CuGenDBv2

Gene ID	MS021303
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	50S ribosomal protein L2, chloroplastic
Genome location	scaffold358:893543..893647
RNA-Seq Expression	MS021303
Synteny	MS021303
Gene Ontology terms	GO:0002181 - cytoplasmic translation (biological process) GO:0009507 - chloroplast (cellular component) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0016740 - transferase activity (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

AES61058.1 50S ribosomal protein L2 [Medicago truncatula]

2.5e-04

74.29

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Query:  RRYILPPRWTIIGDTIDYGTEVYIQMGNVLPLNAV
        +RYIL PR  IIGDTI YGTEV I+MGN LPL+AV
Subjt:  RRYILPPRWTIIGDTIDYGTEVYIQMGNVLPLNAV

AES88105.1 ribosomal protein L23.1 [Medicago truncatula]

2.5e-04

74.29

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Query:  RRYILPPRWTIIGDTIDYGTEVYIQMGNVLPLNAV
        +RYIL PR  IIGDTI YGTEV I+MGN LPL+AV
Subjt:  RRYILPPRWTIIGDTIDYGTEVYIQMGNVLPLNAV

QIB71944.1 50S ribosomal protein L2 [Fagonia indica]

2.5e-04

74.29

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Query:  RRYILPPRWTIIGDTIDYGTEVYIQMGNVLPLNAV
        +RYIL PR  IIGDTI YGTEV I+MGN LPL+AV
Subjt:  RRYILPPRWTIIGDTIDYGTEVYIQMGNVLPLNAV

RHN59749.1 putative ribosomal protein L2 [Medicago truncatula]

2.5e-04

74.29

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Query:  RRYILPPRWTIIGDTIDYGTEVYIQMGNVLPLNAV
        +RYIL PR  IIGDTI YGTEV I+MGN LPL+AV
Subjt:  RRYILPPRWTIIGDTIDYGTEVYIQMGNVLPLNAV

RHN66724.1 50S ribosomal protein L2 [Medicago truncatula]

2.5e-04

74.29

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Query:  RRYILPPRWTIIGDTIDYGTEVYIQMGNVLPLNAV
        +RYIL PR  IIGDTI YGTEV I+MGN LPL+AV
Subjt:  RRYILPPRWTIIGDTIDYGTEVYIQMGNVLPLNAV

TrEMBL top hits

e value

%identity

Alignment

A0A2Z4KH11 Ribosomal protein L2

1.2e-04

74.29

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Query:  RRYILPPRWTIIGDTIDYGTEVYIQMGNVLPLNAV
        +RYIL PR  IIGDTI YGTEV I+MGN LPL+AV
Subjt:  RRYILPPRWTIIGDTIDYGTEVYIQMGNVLPLNAV

A0A396IQT2 50S ribosomal protein L2

1.2e-04

74.29

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Query:  RRYILPPRWTIIGDTIDYGTEVYIQMGNVLPLNAV
        +RYIL PR  IIGDTI YGTEV I+MGN LPL+AV
Subjt:  RRYILPPRWTIIGDTIDYGTEVYIQMGNVLPLNAV

G7I4S1 50S ribosomal protein L2

1.2e-04

74.29

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Query:  RRYILPPRWTIIGDTIDYGTEVYIQMGNVLPLNAV
        +RYIL PR  IIGDTI YGTEV I+MGN LPL+AV
Subjt:  RRYILPPRWTIIGDTIDYGTEVYIQMGNVLPLNAV

G7J105 50S ribosomal protein L2

1.2e-04

74.29

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Query:  RRYILPPRWTIIGDTIDYGTEVYIQMGNVLPLNAV
        +RYIL PR  IIGDTI YGTEV I+MGN LPL+AV
Subjt:  RRYILPPRWTIIGDTIDYGTEVYIQMGNVLPLNAV

G7JDH3 Ribosomal protein L23.1

1.2e-04

74.29

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Query:  RRYILPPRWTIIGDTIDYGTEVYIQMGNVLPLNAV
        +RYIL PR  IIGDTI YGTEV I+MGN LPL+AV
Subjt:  RRYILPPRWTIIGDTIDYGTEVYIQMGNVLPLNAV

SwissProt top hits

e value

%identity

Alignment

A0A398 50S ribosomal protein L2-B, chloroplastic

1.4e-05

67.65

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Query:  RRYILPPRWTIIGDTIDYGTEVYIQMGNVLPLNA
        +RYIL PR  +IGDTI  GTEV I+MGN LPL+A
Subjt:  RRYILPPRWTIIGDTIDYGTEVYIQMGNVLPLNA

A6MMG4 50S ribosomal protein L2-A, chloroplastic

1.0e-05

70.59

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Query:  RRYILPPRWTIIGDTIDYGTEVYIQMGNVLPLNA
        +RYIL PR  IIGDTI  GTEV I MGN LPL+A
Subjt:  RRYILPPRWTIIGDTIDYGTEVYIQMGNVLPLNA

Q0G9F5 50S ribosomal protein L2-A, chloroplastic

3.9e-05

69.7

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Query:  RRYILPPRWTIIGDTIDYGTEVYIQMGNVLPLN
        +RYIL PR  IIGDTI  GTEV I MGN LPL+
Subjt:  RRYILPPRWTIIGDTIDYGTEVYIQMGNVLPLN

Q14F95 50S ribosomal protein L2-A, chloroplastic

3.0e-05

69.7

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Query:  RRYILPPRWTIIGDTIDYGTEVYIQMGNVLPLN
        +RYIL PR  IIGDTI  GTEV I+MGN LPL+
Subjt:  RRYILPPRWTIIGDTIDYGTEVYIQMGNVLPLN

Q8S8V3 50S ribosomal protein L2-A, chloroplastic

3.9e-05

71.88

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Query:  RRYILPPRWTIIGDTIDYGTEVYIQMGNVLPL
        +RYIL PR  IIGDTI  GTEV I+MGN LPL
Subjt:  RRYILPPRWTIIGDTIDYGTEVYIQMGNVLPL

Arabidopsis top hits

e value

%identity

Alignment

ATCG00830.1 ribosomal protein L2

2.8e-06

71.88

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Query:  RRYILPPRWTIIGDTIDYGTEVYIQMGNVLPL
        +RYIL PR  IIGDTI  GTEV I+MGN LPL
Subjt:  RRYILPPRWTIIGDTIDYGTEVYIQMGNVLPL

ATCG01310.1 ribosomal protein L2

2.8e-06

71.88

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Query:  RRYILPPRWTIIGDTIDYGTEVYIQMGNVLPL
        +RYIL PR  IIGDTI  GTEV I+MGN LPL
Subjt:  RRYILPPRWTIIGDTIDYGTEVYIQMGNVLPL

Sequences

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CDS sequence

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AGAAGATATATTTTACCTCCCAGATGGACCATAATTGGAGATACCATTGATTATGGTACAGAAGTTTATATACAAATGGGAAATGTCCTACCTTTGAATGCGGTT

mRNA sequence

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AGAAGATATATTTTACCTCCCAGATGGACCATAATTGGAGATACCATTGATTATGGTACAGAAGTTTATATACAAATGGGAAATGTCCTACCTTTGAATGCGGTT

Protein sequence

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RRYILPPRWTIIGDTIDYGTEVYIQMGNVLPLNAV

MS021303 (gene) of Bitter gourd (TR) v1 genome