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MS021301 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS021301
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold358:889828..889965
RNA-Seq ExpressionMS021301
SyntenyMS021301
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046851.1 uncharacterized protein E6C27_scaffold19358G00020 [Cucumis melo var. makuwa]4.4e-0965.22Show/hide
Query:  KHYFIAWLVICNRLYRRDRLYEWVSSIPISCVLCTNGAKSRDHLFF
        KH F AWL I +RL  RDRL+ W SSIP+SC+LC  G +SRDHLFF
Subjt:  KHYFIAWLVICNRLYRRDRLYEWVSSIPISCVLCTNGAKSRDHLFF

KAA0057642.1 reverse transcriptase [Cucumis melo var. makuwa]2.2e-0860.87Show/hide
Query:  KHYFIAWLVICNRLYRRDRLYEWVSSIPISCVLCTNGAKSRDHLFF
        KH F AWL I +RL  RDR + W SS+P+SC+LC  G +SRDHLFF
Subjt:  KHYFIAWLVICNRLYRRDRLYEWVSSIPISCVLCTNGAKSRDHLFF

TYK12108.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]4.8e-0860.87Show/hide
Query:  KHYFIAWLVICNRLYRRDRLYEWVSSIPISCVLCTNGAKSRDHLFF
        KH F AWL I +RL  RDRL+ W SS+P+ C+LC  G +SRDHLFF
Subjt:  KHYFIAWLVICNRLYRRDRLYEWVSSIPISCVLCTNGAKSRDHLFF

TYK19523.1 reverse transcriptase [Cucumis melo var. makuwa]2.2e-0860.87Show/hide
Query:  KHYFIAWLVICNRLYRRDRLYEWVSSIPISCVLCTNGAKSRDHLFF
        KH F AWL I +RL  RDR + W SS+P+SC+LC  G +SRDHLFF
Subjt:  KHYFIAWLVICNRLYRRDRLYEWVSSIPISCVLCTNGAKSRDHLFF

XP_008452126.1 PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo]2.2e-0860.87Show/hide
Query:  KHYFIAWLVICNRLYRRDRLYEWVSSIPISCVLCTNGAKSRDHLFF
        KH F AWL I +RL  RDR + W SS+P+SC+LC  G +SRDHLFF
Subjt:  KHYFIAWLVICNRLYRRDRLYEWVSSIPISCVLCTNGAKSRDHLFF

TrEMBL top hitse value%identityAlignment
A0A1S3BSI8 uncharacterized protein LOC1034932251.0e-0860.87Show/hide
Query:  KHYFIAWLVICNRLYRRDRLYEWVSSIPISCVLCTNGAKSRDHLFF
        KH F AWL I +RL  RDR + W SS+P+SC+LC  G +SRDHLFF
Subjt:  KHYFIAWLVICNRLYRRDRLYEWVSSIPISCVLCTNGAKSRDHLFF

A0A5A7TZS0 Reverse transcriptase domain-containing protein2.1e-0965.22Show/hide
Query:  KHYFIAWLVICNRLYRRDRLYEWVSSIPISCVLCTNGAKSRDHLFF
        KH F AWL I +RL  RDRL+ W SSIP+SC+LC  G +SRDHLFF
Subjt:  KHYFIAWLVICNRLYRRDRLYEWVSSIPISCVLCTNGAKSRDHLFF

A0A5A7UP65 Reverse transcriptase1.0e-0860.87Show/hide
Query:  KHYFIAWLVICNRLYRRDRLYEWVSSIPISCVLCTNGAKSRDHLFF
        KH F AWL I +RL  RDR + W SS+P+SC+LC  G +SRDHLFF
Subjt:  KHYFIAWLVICNRLYRRDRLYEWVSSIPISCVLCTNGAKSRDHLFF

A0A5D3CLU1 Non-LTR retroelement reverse transcriptase-like protein2.3e-0860.87Show/hide
Query:  KHYFIAWLVICNRLYRRDRLYEWVSSIPISCVLCTNGAKSRDHLFF
        KH F AWL I +RL  RDRL+ W SS+P+ C+LC  G +SRDHLFF
Subjt:  KHYFIAWLVICNRLYRRDRLYEWVSSIPISCVLCTNGAKSRDHLFF

A0A5D3D7P6 Reverse transcriptase1.0e-0860.87Show/hide
Query:  KHYFIAWLVICNRLYRRDRLYEWVSSIPISCVLCTNGAKSRDHLFF
        KH F AWL I +RL  RDR + W SS+P+SC+LC  G +SRDHLFF
Subjt:  KHYFIAWLVICNRLYRRDRLYEWVSSIPISCVLCTNGAKSRDHLFF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43730.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein9.3e-1056.52Show/hide
Query:  KHYFIAWLVICNRLYRRDRLYEWVSSIPISCVLCTNGAKSRDHLFF
        KH FI W+V  NRL+ RDRL  W  SIP  C+LC +  +SR HLFF
Subjt:  KHYFIAWLVICNRLYRRDRLYEWVSSIPISCVLCTNGAKSRDHLFF

AT2G02520.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein2.2e-0641.3Show/hide
Query:  KHYFIAWLVICNRLYRRDRLYEWVSSIPISCVLCTNGAKSRDHLFF
        KH FIAW+ + +RL+ +DR+  W    P  C+ C    ++R HLFF
Subjt:  KHYFIAWLVICNRLYRRDRLYEWVSSIPISCVLCTNGAKSRDHLFF

AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein7.4e-0745.65Show/hide
Query:  KHYFIAWLVICNRLYRRDRLYEWVSSIPISCVLCTNGAKSRDHLFF
        K+  +AW+ I NRL   DR+  W +    SCVLC +  ++RDHLFF
Subjt:  KHYFIAWLVICNRLYRRDRLYEWVSSIPISCVLCTNGAKSRDHLFF

AT4G04650.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.6e-0956.52Show/hide
Query:  KHYFIAWLVICNRLYRRDRLYEWVSSIPISCVLCTNGAKSRDHLFF
        KH FI W+V  NRL+ RDRL  W  SIP  C+LC     SR HLFF
Subjt:  KHYFIAWLVICNRLYRRDRLYEWVSSIPISCVLCTNGAKSRDHLFF

AT5G18880.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein2.8e-0650Show/hide
Query:  IAWLVICNRLYRRDRLYEWVSSIPISCVLCTNGAKSRDHLFF
        I W+    RL  RDRL  W  +IP S VLC+NG ++  HLFF
Subjt:  IAWLVICNRLYRRDRLYEWVSSIPISCVLCTNGAKSRDHLFF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAACACTATTTTATTGCTTGGTTGGTGATTTGTAATCGTCTCTATAGGAGGGACCGATTGTATGAGTGGGTTTCCTCAATACCTATCTCGTGTGTTTTGTGTACGAATGG
GGCAAAGTCTCGTGATCACTTGTTTTTT
mRNA sequenceShow/hide mRNA sequence
AAACACTATTTTATTGCTTGGTTGGTGATTTGTAATCGTCTCTATAGGAGGGACCGATTGTATGAGTGGGTTTCCTCAATACCTATCTCGTGTGTTTTGTGTACGAATGG
GGCAAAGTCTCGTGATCACTTGTTTTTT
Protein sequenceShow/hide protein sequence
KHYFIAWLVICNRLYRRDRLYEWVSSIPISCVLCTNGAKSRDHLFF