; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS021306 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS021306
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptiontranslation initiation factor IF-1, chloroplastic-like
Genome locationscaffold358:914009..914458
RNA-Seq ExpressionMS021306
SyntenyMS021306
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0043022 - ribosome binding (molecular function)
InterPro domainsIPR004368 - Translation initiation factor IF-1
IPR006196 - RNA-binding domain, S1, IF1 type
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064332.1 translation initiation factor IF-1 [Cucumis melo var. makuwa]1.3e-5479.33Show/hide
Query:  MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHLSVVSIPFPTSTFLHSPYHASPRLSVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNED
        M++TN LQFPLL  +H RPP      STLLFP ++SHLSVVSI FPTS FLH+P HA P  ++MAKSPK+D+SEQK SHEGSV ESLPNGMFRVRLDNED
Subjt:  MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHLSVVSIPFPTSTFLHSPYHASPRLSVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNED

Query:  LILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDSSS
        LILGYISGKIRKNFVRILPGDRVR+EVSRYDSTKGRIVYRLRSS KDSSS
Subjt:  LILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDSSS

KAG6607876.1 Translation initiation factor IF-1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]9.7e-5076Show/hide
Query:  MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHLSVVSIPFPTSTFLHSPYHASPRLSVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNED
        M++TN LQFPLL     RPP      ST LFP+++SHLSVVSIPFP+S FLH+P H S     MAKSPKS+SSEQK+SHEGSV ESLPNGMFRV+LDNED
Subjt:  MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHLSVVSIPFPTSTFLHSPYHASPRLSVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNED

Query:  LILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDSSS
        LILGYISGKIRKNFVRILPGDRVR+EVSRYDSTKGRIVYR R STKD SS
Subjt:  LILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDSSS

XP_011654076.1 uncharacterized protein LOC101206284 [Cucumis sativus]9.4e-5377.33Show/hide
Query:  MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHLSVVSIPFPTSTFLHSPYHASPRLSVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNED
        M++TN LQFPLL  +H RPP      STLLFP+++SHLS+ SI FPTS FLH+P HASP   +MAKSPK+D+SEQK SHEGSV ESLPNGMFRVRLDN+D
Subjt:  MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHLSVVSIPFPTSTFLHSPYHASPRLSVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNED

Query:  LILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDSSS
        LILGYISGKIRKNFVRILPGDRVR+EVSRYDSTKGRIVYR+R STKDSSS
Subjt:  LILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDSSS

XP_022139601.1 uncharacterized protein LOC111010461 [Momordica charantia]1.8e-7298Show/hide
Query:  MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHLSVVSIPFPTSTFLHSPYHASPRLSVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNED
        MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSH SVVSIPFPTSTFLH PYHASPRL VMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNED
Subjt:  MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHLSVVSIPFPTSTFLHSPYHASPRLSVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNED

Query:  LILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDSSS
        LILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDSSS
Subjt:  LILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDSSS

XP_038899010.1 translation initiation factor IF-1, chloroplastic [Benincasa hispida]1.3e-5478.67Show/hide
Query:  MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHLSVVSIPFPTSTFLHSPYHASPRLSVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNED
        M++T  LQFPLL  +H RPP      STL FP+++SHLSVVSI FPT+ FLH+P HAS    +MAKSPK+D+SEQKWSHEGSV ESLPNGMFRVRLDNED
Subjt:  MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHLSVVSIPFPTSTFLHSPYHASPRLSVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNED

Query:  LILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDSSS
        LILGYISGKIRKNFVRILPGDRVR+EVSRYDSTKGRIVYRLRSSTKDSSS
Subjt:  LILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDSSS

TrEMBL top hitse value%identityAlignment
A0A0A0L4Q7 S1-like domain-containing protein4.5e-5377.33Show/hide
Query:  MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHLSVVSIPFPTSTFLHSPYHASPRLSVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNED
        M++TN LQFPLL  +H RPP      STLLFP+++SHLS+ SI FPTS FLH+P HASP   +MAKSPK+D+SEQK SHEGSV ESLPNGMFRVRLDN+D
Subjt:  MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHLSVVSIPFPTSTFLHSPYHASPRLSVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNED

Query:  LILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDSSS
        LILGYISGKIRKNFVRILPGDRVR+EVSRYDSTKGRIVYR+R STKDSSS
Subjt:  LILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDSSS

A0A5A7V7J3 Translation initiation factor IF-16.3e-5579.33Show/hide
Query:  MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHLSVVSIPFPTSTFLHSPYHASPRLSVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNED
        M++TN LQFPLL  +H RPP      STLLFP ++SHLSVVSI FPTS FLH+P HA P  ++MAKSPK+D+SEQK SHEGSV ESLPNGMFRVRLDNED
Subjt:  MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHLSVVSIPFPTSTFLHSPYHASPRLSVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNED

Query:  LILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDSSS
        LILGYISGKIRKNFVRILPGDRVR+EVSRYDSTKGRIVYRLRSS KDSSS
Subjt:  LILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDSSS

A0A6J1CD60 uncharacterized protein LOC1110104618.8e-7398Show/hide
Query:  MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHLSVVSIPFPTSTFLHSPYHASPRLSVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNED
        MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSH SVVSIPFPTSTFLH PYHASPRL VMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNED
Subjt:  MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHLSVVSIPFPTSTFLHSPYHASPRLSVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNED

Query:  LILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDSSS
        LILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDSSS
Subjt:  LILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDSSS

A0A6J1FLU6 translation initiation factor IF-1, chloroplastic-like5.2e-4974.67Show/hide
Query:  MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHLSVVSIPFPTSTFLHSPYHASPRLSVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNED
        M++TN LQFPLL     RPP      ST LFP+++SH+SVVSIPFP+S FLH+P H       MAKSPKS+SSEQK+SHEGSV ESLPNGMFRV+LDNED
Subjt:  MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHLSVVSIPFPTSTFLHSPYHASPRLSVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNED

Query:  LILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDSSS
        LILGYISGKIRKNFVRILPGDRVR+EVSRYDSTKGRIVYR R STKD SS
Subjt:  LILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDSSS

A0A6J1IP00 uncharacterized protein LOC1114769478.0e-5074.48Show/hide
Query:  MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHLSVVSIPFPTSTFLHSPYHASPRLSVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNED
        M++TN L+FPLL   H RPP      STL FP+++SHLSVVSI FPTS FL +P H   R ++MAK PKSDS+EQKWS+EGS+ ESLPNGMFRVRLDNED
Subjt:  MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHLSVVSIPFPTSTFLHSPYHASPRLSVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNED

Query:  LILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSST
        LILGYI GKIRKNFVRILPGDRVR+EVSRYDSTKGRIVYR RSST
Subjt:  LILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSST

SwissProt top hitse value%identityAlignment
A0A370 Translation initiation factor IF-1, chloroplastic5.2e-3082.67Show/hide
Query:  EQKWSHEGSVTESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDS
        EQKW+HEG +TESLPNGMFRVRLDNEDLILGY+SGKIR++F+RILPGDRV+IEVSRYDST+GRI+YRLR+  KDS
Subjt:  EQKWSHEGSVTESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDS

Q09G11 Translation initiation factor IF-1, chloroplastic4.0e-3082.89Show/hide
Query:  EQKWSHEGSVTESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDSS
        EQKW HEG +TESLPNGMFRVRLDNEDLILGY+SGKIR++F+RILPGDRV+IEVSRYDST+GRI+YRLRS  KDS+
Subjt:  EQKWSHEGSVTESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDSS

Q7ICQ5 Translation initiation factor IF-1, chloroplastic1.2e-2982.67Show/hide
Query:  EQKWSHEGSVTESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDS
        EQKW HEG +TESLPNGMFRVRLDNEDLILGY+SGKIR++F+RILPGDRV+IEVSRYDST+GRI+YRLR+  KDS
Subjt:  EQKWSHEGSVTESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDS

Q94KR7 Translation initiation factor IF-1, chloroplastic7.3e-3257.14Show/hide
Query:  LQFPLL-PAAHLRPPSSSSSLSTLLFPSLRSHLSVVSIPFPTSTFLHSPYHASPRLSVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNEDLILGY
        L  P+L P     P  S +  S L  P     LS ++ P            A+P LS  + +    S EQKW HEG + ESLPNGMFRVRLDNEDLILGY
Subjt:  LQFPLL-PAAHLRPPSSSSSLSTLLFPSLRSHLSVVSIPFPTSTFLHSPYHASPRLSVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNEDLILGY

Query:  ISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSST
        ISGKIRKN+VRILPGDRV++EV+RYDS+KGRIVYRLRSST
Subjt:  ISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSST

Q94KR9 Translation initiation factor IF-1, chloroplastic5.2e-3083.1Show/hide
Query:  SSEQKWSHEGSVTESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLR
        S EQKW+HEGS+TESLPNGMFRV+LDN D++LGYISGKIRKNF+R+LPGDRV+IEVSRYDS+KGRI+YRLR
Subjt:  SSEQKWSHEGSVTESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLR

Arabidopsis top hitse value%identityAlignment
AT4G11175.1 Nucleic acid-binding, OB-fold-like protein2.4e-2265.79Show/hide
Query:  PKSDSSEQKWSHEGSVTESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRS
        P+      K   EG VTESLPNGMFRV L+N D ILGYI GKIRKNF+RILPGD+V++E+S YDSTKGRI++R+ S
Subjt:  PKSDSSEQKWSHEGSVTESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACCACAAATTTCCTCCAATTCCCGCTCCTCCCCGCCGCCCACCTCCGGCCACCATCCTCCTCCTCTTCTCTATCCACTCTTCTCTTCCCCTCTCTCAGATCGCA
TCTCTCCGTCGTCTCAATCCCTTTTCCAACCTCTACTTTCCTCCACAGCCCTTACCATGCTTCGCCAAGGCTCTCTGTCATGGCGAAGTCACCAAAAAGCGACAGCTCCG
AGCAGAAATGGAGCCACGAAGGCTCCGTTACCGAGTCTCTTCCCAATGGGATGTTCAGAGTGCGATTGGATAACGAAGACCTCATTCTTGGCTACATATCGGGTAAGATT
CGAAAGAATTTTGTGCGTATTTTGCCTGGAGACAGGGTCAGGATTGAAGTTAGTCGTTATGACTCTACTAAGGGCCGTATTGTCTATAGACTCCGGAGCAGTACTAAGGA
TTCATCTTCA
mRNA sequenceShow/hide mRNA sequence
ATGGCGACCACAAATTTCCTCCAATTCCCGCTCCTCCCCGCCGCCCACCTCCGGCCACCATCCTCCTCCTCTTCTCTATCCACTCTTCTCTTCCCCTCTCTCAGATCGCA
TCTCTCCGTCGTCTCAATCCCTTTTCCAACCTCTACTTTCCTCCACAGCCCTTACCATGCTTCGCCAAGGCTCTCTGTCATGGCGAAGTCACCAAAAAGCGACAGCTCCG
AGCAGAAATGGAGCCACGAAGGCTCCGTTACCGAGTCTCTTCCCAATGGGATGTTCAGAGTGCGATTGGATAACGAAGACCTCATTCTTGGCTACATATCGGGTAAGATT
CGAAAGAATTTTGTGCGTATTTTGCCTGGAGACAGGGTCAGGATTGAAGTTAGTCGTTATGACTCTACTAAGGGCCGTATTGTCTATAGACTCCGGAGCAGTACTAAGGA
TTCATCTTCA
Protein sequenceShow/hide protein sequence
MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHLSVVSIPFPTSTFLHSPYHASPRLSVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNEDLILGYISGKI
RKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDSSS