; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS021272 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS021272
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionNucleic acid-binding, OB-fold containing protein
Genome locationscaffold358:641097..642362
RNA-Seq ExpressionMS021272
SyntenyMS021272
Gene Ontology termsNA
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146043.1 uncharacterized protein At4g28440 [Cucumis sativus]4.3e-6990.26Show/hide
Query:  MATGKSPTPASPEVQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLTVKVVTSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILLTARNDQVDLVKPETT
        MATGKSPTPAS E+QQ+NAA RPGLRKPVFVK+EQLKPGTNGHTL VKVV+SNTVLQKGRSVSQHLRQTRIAECLVGDETGTIL TARNDQVD VKP TT
Subjt:  MATGKSPTPASPEVQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLTVKVVTSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILLTARNDQVDLVKPETT

Query:  IIIRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE
        II+RNAKIDMFKGSMRLAVDKWGRIEL +P +FVVKEDNNLSLVEYELVNVAEE
Subjt:  IIIRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE

XP_008463705.1 PREDICTED: uncharacterized protein At4g28440-like [Cucumis melo]1.9e-6990.26Show/hide
Query:  MATGKSPTPASPEVQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLTVKVVTSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILLTARNDQVDLVKPETT
        MATGKSPTPAS E+QQ+NAAARPGLRKPVFVK+EQLKPGTNGHTL VKVV+SNTVLQKGRSVSQHLRQTRIAECLVGDETGTIL TARNDQVD VKP TT
Subjt:  MATGKSPTPASPEVQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLTVKVVTSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILLTARNDQVDLVKPETT

Query:  IIIRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE
        II+RNAKIDMFKGSMRLAVDKWGRIE+ +P +FVVKEDNNLSLVEYELVNVAEE
Subjt:  IIIRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE

XP_022139613.1 uncharacterized protein At4g28440-like [Momordica charantia]2.8e-7699.35Show/hide
Query:  MATGKSPTPASPEVQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLTVKVVTSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILLTARNDQVDLVKPETT
        MATGKSPTPASPEVQQSNA ARPGLRKPVFVKVEQLKPGTNGHTLTVKVVTSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILLTARNDQVDLVKPETT
Subjt:  MATGKSPTPASPEVQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLTVKVVTSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILLTARNDQVDLVKPETT

Query:  IIIRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE
        IIIRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE
Subjt:  IIIRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE

XP_023535412.1 uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo]3.0e-6285.71Show/hide
Query:  MATGKSPTPASPEVQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLTVKVVTSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILLTARNDQVDLVKPETT
        MAT KSPTPAS          R GLRKPVFVKVEQLKPGTNGHTL VKVV+SNTVLQKGRSVSQHLRQTRIAECL+GDETGTIL TARNDQVD VKP TT
Subjt:  MATGKSPTPASPEVQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLTVKVVTSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILLTARNDQVDLVKPETT

Query:  IIIRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE
        II+RNAKIDMFKGSMRLAVDKWGRIE+ EP NFVVKEDNNLSLVEYELVNVAEE
Subjt:  IIIRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE

XP_038899654.1 uncharacterized protein At4g28440-like [Benincasa hispida]2.3e-7092.21Show/hide
Query:  MATGKSPTPASPEVQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLTVKVVTSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILLTARNDQVDLVKPETT
        MATGKSPTPAS E+QQSNAAARPGLRKPVFVK+EQLKPGTNGHTL VKVV+SNTVLQKGRSVSQHLRQTRIAECLVGDETGTIL TARNDQVD VKP TT
Subjt:  MATGKSPTPASPEVQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLTVKVVTSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILLTARNDQVDLVKPETT

Query:  IIIRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE
        II+RNAKIDMFKGSMRLAVDKWGRIEL EP +FVVKEDNNLSLVEYELVNVAEE
Subjt:  IIIRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE

TrEMBL top hitse value%identityAlignment
A0A0A0L242 Uncharacterized protein2.1e-6990.26Show/hide
Query:  MATGKSPTPASPEVQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLTVKVVTSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILLTARNDQVDLVKPETT
        MATGKSPTPAS E+QQ+NAA RPGLRKPVFVK+EQLKPGTNGHTL VKVV+SNTVLQKGRSVSQHLRQTRIAECLVGDETGTIL TARNDQVD VKP TT
Subjt:  MATGKSPTPASPEVQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLTVKVVTSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILLTARNDQVDLVKPETT

Query:  IIIRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE
        II+RNAKIDMFKGSMRLAVDKWGRIEL +P +FVVKEDNNLSLVEYELVNVAEE
Subjt:  IIIRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE

A0A1S3CKC4 uncharacterized protein At4g28440-like9.4e-7090.26Show/hide
Query:  MATGKSPTPASPEVQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLTVKVVTSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILLTARNDQVDLVKPETT
        MATGKSPTPAS E+QQ+NAAARPGLRKPVFVK+EQLKPGTNGHTL VKVV+SNTVLQKGRSVSQHLRQTRIAECLVGDETGTIL TARNDQVD VKP TT
Subjt:  MATGKSPTPASPEVQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLTVKVVTSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILLTARNDQVDLVKPETT

Query:  IIIRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE
        II+RNAKIDMFKGSMRLAVDKWGRIE+ +P +FVVKEDNNLSLVEYELVNVAEE
Subjt:  IIIRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE

A0A5D3DWE0 Nucleic acid-binding9.4e-7090.26Show/hide
Query:  MATGKSPTPASPEVQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLTVKVVTSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILLTARNDQVDLVKPETT
        MATGKSPTPAS E+QQ+NAAARPGLRKPVFVK+EQLKPGTNGHTL VKVV+SNTVLQKGRSVSQHLRQTRIAECLVGDETGTIL TARNDQVD VKP TT
Subjt:  MATGKSPTPASPEVQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLTVKVVTSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILLTARNDQVDLVKPETT

Query:  IIIRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE
        II+RNAKIDMFKGSMRLAVDKWGRIE+ +P +FVVKEDNNLSLVEYELVNVAEE
Subjt:  IIIRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE

A0A6J1CG19 uncharacterized protein At4g28440-like1.3e-7699.35Show/hide
Query:  MATGKSPTPASPEVQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLTVKVVTSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILLTARNDQVDLVKPETT
        MATGKSPTPASPEVQQSNA ARPGLRKPVFVKVEQLKPGTNGHTLTVKVVTSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILLTARNDQVDLVKPETT
Subjt:  MATGKSPTPASPEVQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLTVKVVTSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILLTARNDQVDLVKPETT

Query:  IIIRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE
        IIIRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE
Subjt:  IIIRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE

A0A6J1FBC1 uncharacterized protein At4g28440-like1.9e-6285.06Show/hide
Query:  MATGKSPTPASPEVQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLTVKVVTSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILLTARNDQVDLVKPETT
        MAT KSPTPAS          R GLRKPVFVKVEQLKPGTNGHTL VKVV+SNTVLQKGRSVSQHLRQTRIAECL+GDETGTIL TARNDQVD VKP TT
Subjt:  MATGKSPTPASPEVQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLTVKVVTSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILLTARNDQVDLVKPETT

Query:  IIIRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE
        II+RNAKIDMFKGSMRLAVDKWGRIE+ EP NFVVKEDNNLSL+EYELVNVAEE
Subjt:  IIIRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE

SwissProt top hitse value%identityAlignment
O49453 Uncharacterized protein At4g284405.0e-4468.94Show/hide
Query:  RKPVFVKVEQLKPGTNGHTLTVKVVTSNTVLQKGR------SVSQHLRQTRIAECLVGDETGTILLTARNDQVDLVKPETTIIIRNAKIDMFKGSMRLAV
        RKPVFVKVEQLKPGT GHTLTVKV+ +N V+   R      S+S+  + +RI ECL+GDETG IL TARNDQVDL+KP  T+I+RN++IDMFKG+MRL V
Subjt:  RKPVFVKVEQLKPGTNGHTLTVKVVTSNTVLQKGR------SVSQHLRQTRIAECLVGDETGTILLTARNDQVDLVKPETTIIIRNAKIDMFKGSMRLAV

Query:  DKWGRIELTEPANFVVKEDNNLSLVEYELVNV
        DKWGRIE T  A+F VKEDNNLSLVEYEL+NV
Subjt:  DKWGRIELTEPANFVVKEDNNLSLVEYELVNV

Arabidopsis top hitse value%identityAlignment
AT1G10590.1 Nucleic acid-binding, OB-fold-like protein9.6e-4363.24Show/hide
Query:  AAARPGLRKPVFVKVEQLKPGTNGHTLTVKVVTSNTVLQK--GRSVSQHLRQTRIAECLVGDETGTILLTARNDQVDLVKPETTIIIRNAKIDMFKGSMR
        A A   LRKPVF KV +L+PGTNGH+L VKVV +  V+Q+  GR +    RQ RIAECLVGDETG I+ TARNDQVD++K  + + +RNAKIDM+KGSMR
Subjt:  AAARPGLRKPVFVKVEQLKPGTNGHTLTVKVVTSNTVLQK--GRSVSQHLRQTRIAECLVGDETGTILLTARNDQVDLVKPETTIIIRNAKIDMFKGSMR

Query:  LAVDKWGRIELT-EPANFVVKEDNNLSLVEYELVNV
        LAVD+WGR+E+  EP +  VK+DNNLSL+EYELV+V
Subjt:  LAVDKWGRIELT-EPANFVVKEDNNLSLVEYELVNV

AT1G10590.3 Nucleic acid-binding, OB-fold-like protein9.6e-4363.24Show/hide
Query:  AAARPGLRKPVFVKVEQLKPGTNGHTLTVKVVTSNTVLQK--GRSVSQHLRQTRIAECLVGDETGTILLTARNDQVDLVKPETTIIIRNAKIDMFKGSMR
        A A   LRKPVF KV +L+PGTNGH+L VKVV +  V+Q+  GR +    RQ RIAECLVGDETG I+ TARNDQVD++K  + + +RNAKIDM+KGSMR
Subjt:  AAARPGLRKPVFVKVEQLKPGTNGHTLTVKVVTSNTVLQK--GRSVSQHLRQTRIAECLVGDETGTILLTARNDQVDLVKPETTIIIRNAKIDMFKGSMR

Query:  LAVDKWGRIELT-EPANFVVKEDNNLSLVEYELVNV
        LAVD+WGR+E+  EP +  VK+DNNLSL+EYELV+V
Subjt:  LAVDKWGRIELT-EPANFVVKEDNNLSLVEYELVNV

AT1G23750.1 Nucleic acid-binding, OB-fold-like protein5.8e-4865.67Show/hide
Query:  AARPGLRKPVFVKVEQLKPGTNGHTLTVKVVTSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILLTARNDQVDLVKPETTIIIRNAKIDMFKGSMRLAV
        + + GL+KP F KV+QL+PGT+GH + VK+V++  VLQKGR+     RQ RI+EC+VGDETG I+ TARNDQVDL+K  +T+ +RNAKIDM+KGSMRLAV
Subjt:  AARPGLRKPVFVKVEQLKPGTNGHTLTVKVVTSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILLTARNDQVDLVKPETTIIIRNAKIDMFKGSMRLAV

Query:  DKWGRIELTEPANFVVKEDNNLSLVEYELVNVAE
        DKWGR+E+TEPA+F VKED N+SL+EYELVNV E
Subjt:  DKWGRIELTEPANFVVKEDNNLSLVEYELVNVAE

AT2G33845.1 Nucleic acid-binding, OB-fold-like protein1.4e-4967.31Show/hide
Query:  GKSPTPASPEVQQSN----AAARPGLRKPVFVKVEQLKPGTNGHTLTVKVVTSNTVLQK-GRSVSQHLRQTRIAECLVGDETGTILLTARNDQVDLVKPE
        G++P P S   + S            +KPVFVKV+QLKPGT+GHTLTVKVV  N+V QK G + S HLR  RI+ECLVGDET  IL TARNDQV+L+KP 
Subjt:  GKSPTPASPEVQQSN----AAARPGLRKPVFVKVEQLKPGTNGHTLTVKVVTSNTVLQK-GRSVSQHLRQTRIAECLVGDETGTILLTARNDQVDLVKPE

Query:  TTIIIRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE
         T+ +RNAKIDMFKGSMRLAVDKWGRIE TEPA+  VKEDNNLSLVEYELVNV EE
Subjt:  TTIIIRNAKIDMFKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE

AT4G28440.1 Nucleic acid-binding, OB-fold-like protein3.5e-4568.94Show/hide
Query:  RKPVFVKVEQLKPGTNGHTLTVKVVTSNTVLQKGR------SVSQHLRQTRIAECLVGDETGTILLTARNDQVDLVKPETTIIIRNAKIDMFKGSMRLAV
        RKPVFVKVEQLKPGT GHTLTVKV+ +N V+   R      S+S+  + +RI ECL+GDETG IL TARNDQVDL+KP  T+I+RN++IDMFKG+MRL V
Subjt:  RKPVFVKVEQLKPGTNGHTLTVKVVTSNTVLQKGR------SVSQHLRQTRIAECLVGDETGTILLTARNDQVDLVKPETTIIIRNAKIDMFKGSMRLAV

Query:  DKWGRIELTEPANFVVKEDNNLSLVEYELVNV
        DKWGRIE T  A+F VKEDNNLSLVEYEL+NV
Subjt:  DKWGRIELTEPANFVVKEDNNLSLVEYELVNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACGGGGAAATCACCTACGCCGGCATCGCCGGAGGTGCAGCAGAGCAATGCGGCGGCGCGGCCAGGCCTGAGGAAGCCAGTCTTCGTGAAGGTCGAGCAGCTCAA
ACCTGGCACAAATGGCCATACACTCACCGTCAAGGTTGTTACCTCCAATACCGTGTTGCAGAAGGGTCGATCGGTGTCCCAGCACCTCCGCCAGACTCGGATCGCTGAGT
GCCTTGTTGGGGACGAAACTGGAACCATTTTGCTCACTGCGCGTAATGACCAAGTTGATCTAGTAAAGCCCGAGACAACTATCATTATCCGGAACGCGAAGATTGACATG
TTCAAAGGGTCTATGAGGCTAGCAGTTGATAAATGGGGCCGAATCGAGCTCACTGAGCCTGCAAACTTCGTCGTCAAGGAAGACAACAATCTATCTTTAGTCGAGTATGA
ACTTGTGAATGTTGCAGAGGAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGACGGGGAAATCACCTACGCCGGCATCGCCGGAGGTGCAGCAGAGCAATGCGGCGGCGCGGCCAGGCCTGAGGAAGCCAGTCTTCGTGAAGGTCGAGCAGCTCAA
ACCTGGCACAAATGGCCATACACTCACCGTCAAGGTTGTTACCTCCAATACCGTGTTGCAGAAGGGTCGATCGGTGTCCCAGCACCTCCGCCAGACTCGGATCGCTGAGT
GCCTTGTTGGGGACGAAACTGGAACCATTTTGCTCACTGCGCGTAATGACCAAGTTGATCTAGTAAAGCCCGAGACAACTATCATTATCCGGAACGCGAAGATTGACATG
TTCAAAGGGTCTATGAGGCTAGCAGTTGATAAATGGGGCCGAATCGAGCTCACTGAGCCTGCAAACTTCGTCGTCAAGGAAGACAACAATCTATCTTTAGTCGAGTATGA
ACTTGTGAATGTTGCAGAGGAA
Protein sequenceShow/hide protein sequence
MATGKSPTPASPEVQQSNAAARPGLRKPVFVKVEQLKPGTNGHTLTVKVVTSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILLTARNDQVDLVKPETTIIIRNAKIDM
FKGSMRLAVDKWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE