGVEIQNGEHCP+EDARSAMLLYQKKRKEWEKS+K E+KLKLKQKKRK RKKSKDGGGF
Subjt:  KKDLRDTSEYQFFQKEGCRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF

TrEMBL top hitse value%identityAlignment
A0A0A0KZK3 RNA exonuclease 42.6e-11376.57Show/hide
Query:  QLKNSPKPKQMNPNWALLQQVLLLPSIPPLPLSRSIAYFHLLILQKLKSHASKHPRFSNVPKFD-TSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFSVT
        QLK +PKPK +NPNWALLQ                         QKL  H S H   + V K + +S ++LGKRKERSDV+S  S KN+LIPVNDDFS+T
Subjt:  QLKNSPKPKQMNPNWALLQQVLLLPSIPPLPLSRSIAYFHLLILQKLKSHASKHPRFSNVPKFD-TSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFSVT

Query:  DVVAMDCEMVGVGQGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALRNDFKALLLSHPKK
        D VAMDCEMVGVGQGN+SALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQK+VA+LIKGK++VGHALRND KALLLSHPK 
Subjt:  DVVAMDCEMVGVGQGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALRNDFKALLLSHPKK

Query:  DLRDTSEYQFFQKEGCRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF
        D+RDTSEYQFFQKEGC+RALRHLAAEFL VEIQNGEHCP+EDARSAMLLYQKKRKEWEKS+K+E KLKLKQKKRKPRKKSKDGGGF
Subjt:  DLRDTSEYQFFQKEGCRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF

A0A1S3CJW0 RNA exonuclease 42.9e-11777.62Show/hide
Query:  QLKNSPKPKQMNPNWALLQQVLLLPSIPPLPLSRSIAYFHLLILQKLKSHASKHPRFSNVPKFD-TSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFSVT
        QLK +PKPK +NPNWA+LQ                         QKLK H S H + S VPK + +S ++LGKRKERSDV+S  S KN+LIPVNDDFS+T
Subjt:  QLKNSPKPKQMNPNWALLQQVLLLPSIPPLPLSRSIAYFHLLILQKLKSHASKHPRFSNVPKFD-TSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFSVT

Query:  DVVAMDCEMVGVGQGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALRNDFKALLLSHPKK
        D VAMDCEMVGVGQGN+SALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQK+VA+LIKGKI+VGHALRND KALLLSHPK 
Subjt:  DVVAMDCEMVGVGQGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALRNDFKALLLSHPKK

Query:  DLRDTSEYQFFQKEGCRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF
        D+RDTSEYQFFQKEGC+RALRHLAAEFLGV+IQNGEHCP+EDARSAMLLYQKKRKEWEKS+K+E KLKLKQKKRKPRKKSKDGGGF
Subjt:  DLRDTSEYQFFQKEGCRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF

A0A5A7VEJ2 RNA exonuclease 41.4e-11185.89Show/hide
Query:  KLKSHASKHPRFSNVPKFD-TSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALGRVTLVNKWGNVIYDEFVRPIERVV
        KLK H S H + S VPK + +S ++LGKRKERSDV+S  S KN+LIPVNDDFS+TD VAMDCEMVGVGQGN+SALGRVTLVNKWGNVIYDEFVRPIERVV
Subjt:  KLKSHASKHPRFSNVPKFD-TSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALGRVTLVNKWGNVIYDEFVRPIERVV

Query:  DFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALRNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALRHLAAEFLGVEIQNGEHCPIEDARS
        DFRTQISGIRPCDLKKAKDFPTVQK+VA+LIKGKI+VGHALRND KALLLSHPK D+RDTSEYQFFQKEGC+RALRHLAAEFLGV+IQNGEHCP+EDARS
Subjt:  DFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALRNDFKALLLSHPKKDLRDTSEYQFFQKEGCRRALRHLAAEFLGVEIQNGEHCPIEDARS

Query:  AMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF
        AMLLYQKKRKEWEKS+K+E KLKLKQKKRKPRKKSKDGGGF
Subjt:  AMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF

A0A6J1CDP9 RNA exonuclease 41.0e-13890.97Show/hide
Query:  PQPQLKNSPKPKQMNPNWALLQQVLLLPSIPPLPLSRSIAYFHLLILQKLKSHASKHPRFSNVPKFDTSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFS
        PQPQLKNSPKPKQMNPNWALLQ                         QKLKSHASKHPRFSNVPKFDTSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFS
Subjt:  PQPQLKNSPKPKQMNPNWALLQQVLLLPSIPPLPLSRSIAYFHLLILQKLKSHASKHPRFSNVPKFDTSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFS

Query:  VTDVVAMDCEMVGVGQGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALRNDFKALLLSHP
        VTDVVAMDCEMVGVGQGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHAL NDFKALLLSHP
Subjt:  VTDVVAMDCEMVGVGQGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALRNDFKALLLSHP

Query:  KKDLRDTSEYQFFQKEGCRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF
        KKDLRDTSEYQFFQKEGCRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF
Subjt:  KKDLRDTSEYQFFQKEGCRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF

E5GBF8 RNA exonuclease 42.9e-11777.62Show/hide
Query:  QLKNSPKPKQMNPNWALLQQVLLLPSIPPLPLSRSIAYFHLLILQKLKSHASKHPRFSNVPKFD-TSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFSVT
        QLK +PKPK +NPNWA+LQ                         QKLK H S H + S VPK + +S ++LGKRKERSDV+S  S KN+LIPVNDDFS+T
Subjt:  QLKNSPKPKQMNPNWALLQQVLLLPSIPPLPLSRSIAYFHLLILQKLKSHASKHPRFSNVPKFD-TSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFSVT

Query:  DVVAMDCEMVGVGQGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALRNDFKALLLSHPKK
        D VAMDCEMVGVGQGN+SALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQK+VA+LIKGKI+VGHALRND KALLLSHPK 
Subjt:  DVVAMDCEMVGVGQGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALRNDFKALLLSHPKK

Query:  DLRDTSEYQFFQKEGCRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF
        D+RDTSEYQFFQKEGC+RALRHLAAEFLGV+IQNGEHCP+EDARSAMLLYQKKRKEWEKS+K+E KLKLKQKKRKPRKKSKDGGGF
Subjt:  DLRDTSEYQFFQKEGCRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF

SwissProt top hitse value%identityAlignment
Q08237 RNA exonuclease 42.1e-4050Show/hide
Query:  NDDFSVTDVVAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALRNDFKA
        N    +   +AMDCE VGVG +G  SAL R+++VN +G+V+ DEFV+P E+VV++RT +SGI+P  +K A  F   QKK AD+++G+I+VGHAL++D +A
Subjt:  NDDFSVTDVVAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALRNDFKA

Query:  LLLSHPKKDLRDTSEYQFFQK---EGCRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEK
        L+LSHPK  LRDTS +  F+K   +G   +L+ L  E L + IQ GEH  +EDAR+ MLLY+K++ E+EK
Subjt:  LLLSHPKKDLRDTSEYQFFQK---EGCRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEK

Q6DEW6 RNA exonuclease 42.8e-4046.45Show/hide
Query:  VTDVVAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALRNDFKALLLSH
        +T  VAMDCEMVGVG  G  S L RV++VN +G  +YD++VRP ERV D+RT +SGIRP D+K  + F  VQ +VA++++G+ +VGHA+ ND K L L H
Subjt:  VTDVVAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALRNDFKALLLSH

Query:  PKKDLRDTSEYQFFQK--EGCRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRK
        PKK +RDT +Y+ F++  +  R +L+ L  + L V++Q GEHC ++DA++AM LY  ++K WE ++K++       K + P+K
Subjt:  PKKDLRDTSEYQFFQK--EGCRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRK

Q6PAQ4 RNA exonuclease 41.9e-4147.88Show/hide
Query:  VTDVVAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALRNDFKALLLSH
        +T  +A+DCEMVGVG +G  S   RV++VN++G  +YD++V+P E V D+RT +SGIRP +LK+ ++F  V+K+VA+++KG+I+VGHAL ND K L L H
Subjt:  VTDVVAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALRNDFKALLLSH

Query:  PKKDLRDTSEYQFFQK--EGCRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKS
        PKK +RDT +++ F+   +  R +L+ L+ + LG+ +Q  EHC I+DA++AM LY   ++EWE S
Subjt:  PKKDLRDTSEYQFFQK--EGCRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKS

Q91560 RNA exonuclease 44.3e-4145.95Show/hide
Query:  VTDVVAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALRNDFKALLLSH
        +T  VAMDCEMVGVG  G  S L RV++VN +G  +YD++V+P ERV D+RT +SGIRP D+KK + F  VQK+V+++++G+ +VGHA+ ND K L L H
Subjt:  VTDVVAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALRNDFKALLLSH

Query:  PKKDLRDTSEYQFFQK--EGCRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMK--LKLKQKKRKPRK
        PKK +RDT +Y+ F++  +  R +L+ L  + L V++Q GEHC ++DA++AM LY  ++K WE ++K++    + + +K + P+K
Subjt:  PKKDLRDTSEYQFFQK--EGCRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMK--LKLKQKKRKPRK

Q9GZR2 RNA exonuclease 41.9e-4148.26Show/hide
Query:  VTDVVAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALRNDFKALLLSH
        +T  +A+DCEMVGVG +G  S   RV++VN++G  +YD++V+P E V D+RT +SGIRP +LK+ ++   VQK+VA+++KG+I+VGHAL ND K L L H
Subjt:  VTDVVAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALRNDFKALLLSH

Query:  PKKDLRDTSEYQFF--QKEGCRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKL
        PKK +RDT +Y+ F  Q +  R +LR L+ + LG+++Q  EHC I+DA++AM LY   +KEWE   +    L
Subjt:  PKKDLRDTSEYQFF--QKEGCRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKL

Arabidopsis top hitse value%identityAlignment
AT2G48100.1 Exonuclease family protein4.8e-1935.98Show/hide
Query:  VAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKG--------KIVVGHALRNDFKAL
        +A+DCEMVG G  G       V LV+   NVI+   V+P+  V D+R +I+G+   DLK       V+++V   + G         ++VGH LR+D   L
Subjt:  VAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKG--------KIVVGHALRNDFKAL

Query:  LLSHPKKDLRDTSEYQFFQKEG-CRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKE
         L +P   LRDT++Y    K     ++L++L   +LG +IQ G+H   ED  SAM LY++ R +
Subjt:  LLSHPKKDLRDTSEYQFFQKEG-CRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKE

AT2G48100.2 Exonuclease family protein4.8e-1935.98Show/hide
Query:  VAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKG--------KIVVGHALRNDFKAL
        +A+DCEMVG G  G       V LV+   NVI+   V+P+  V D+R +I+G+   DLK       V+++V   + G         ++VGH LR+D   L
Subjt:  VAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKG--------KIVVGHALRNDFKAL

Query:  LLSHPKKDLRDTSEYQFFQKEG-CRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKE
         L +P   LRDT++Y    K     ++L++L   +LG +IQ G+H   ED  SAM LY++ R +
Subjt:  LLSHPKKDLRDTSEYQFFQKEG-CRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKE

AT2G48100.3 Exonuclease family protein4.8e-1935.98Show/hide
Query:  VAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKG--------KIVVGHALRNDFKAL
        +A+DCEMVG G  G       V LV+   NVI+   V+P+  V D+R +I+G+   DLK       V+++V   + G         ++VGH LR+D   L
Subjt:  VAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKG--------KIVVGHALRNDFKAL

Query:  LLSHPKKDLRDTSEYQFFQKEG-CRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKE
         L +P   LRDT++Y    K     ++L++L   +LG +IQ G+H   ED  SAM LY++ R +
Subjt:  LLSHPKKDLRDTSEYQFFQKEG-CRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKE

AT3G15080.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.7e-8861.27Show/hide
Query:  QPQLKNSPKPKQMNPNWALLQQVLLLPSIPPLPLSRSIAYFHLLILQKLKSHASKHPRFSNVPKFDTSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFSV
        +P+ K +PKP Q+NPNW+LLQ                         QKLKS +  + R S+ P  +  +S+LGKRKER D +      N L PVNDD S+
Subjt:  QPQLKNSPKPKQMNPNWALLQQVLLLPSIPPLPLSRSIAYFHLLILQKLKSHASKHPRFSNVPKFDTSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFSV

Query:  TDVVAMDCEMVGVGQGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALRNDFKALLLSHPK
        TD VAMDCEMVGV QG +SALGRVTLVNKWGNV+YDEFVRP+E VVDFRT ISGIRP DL+KAKDF   Q KVA+LIKGKI+VGHAL ND KALLL+HPK
Subjt:  TDVVAMDCEMVGVGQGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALRNDFKALLLSHPK

Query:  KDLRDTSEYQFFQKEGCRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDG
        KD+RDT EYQ F K   R++L+HLA+E LG +IQNGEHCPI+DAR+AM+LYQK RKEWEK++K + ++ LKQKKRKP+KK+K G
Subjt:  KDLRDTSEYQFFQKEGCRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDG

AT3G27970.1 Exonuclease family protein2.4e-1831.61Show/hide
Query:  VVAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLI--------------KGKIVVGHAL
        VVA+ C+MVG G  G+     RV + ++  NVI+  +V+P   V  +R + +GIRP +L+ A     VQ+K+ + +              K +I+VGH L
Subjt:  VVAMDCEMVGVG-QGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLI--------------KGKIVVGHAL

Query:  RNDFKALLLSHPKKDLRDTSEYQFFQKEG-CRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEK
         +D   L L +P   +RDT++Y    K      +L++L   +LG ++  G   P ED  + M LY + R +  K
Subjt:  RNDFKALLLSHPKKDLRDTSEYQFFQKEG-CRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCTCAGCCTCAGCTCAAGAACAGCCCTAAACCGAAGCAGATGAACCCCAATTGGGCGCTACTCCAACAAGTACTTCTACTTCCCTCCATTCCCCCTTTGCCCCTCTCTCG
TTCTATCGCTTATTTTCATCTTTTGATCCTGCAGAAGCTGAAAAGCCATGCTTCGAAGCATCCCAGGTTCTCTAATGTTCCAAAATTCGATACTTCTAATTCTGTTTTGG
GTAAACGCAAGGAAAGATCTGATGTGGACTCAATTCGTTCTGACAAGAATCTTCTCATTCCAGTGAACGATGACTTTAGTGTTACAGATGTAGTAGCCATGGATTGCGAA
ATGGTTGGTGTGGGTCAAGGTAACAGAAGTGCCCTTGGACGAGTTACACTGGTAAACAAATGGGGAAATGTTATATATGACGAGTTTGTGCGACCCATAGAGCGCGTTGT
TGACTTTCGGACTCAAATTAGTGGCATAAGACCCTGCGACCTGAAGAAAGCGAAGGATTTCCCAACAGTCCAGAAGAAGGTTGCGGACTTGATTAAAGGAAAGATTGTCG
TTGGCCATGCCTTGCGTAATGACTTTAAGGCATTGCTCTTAAGCCATCCCAAGAAAGATTTGAGAGACACCTCCGAGTATCAATTCTTTCAGAAGGAAGGATGTAGAAGA
GCTCTCCGCCATCTGGCAGCCGAGTTTCTTGGTGTCGAGATCCAAAATGGGGAGCATTGTCCTATAGAAGATGCTCGATCTGCAATGCTGCTGTATCAGAAGAAAAGGAA
AGAGTGGGAAAAGAGTCTCAAATCTGAAATGAAGCTCAAATTGAAGCAGAAGAAACGCAAGCCTAGGAAGAAATCCAAGGATGGAGGTGGTTTT
mRNA sequenceShow/hide mRNA sequence
CCTCAGCCTCAGCTCAAGAACAGCCCTAAACCGAAGCAGATGAACCCCAATTGGGCGCTACTCCAACAAGTACTTCTACTTCCCTCCATTCCCCCTTTGCCCCTCTCTCG
TTCTATCGCTTATTTTCATCTTTTGATCCTGCAGAAGCTGAAAAGCCATGCTTCGAAGCATCCCAGGTTCTCTAATGTTCCAAAATTCGATACTTCTAATTCTGTTTTGG
GTAAACGCAAGGAAAGATCTGATGTGGACTCAATTCGTTCTGACAAGAATCTTCTCATTCCAGTGAACGATGACTTTAGTGTTACAGATGTAGTAGCCATGGATTGCGAA
ATGGTTGGTGTGGGTCAAGGTAACAGAAGTGCCCTTGGACGAGTTACACTGGTAAACAAATGGGGAAATGTTATATATGACGAGTTTGTGCGACCCATAGAGCGCGTTGT
TGACTTTCGGACTCAAATTAGTGGCATAAGACCCTGCGACCTGAAGAAAGCGAAGGATTTCCCAACAGTCCAGAAGAAGGTTGCGGACTTGATTAAAGGAAAGATTGTCG
TTGGCCATGCCTTGCGTAATGACTTTAAGGCATTGCTCTTAAGCCATCCCAAGAAAGATTTGAGAGACACCTCCGAGTATCAATTCTTTCAGAAGGAAGGATGTAGAAGA
GCTCTCCGCCATCTGGCAGCCGAGTTTCTTGGTGTCGAGATCCAAAATGGGGAGCATTGTCCTATAGAAGATGCTCGATCTGCAATGCTGCTGTATCAGAAGAAAAGGAA
AGAGTGGGAAAAGAGTCTCAAATCTGAAATGAAGCTCAAATTGAAGCAGAAGAAACGCAAGCCTAGGAAGAAATCCAAGGATGGAGGTGGTTTT
Protein sequenceShow/hide protein sequence
PQPQLKNSPKPKQMNPNWALLQQVLLLPSIPPLPLSRSIAYFHLLILQKLKSHASKHPRFSNVPKFDTSNSVLGKRKERSDVDSIRSDKNLLIPVNDDFSVTDVVAMDCE
MVGVGQGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALRNDFKALLLSHPKKDLRDTSEYQFFQKEGCRR
ALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKLKLKQKKRKPRKKSKDGGGF