; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS021278 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS021278
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description30S ribosomal protein S20
Genome locationscaffold358:689583..692009
RNA-Seq ExpressionMS021278
SyntenyMS021278
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domainsIPR002583 - Ribosomal protein S20
IPR036510 - Ribosomal protein S20 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607892.1 30S ribosomal protein S20, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.4e-6985.41Show/hide
Query:  MAAAAITCFSISSKFRNLSLNASSSSFPASSSSSTLKSLTFSSNLSFCAFSNAGCLSMSEAQRPLRYSVVCEAAPKKKVDSAAKRARQAEKRRIYNKARK
        MAAA+ +CF++ SKF NLSLNASSS  P SSSS  LKSL+FSSN+S  AFSN GCLSMS AQRPLRYSVVCEAAP+KK DSAAKRARQAEKRR YNKARK
Subjt:  MAAAAITCFSISSKFRNLSLNASSSSFPASSSSSTLKSLTFSSNLSFCAFSNAGCLSMSEAQRPLRYSVVCEAAPKKKVDSAAKRARQAEKRRIYNKARK

Query:  SEIKTRMKKVLEALDDLKKKPEAQSEEVLSIEKLIAEAYSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYAPASPAAA
        SEI+TRMKK +EALDDLKKKPEAQSEEVL IEKLIAEAYSVIDKAVKVGTLHRNTAA RKSRLARRKKAVEIHHGWY PASPAAA
Subjt:  SEIKTRMKKVLEALDDLKKKPEAQSEEVLSIEKLIAEAYSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYAPASPAAA

XP_022139608.1 30S ribosomal protein S20, chloroplastic [Momordica charantia]1.7e-8399.46Show/hide
Query:  MAAAAITCFSISSKFRNLSLNASSSSFPASSSSSTLKSLTFSSNLSFCAFSNAGCLSMSEAQRPLRYSVVCEAAPKKKVDSAAKRARQAEKRRIYNKARK
        MAAAAITCFSISSKFRNLSLNASSSSFPASSSSSTLKSLTFSSNLSFCAFSN GCLSMSEAQRPLRYSVVCEAAPKKKVDSAAKRARQAEKRRIYNKARK
Subjt:  MAAAAITCFSISSKFRNLSLNASSSSFPASSSSSTLKSLTFSSNLSFCAFSNAGCLSMSEAQRPLRYSVVCEAAPKKKVDSAAKRARQAEKRRIYNKARK

Query:  SEIKTRMKKVLEALDDLKKKPEAQSEEVLSIEKLIAEAYSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYAPASPAAA
        SEIKTRMKKVLEALDDLKKKPEAQSEEVLSIEKLIAEAYSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYAPASPAAA
Subjt:  SEIKTRMKKVLEALDDLKKKPEAQSEEVLSIEKLIAEAYSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYAPASPAAA

XP_022976587.1 30S ribosomal protein S20, chloroplastic-like [Cucurbita maxima]8.0e-7086.41Show/hide
Query:  AAAAITCFSISSKFRNLSLNASSSSFPASSSSSTLKSLTFSSNLSFCAFSNAGCLSMSEAQRPLRYSVVCEAAPKKKVDSAAKRARQAEKRRIYNKARKS
        A A I+CF++ SKFRNLSLNASSSS P S SSSTL+SL+FSSN+S  AFSN GCLS+S+AQRP RYSVVCEAAP KK DSAAKRARQAEKRR+YNKARKS
Subjt:  AAAAITCFSISSKFRNLSLNASSSSFPASSSSSTLKSLTFSSNLSFCAFSNAGCLSMSEAQRPLRYSVVCEAAPKKKVDSAAKRARQAEKRRIYNKARKS

Query:  EIKTRMKKVLEALDDLKKKPEAQSEEVLSIEKLIAEAYSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYAPASPAAA
        EIKTRMKKV+EALDDLKKKPEAQSEEVL IEKLIAEA+SVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWY PASPAAA
Subjt:  EIKTRMKKVLEALDDLKKKPEAQSEEVLSIEKLIAEAYSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYAPASPAAA

XP_023534903.1 30S ribosomal protein S20, chloroplastic-like [Cucurbita pepo subsp. pepo]1.0e-6986.41Show/hide
Query:  AAAAITCFSISSKFRNLSLNASSSSFPASSSSSTLKSLTFSSNLSFCAFSNAGCLSMSEAQRPLRYSVVCEAAPKKKVDSAAKRARQAEKRRIYNKARKS
        A A I+CFS+ SKFRNLSLNASSSS P S SSSTL+SL+FSSN+S  AFSN GCLS+S+AQRP RYSVVCEAAP KK DSAAKRARQAEKRR+YNKARKS
Subjt:  AAAAITCFSISSKFRNLSLNASSSSFPASSSSSTLKSLTFSSNLSFCAFSNAGCLSMSEAQRPLRYSVVCEAAPKKKVDSAAKRARQAEKRRIYNKARKS

Query:  EIKTRMKKVLEALDDLKKKPEAQSEEVLSIEKLIAEAYSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYAPASPAAA
        EIKTRMKKV+EALDDLKKKPE QSEEVL IEKLIAEA+SVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWY PASPAAA
Subjt:  EIKTRMKKVLEALDDLKKKPEAQSEEVLSIEKLIAEAYSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYAPASPAAA

XP_038899721.1 30S ribosomal protein S20, chloroplastic [Benincasa hispida]2.3e-6985.41Show/hide
Query:  MAAAAITCFSISSKFRNLSLNASSSSFPASSSSSTLKSLTFSSNLSFCAFSNAGCLSMSEAQRPLRYSVVCEAAPKKKVDSAAKRARQAEKRRIYNKARK
        MAA A++CFS+ SKFRNLSLNASSS  PAS SS TL+SL+FSSN S  AFSN GCL+MS+AQRP RYSVVCEAAPK K DSAAKR RQAEKRRIYNKARK
Subjt:  MAAAAITCFSISSKFRNLSLNASSSSFPASSSSSTLKSLTFSSNLSFCAFSNAGCLSMSEAQRPLRYSVVCEAAPKKKVDSAAKRARQAEKRRIYNKARK

Query:  SEIKTRMKKVLEALDDLKKKPEAQSEEVLSIEKLIAEAYSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYAPASPAAA
        SEIKTR+KKVLEALD LKKKPEAQSEEVL IEKLIAEAYSVIDKAV+VGTLHRNTAARRKSRLARRKKAVEIHHGWY P SPAAA
Subjt:  SEIKTRMKKVLEALDDLKKKPEAQSEEVLSIEKLIAEAYSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYAPASPAAA

TrEMBL top hitse value%identityAlignment
A0A6J1CG14 30S ribosomal protein S20, chloroplastic8.0e-8499.46Show/hide
Query:  MAAAAITCFSISSKFRNLSLNASSSSFPASSSSSTLKSLTFSSNLSFCAFSNAGCLSMSEAQRPLRYSVVCEAAPKKKVDSAAKRARQAEKRRIYNKARK
        MAAAAITCFSISSKFRNLSLNASSSSFPASSSSSTLKSLTFSSNLSFCAFSN GCLSMSEAQRPLRYSVVCEAAPKKKVDSAAKRARQAEKRRIYNKARK
Subjt:  MAAAAITCFSISSKFRNLSLNASSSSFPASSSSSTLKSLTFSSNLSFCAFSNAGCLSMSEAQRPLRYSVVCEAAPKKKVDSAAKRARQAEKRRIYNKARK

Query:  SEIKTRMKKVLEALDDLKKKPEAQSEEVLSIEKLIAEAYSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYAPASPAAA
        SEIKTRMKKVLEALDDLKKKPEAQSEEVLSIEKLIAEAYSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYAPASPAAA
Subjt:  SEIKTRMKKVLEALDDLKKKPEAQSEEVLSIEKLIAEAYSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYAPASPAAA

A0A6J1F6F1 30S ribosomal protein S20, chloroplastic-like5.6e-6985.87Show/hide
Query:  AAAAITCFSISSKFRNLSLNASSSSFPASSSSSTLKSLTFSSNLSFCAFSNAGCLSMSEAQRPLRYSVVCEAAPKKKVDSAAKRARQAEKRRIYNKARKS
        A A I+CF++ SKFRNLSLNASSSS   S SSSTL+SL+FSSN+S  AFSN GCLS+S+AQRP RYSVVCEAAP KK DSAAKRARQAEKRR+YNKARKS
Subjt:  AAAAITCFSISSKFRNLSLNASSSSFPASSSSSTLKSLTFSSNLSFCAFSNAGCLSMSEAQRPLRYSVVCEAAPKKKVDSAAKRARQAEKRRIYNKARKS

Query:  EIKTRMKKVLEALDDLKKKPEAQSEEVLSIEKLIAEAYSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYAPASPAAA
        EIKTRMKKV+EALDDLKKKPEAQSEEVL IEKLIAEA+SVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWY PASPAAA
Subjt:  EIKTRMKKVLEALDDLKKKPEAQSEEVLSIEKLIAEAYSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYAPASPAAA

A0A6J1FKZ1 30S ribosomal protein S20, chloroplastic2.5e-6984.86Show/hide
Query:  MAAAAITCFSISSKFRNLSLNASSSSFPASSSSSTLKSLTFSSNLSFCAFSNAGCLSMSEAQRPLRYSVVCEAAPKKKVDSAAKRARQAEKRRIYNKARK
        MAAA+ +CF++ SKF NLSLNAS S  P SSSS  LKSL+FSSN+S  AFSN GCLSMS AQRPLRYSVVCEAAP+KK DSAAKRARQAEKRR YNKARK
Subjt:  MAAAAITCFSISSKFRNLSLNASSSSFPASSSSSTLKSLTFSSNLSFCAFSNAGCLSMSEAQRPLRYSVVCEAAPKKKVDSAAKRARQAEKRRIYNKARK

Query:  SEIKTRMKKVLEALDDLKKKPEAQSEEVLSIEKLIAEAYSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYAPASPAAA
        SEI+TRMKK +EALDDLKKKPEAQSEEVL IEKLIAEAYSVIDKAVKVGTLHRNTAA RKSRLARRKKAVEIHHGWY PASPAAA
Subjt:  SEIKTRMKKVLEALDDLKKKPEAQSEEVLSIEKLIAEAYSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYAPASPAAA

A0A6J1IG57 30S ribosomal protein S20, chloroplastic-like3.9e-7086.41Show/hide
Query:  AAAAITCFSISSKFRNLSLNASSSSFPASSSSSTLKSLTFSSNLSFCAFSNAGCLSMSEAQRPLRYSVVCEAAPKKKVDSAAKRARQAEKRRIYNKARKS
        A A I+CF++ SKFRNLSLNASSSS P S SSSTL+SL+FSSN+S  AFSN GCLS+S+AQRP RYSVVCEAAP KK DSAAKRARQAEKRR+YNKARKS
Subjt:  AAAAITCFSISSKFRNLSLNASSSSFPASSSSSTLKSLTFSSNLSFCAFSNAGCLSMSEAQRPLRYSVVCEAAPKKKVDSAAKRARQAEKRRIYNKARKS

Query:  EIKTRMKKVLEALDDLKKKPEAQSEEVLSIEKLIAEAYSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYAPASPAAA
        EIKTRMKKV+EALDDLKKKPEAQSEEVL IEKLIAEA+SVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWY PASPAAA
Subjt:  EIKTRMKKVLEALDDLKKKPEAQSEEVLSIEKLIAEAYSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYAPASPAAA

A0A6J1IVC5 30S ribosomal protein S20, chloroplastic-like9.5e-6983.78Show/hide
Query:  MAAAAITCFSISSKFRNLSLNASSSSFPASSSSSTLKSLTFSSNLSFCAFSNAGCLSMSEAQRPLRYSVVCEAAPKKKVDSAAKRARQAEKRRIYNKARK
        MAAA+ +CF++ SKF NLSLNASSS  P SSSS  L+SL+FSSN+S  AFS+ GCLSMS AQRPLRYSVVCEAAP+KK DSAAKRARQAEKRR YNKARK
Subjt:  MAAAAITCFSISSKFRNLSLNASSSSFPASSSSSTLKSLTFSSNLSFCAFSNAGCLSMSEAQRPLRYSVVCEAAPKKKVDSAAKRARQAEKRRIYNKARK

Query:  SEIKTRMKKVLEALDDLKKKPEAQSEEVLSIEKLIAEAYSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYAPASPAAA
        SEI+TRMKK +EALDDLKKKPEAQSEEVL +EKLIAEAYSVIDKAVKVGTLHRNTAA RKSRLARRKKAVEIHHGWY PASPAAA
Subjt:  SEIKTRMKKVLEALDDLKKKPEAQSEEVLSIEKLIAEAYSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYAPASPAAA

SwissProt top hitse value%identityAlignment
B0C2C8 30S ribosomal protein S205.7e-1048.35Show/hide
Query:  VDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDDLKKKPEAQSEEVLSIEKLIAEAYSVIDKAVKVGTLHRNTAARRKSRLARRKKA
        + SA KR   AE+ R+ NKA KS IKT  K+   A+DD K  P    +++ +I+  ++  YS IDKAVKVG  HRNT AR+K+ LAR  KA
Subjt:  VDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDDLKKKPEAQSEEVLSIEKLIAEAYSVIDKAVKVGTLHRNTAARRKSRLARRKKA

B1XHW6 30S ribosomal protein S202.1e-0944.44Show/hide
Query:  VDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDDLKKKPEAQSEEVLSIEKLIAEAYSVIDKAVKVGTLHRNTAARRKSRLARRKK
        + SA KR + AE+ R+ NK+ KS +KT  KK L+A++     P A ++     +K ++  YS IDKAVK G  H NTAAR+K+RLA+  K
Subjt:  VDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDDLKKKPEAQSEEVLSIEKLIAEAYSVIDKAVKVGTLHRNTAARRKSRLARRKK

B7KG02 30S ribosomal protein S209.6e-1044.57Show/hide
Query:  VDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDDLKKKPEAQSEEVLSIEKLIAEAYSVIDKAVKVGTLHRNTAARRKSRLARRKKAV
        + SA KR + AE+ R+ NK+ KS +KT MKK   A++D K  P  ++++  ++++ ++ AYS IDKAVK   LHRN  AR+KS+LA   K V
Subjt:  VDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDDLKKKPEAQSEEVLSIEKLIAEAYSVIDKAVKVGTLHRNTAARRKSRLARRKKAV

P82130 30S ribosomal protein S20, chloroplastic2.1e-4465Show/hide
Query:  MAAAAITCFSISSKFRNLSLNASSSSFPASSSSSTLKSLTFSSNLSFCAFSNAGCLSMSEAQRPLRYSVVCEAAPKKKVDSAAKRARQAEKRRIYNKARK
        MA  +  C SISSK  NLS   SS+ FP    +S+LK LTFS+NLS   FS  GC S+   QR   +SVVCE A  KK DSAAKR RQAE RR+ NKARK
Subjt:  MAAAAITCFSISSKFRNLSLNASSSSFPASSSSSTLKSLTFSSNLSFCAFSNAGCLSMSEAQRPLRYSVVCEAAPKKKVDSAAKRARQAEKRRIYNKARK

Query:  SEIKTRMKKVLEALDDLKKKPEAQSEEVLSIEKLIAEAYSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYAPA
        SE+KTRM+KV EALD LKKK  A +EE++ I+ LIAEAYS IDKAV  GTLHRNTAARRKSRLAR KK VEIHHGWY P+
Subjt:  SEIKTRMKKVLEALDDLKKKPEAQSEEVLSIEKLIAEAYSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYAPA

Q9ASV6 30S ribosomal protein S20, chloroplastic7.1e-4560.96Show/hide
Query:  TCFSISSKFRNLSLNASSSSFPASS------SSSTL-KSLTFSSNLSFCAFSNAGCLSMSEAQRPLRYSVVCE-AAPKKKVDSAAKRARQAEKRRIYNKA
        +C ++ S+F+ LSL   S S P+SS      +S+TL  SL+FS ++S C   + G L +   Q+P+R  +VCE AAP KK DSAAKRARQAEKRR+YNK+
Subjt:  TCFSISSKFRNLSLNASSSSFPASS------SSSTL-KSLTFSSNLSFCAFSNAGCLSMSEAQRPLRYSVVCE-AAPKKKVDSAAKRARQAEKRRIYNKA

Query:  RKSEIKTRMKKVLEALDDLKKKPEAQSEEVLSIEKLIAEAYSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYAPASPAAA
        +KSE +TRMKKVLEAL+ LKKK +AQ++E++++EKLI EAYS IDKAVKV  LH+NT ARRKSRLARRKKAVEIHHGWY P + AAA
Subjt:  RKSEIKTRMKKVLEALDDLKKKPEAQSEEVLSIEKLIAEAYSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYAPASPAAA

Arabidopsis top hitse value%identityAlignment
AT3G15190.1 chloroplast 30S ribosomal protein S20, putative5.0e-4660.96Show/hide
Query:  TCFSISSKFRNLSLNASSSSFPASS------SSSTL-KSLTFSSNLSFCAFSNAGCLSMSEAQRPLRYSVVCE-AAPKKKVDSAAKRARQAEKRRIYNKA
        +C ++ S+F+ LSL   S S P+SS      +S+TL  SL+FS ++S C   + G L +   Q+P+R  +VCE AAP KK DSAAKRARQAEKRR+YNK+
Subjt:  TCFSISSKFRNLSLNASSSSFPASS------SSSTL-KSLTFSSNLSFCAFSNAGCLSMSEAQRPLRYSVVCE-AAPKKKVDSAAKRARQAEKRRIYNKA

Query:  RKSEIKTRMKKVLEALDDLKKKPEAQSEEVLSIEKLIAEAYSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYAPASPAAA
        +KSE +TRMKKVLEAL+ LKKK +AQ++E++++EKLI EAYS IDKAVKV  LH+NT ARRKSRLARRKKAVEIHHGWY P + AAA
Subjt:  RKSEIKTRMKKVLEALDDLKKKPEAQSEEVLSIEKLIAEAYSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYAPASPAAA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGCAGCTGCAATTACTTGCTTCTCTATCTCTTCTAAATTCAGAAATCTTTCTCTCAATGCTTCTTCCTCCTCTTTCCCCGCTTCCTCTTCCTCTTCAACCCTCAA
ATCTCTCACTTTCTCCTCCAATCTTTCATTCTGTGCCTTTTCCAATGCAGGGTGTCTGTCGATGAGTGAAGCTCAGAGGCCACTTCGTTACTCTGTTGTGTGCGAGGCGG
CTCCTAAGAAAAAGGTTGATTCTGCTGCAAAGAGGGCTCGCCAGGCTGAGAAAAGGCGTATTTACAACAAAGCCCGGAAGTCTGAAATCAAAACCAGGATGAAGAAGGTT
TTGGAAGCTCTAGATGATCTCAAGAAGAAACCTGAAGCACAGTCAGAGGAAGTCCTTTCAATTGAGAAGCTCATTGCAGAGGCATACTCAGTGATCGACAAAGCCGTGAA
AGTGGGAACATTGCACAGAAACACTGCTGCACGTCGGAAATCTCGACTTGCCAGAAGAAAGAAAGCCGTAGAAATCCACCATGGCTGGTACGCCCCTGCTTCACCTGCAG
CTGCC
mRNA sequenceShow/hide mRNA sequence
ATGGCGGCAGCTGCAATTACTTGCTTCTCTATCTCTTCTAAATTCAGAAATCTTTCTCTCAATGCTTCTTCCTCCTCTTTCCCCGCTTCCTCTTCCTCTTCAACCCTCAA
ATCTCTCACTTTCTCCTCCAATCTTTCATTCTGTGCCTTTTCCAATGCAGGGTGTCTGTCGATGAGTGAAGCTCAGAGGCCACTTCGTTACTCTGTTGTGTGCGAGGCGG
CTCCTAAGAAAAAGGTTGATTCTGCTGCAAAGAGGGCTCGCCAGGCTGAGAAAAGGCGTATTTACAACAAAGCCCGGAAGTCTGAAATCAAAACCAGGATGAAGAAGGTT
TTGGAAGCTCTAGATGATCTCAAGAAGAAACCTGAAGCACAGTCAGAGGAAGTCCTTTCAATTGAGAAGCTCATTGCAGAGGCATACTCAGTGATCGACAAAGCCGTGAA
AGTGGGAACATTGCACAGAAACACTGCTGCACGTCGGAAATCTCGACTTGCCAGAAGAAAGAAAGCCGTAGAAATCCACCATGGCTGGTACGCCCCTGCTTCACCTGCAG
CTGCC
Protein sequenceShow/hide protein sequence
MAAAAITCFSISSKFRNLSLNASSSSFPASSSSSTLKSLTFSSNLSFCAFSNAGCLSMSEAQRPLRYSVVCEAAPKKKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKV
LEALDDLKKKPEAQSEEVLSIEKLIAEAYSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYAPASPAAA