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MS021308 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS021308
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRING-H2 finger protein ATL60-like
Genome locationscaffold358:919648..920202
RNA-Seq ExpressionMS021308
SyntenyMS021308
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064334.1 RING-H2 finger protein ATL39-like [Cucumis melo var. makuwa]7.0e-5864.71Show/hide
Query:  MADPLLTLLFPMETLVPESPSPPIVHYTITLDLPTSIIFSFTVILFFLFLFHVLNGFLQWFLDVRHGGAGDVELGEAGSSFFQAVAQNNAWVVGAVERAV
        M DPLLTLLFPMET+VPES SPP++HYT+TLDL TSIIFSF++ILFFLFLFHVL+GFLQWFLDVR  G GD +                          V
Subjt:  MADPLLTLLFPMETLVPESPSPPIVHYTITLDLPTSIIFSFTVILFFLFLFHVLNGFLQWFLDVRHGGAGDVELGEAGSSFFQAVAQNNAWVVGAVERAV

Query:  ERVVAKLEERRVRRPER--LPPVVRFGSEKMRRRSENEECAICLEEFLAGEICQALPECNHFFHSDCIDVWFRKKFTCPVCRNCISA
        E  +A  EERR++R E+  LPP V+FGSEKM RR   EECAICLEEFLAGE CQALPEC+HFFHS+CI+VWF KKFTCP+CRNC++A
Subjt:  ERVVAKLEERRVRRPER--LPPVVRFGSEKMRRRSENEECAICLEEFLAGEICQALPECNHFFHSDCIDVWFRKKFTCPVCRNCISA

XP_008453063.1 PREDICTED: RING-H2 finger protein ATL39-like [Cucumis melo]7.0e-5864.71Show/hide
Query:  MADPLLTLLFPMETLVPESPSPPIVHYTITLDLPTSIIFSFTVILFFLFLFHVLNGFLQWFLDVRHGGAGDVELGEAGSSFFQAVAQNNAWVVGAVERAV
        M DPLLTLLFPMET+VPES SPP++HYT+TLDL TSIIFSF++ILFFLFLFHVL+GFLQWFLDVR  G GD +                          V
Subjt:  MADPLLTLLFPMETLVPESPSPPIVHYTITLDLPTSIIFSFTVILFFLFLFHVLNGFLQWFLDVRHGGAGDVELGEAGSSFFQAVAQNNAWVVGAVERAV

Query:  ERVVAKLEERRVRRPER--LPPVVRFGSEKMRRRSENEECAICLEEFLAGEICQALPECNHFFHSDCIDVWFRKKFTCPVCRNCISA
        E  +A  EERR++R E+  LPP V+FGSEKM RR   EECAICLEEFLAGE CQALPEC+HFFHS+CI+VWF KKFTCP+CRNC++A
Subjt:  ERVVAKLEERRVRRPER--LPPVVRFGSEKMRRRSENEECAICLEEFLAGEICQALPECNHFFHSDCIDVWFRKKFTCPVCRNCISA

XP_022139402.1 RING-H2 finger protein ATL60-like [Momordica charantia]6.3e-9999.46Show/hide
Query:  MADPLLTLLFPMETLVPESPSPPIVHYTITLDLPTSIIFSFTVILFFLFLFHVLNGFLQWFLDVRHGGAGDVELGEAGSSFFQAVAQNNAWVVGAVERAV
        MADPLLTLLFPMETLVPESPSPPIVHYTITLDLPTSI+FSFTVILFFLFLFHVLNGFLQWFLDVRHGGAGDVELGEAGSSFFQAVAQNNAWVVGAVERAV
Subjt:  MADPLLTLLFPMETLVPESPSPPIVHYTITLDLPTSIIFSFTVILFFLFLFHVLNGFLQWFLDVRHGGAGDVELGEAGSSFFQAVAQNNAWVVGAVERAV

Query:  ERVVAKLEERRVRRPERLPPVVRFGSEKMRRRSENEECAICLEEFLAGEICQALPECNHFFHSDCIDVWFRKKFTCPVCRNCISA
        ERVVAKLEERRVRRPERLPPVVRFGSEKMRRRSENEECAICLEEFLAGEICQALPECNHFFHSDCIDVWFRKKFTCPVCRNCISA
Subjt:  ERVVAKLEERRVRRPERLPPVVRFGSEKMRRRSENEECAICLEEFLAGEICQALPECNHFFHSDCIDVWFRKKFTCPVCRNCISA

XP_022976597.1 RING-H2 finger protein ATL39-like [Cucurbita maxima]1.1e-5565.59Show/hide
Query:  MADPLLTLLFPMETLVPESPSPP-IVHYTITLDLPTSIIFSFTVILFFLFLFHVLNGFLQWFLDVRHGGAGDVELGEAGSSFFQAVAQNNAWVVGAVERA
        MADPLLTLLFPMET+V ES SPP IVHYT+TLDL TSIIFS T+ILFFLFL+HVL+GFLQWFL  R G  GDVE G                        
Subjt:  MADPLLTLLFPMETLVPESPSPP-IVHYTITLDLPTSIIFSFTVILFFLFLFHVLNGFLQWFLDVRHGGAGDVELGEAGSSFFQAVAQNNAWVVGAVERA

Query:  VERVVAKLEERRVRRPERLPPVVRFGSEKMRRRSENEECAICLEEFLAGEICQALPECNHFFHSDCIDVWFRKKFTCPVCRNCISA
                EERRVRR E++P  VRFGSE+M RR   EECAICLEEF+AGE CQALPECNHFFHSDCIDVWF KKFTCP+CR+CI+A
Subjt:  VERVVAKLEERRVRRPERLPPVVRFGSEKMRRRSENEECAICLEEFLAGEICQALPECNHFFHSDCIDVWFRKKFTCPVCRNCISA

XP_031740449.1 RING-H2 finger protein ATL39-like [Cucumis sativus]8.3e-5965.08Show/hide
Query:  MADPLLTLLFPMETLVPESPSPPIVHYTITLDLPTSIIFSFTVILFFLFLFHVLNGFLQWFLDVRHGGAG--DVELGEAGSSFFQAVAQNNAWVVGAVER
        M DPLLTLLFPMET+VPESPSPP++HYT+TLD+ TSIIFSF++ILFFLFLFHVL+GFLQWFLDVR  G G  DVE                         
Subjt:  MADPLLTLLFPMETLVPESPSPPIVHYTITLDLPTSIIFSFTVILFFLFLFHVLNGFLQWFLDVRHGGAG--DVELGEAGSSFFQAVAQNNAWVVGAVER

Query:  AVERVVAKLEERRVRRPER--LPPVVRFGSEKMRRRSENEECAICLEEFLAGEICQALPECNHFFHSDCIDVWFRKKFTCPVCRNCISA
              A  EERR++R E+  LPP VRFGSEKM RR   EECAICLEEFL GE CQALPECNHFFHS+CIDVWF KKFTCP+CRNC++A
Subjt:  AVERVVAKLEERRVRRPER--LPPVVRFGSEKMRRRSENEECAICLEEFLAGEICQALPECNHFFHSDCIDVWFRKKFTCPVCRNCISA

TrEMBL top hitse value%identityAlignment
A0A0A0L062 RING-type domain-containing protein4.0e-5965.08Show/hide
Query:  MADPLLTLLFPMETLVPESPSPPIVHYTITLDLPTSIIFSFTVILFFLFLFHVLNGFLQWFLDVRHGGAG--DVELGEAGSSFFQAVAQNNAWVVGAVER
        M DPLLTLLFPMET+VPESPSPP++HYT+TLD+ TSIIFSF++ILFFLFLFHVL+GFLQWFLDVR  G G  DVE                         
Subjt:  MADPLLTLLFPMETLVPESPSPPIVHYTITLDLPTSIIFSFTVILFFLFLFHVLNGFLQWFLDVRHGGAG--DVELGEAGSSFFQAVAQNNAWVVGAVER

Query:  AVERVVAKLEERRVRRPER--LPPVVRFGSEKMRRRSENEECAICLEEFLAGEICQALPECNHFFHSDCIDVWFRKKFTCPVCRNCISA
              A  EERR++R E+  LPP VRFGSEKM RR   EECAICLEEFL GE CQALPECNHFFHS+CIDVWF KKFTCP+CRNC++A
Subjt:  AVERVVAKLEERRVRRPER--LPPVVRFGSEKMRRRSENEECAICLEEFLAGEICQALPECNHFFHSDCIDVWFRKKFTCPVCRNCISA

A0A1S3BVC7 RING-H2 finger protein ATL39-like3.4e-5864.71Show/hide
Query:  MADPLLTLLFPMETLVPESPSPPIVHYTITLDLPTSIIFSFTVILFFLFLFHVLNGFLQWFLDVRHGGAGDVELGEAGSSFFQAVAQNNAWVVGAVERAV
        M DPLLTLLFPMET+VPES SPP++HYT+TLDL TSIIFSF++ILFFLFLFHVL+GFLQWFLDVR  G GD +                          V
Subjt:  MADPLLTLLFPMETLVPESPSPPIVHYTITLDLPTSIIFSFTVILFFLFLFHVLNGFLQWFLDVRHGGAGDVELGEAGSSFFQAVAQNNAWVVGAVERAV

Query:  ERVVAKLEERRVRRPER--LPPVVRFGSEKMRRRSENEECAICLEEFLAGEICQALPECNHFFHSDCIDVWFRKKFTCPVCRNCISA
        E  +A  EERR++R E+  LPP V+FGSEKM RR   EECAICLEEFLAGE CQALPEC+HFFHS+CI+VWF KKFTCP+CRNC++A
Subjt:  ERVVAKLEERRVRRPER--LPPVVRFGSEKMRRRSENEECAICLEEFLAGEICQALPECNHFFHSDCIDVWFRKKFTCPVCRNCISA

A0A5A7VAT0 RING-H2 finger protein ATL39-like3.4e-5864.71Show/hide
Query:  MADPLLTLLFPMETLVPESPSPPIVHYTITLDLPTSIIFSFTVILFFLFLFHVLNGFLQWFLDVRHGGAGDVELGEAGSSFFQAVAQNNAWVVGAVERAV
        M DPLLTLLFPMET+VPES SPP++HYT+TLDL TSIIFSF++ILFFLFLFHVL+GFLQWFLDVR  G GD +                          V
Subjt:  MADPLLTLLFPMETLVPESPSPPIVHYTITLDLPTSIIFSFTVILFFLFLFHVLNGFLQWFLDVRHGGAGDVELGEAGSSFFQAVAQNNAWVVGAVERAV

Query:  ERVVAKLEERRVRRPER--LPPVVRFGSEKMRRRSENEECAICLEEFLAGEICQALPECNHFFHSDCIDVWFRKKFTCPVCRNCISA
        E  +A  EERR++R E+  LPP V+FGSEKM RR   EECAICLEEFLAGE CQALPEC+HFFHS+CI+VWF KKFTCP+CRNC++A
Subjt:  ERVVAKLEERRVRRPER--LPPVVRFGSEKMRRRSENEECAICLEEFLAGEICQALPECNHFFHSDCIDVWFRKKFTCPVCRNCISA

A0A5D3D9M0 RING-H2 finger protein ATL39-like3.4e-5864.71Show/hide
Query:  MADPLLTLLFPMETLVPESPSPPIVHYTITLDLPTSIIFSFTVILFFLFLFHVLNGFLQWFLDVRHGGAGDVELGEAGSSFFQAVAQNNAWVVGAVERAV
        M DPLLTLLFPMET+VPES SPP++HYT+TLDL TSIIFSF++ILFFLFLFHVL+GFLQWFLDVR  G GD +                          V
Subjt:  MADPLLTLLFPMETLVPESPSPPIVHYTITLDLPTSIIFSFTVILFFLFLFHVLNGFLQWFLDVRHGGAGDVELGEAGSSFFQAVAQNNAWVVGAVERAV

Query:  ERVVAKLEERRVRRPER--LPPVVRFGSEKMRRRSENEECAICLEEFLAGEICQALPECNHFFHSDCIDVWFRKKFTCPVCRNCISA
        E  +A  EERR++R E+  LPP V+FGSEKM RR   EECAICLEEFLAGE CQALPEC+HFFHS+CI+VWF KKFTCP+CRNC++A
Subjt:  ERVVAKLEERRVRRPER--LPPVVRFGSEKMRRRSENEECAICLEEFLAGEICQALPECNHFFHSDCIDVWFRKKFTCPVCRNCISA

A0A6J1CDV3 RING-H2 finger protein ATL60-like3.0e-9999.46Show/hide
Query:  MADPLLTLLFPMETLVPESPSPPIVHYTITLDLPTSIIFSFTVILFFLFLFHVLNGFLQWFLDVRHGGAGDVELGEAGSSFFQAVAQNNAWVVGAVERAV
        MADPLLTLLFPMETLVPESPSPPIVHYTITLDLPTSI+FSFTVILFFLFLFHVLNGFLQWFLDVRHGGAGDVELGEAGSSFFQAVAQNNAWVVGAVERAV
Subjt:  MADPLLTLLFPMETLVPESPSPPIVHYTITLDLPTSIIFSFTVILFFLFLFHVLNGFLQWFLDVRHGGAGDVELGEAGSSFFQAVAQNNAWVVGAVERAV

Query:  ERVVAKLEERRVRRPERLPPVVRFGSEKMRRRSENEECAICLEEFLAGEICQALPECNHFFHSDCIDVWFRKKFTCPVCRNCISA
        ERVVAKLEERRVRRPERLPPVVRFGSEKMRRRSENEECAICLEEFLAGEICQALPECNHFFHSDCIDVWFRKKFTCPVCRNCISA
Subjt:  ERVVAKLEERRVRRPERLPPVVRFGSEKMRRRSENEECAICLEEFLAGEICQALPECNHFFHSDCIDVWFRKKFTCPVCRNCISA

SwissProt top hitse value%identityAlignment
P0C034 RING-H2 finger protein ATL105.5e-1349.25Show/hide
Query:  RLPPVVRFGSEKMRRRSENEECAICLEEFLAGEICQALPECNHFFHSDCIDVWFRKKFTCPVCRNCI
        R+ PVV + S +M     +EEC ICL +F++GE  + LP+CNH FH  CID W ++  TCP CRNC+
Subjt:  RLPPVVRFGSEKMRRRSENEECAICLEEFLAGEICQALPECNHFFHSDCIDVWFRKKFTCPVCRNCI

Q6NML0 E3 ubiquitin-protein ligase ATL763.5e-1247.76Show/hide
Query:  RLPPVVRFGSEKMRRRSENEECAICLEEFLAGEICQALPECNHFFHSDCIDVWFRKKFTCPVCRNCI
        R+ PVV + S +M      EEC ICL +F++GE  + LP+CNH FH  CID W +   TCP CR+C+
Subjt:  RLPPVVRFGSEKMRRRSENEECAICLEEFLAGEICQALPECNHFFHSDCIDVWFRKKFTCPVCRNCI

Q94BY6 RING-H2 finger protein ATL751.0e-1146.27Show/hide
Query:  RLPPVVRFGSEKMRRRSENEECAICLEEFLAGEICQALPECNHFFHSDCIDVWFRKKFTCPVCRNCI
        R+ PVV + S +M      EEC ICL +F++GE  + LP+C+H FH  CID W ++  TCP CR+C+
Subjt:  RLPPVVRFGSEKMRRRSENEECAICLEEFLAGEICQALPECNHFFHSDCIDVWFRKKFTCPVCRNCI

Q9LS99 RING-H2 finger protein ATL774.6e-1246.27Show/hide
Query:  RLPPVVRFGSEKMRRRSENEECAICLEEFLAGEICQALPECNHFFHSDCIDVWFRKKFTCPVCRNCI
        ++ PVV + S ++      EEC ICL +F+AGE  + LP+CNH FH  CID W  +  TCP CR+C+
Subjt:  RLPPVVRFGSEKMRRRSENEECAICLEEFLAGEICQALPECNHFFHSDCIDVWFRKKFTCPVCRNCI

Q9XF63 RING-H2 finger protein ATL37.9e-1243.75Show/hide
Query:  PVVRFGSEKMRRRSENEECAICLEEFLAGEICQALPECNHFFHSDCIDVWFRKKFTCPVCRNCI
        P+V F  +  +   +  EC+ICL E + G+  + LP+CNH FH +CID+WF+   TCP+CRN +
Subjt:  PVVRFGSEKMRRRSENEECAICLEEFLAGEICQALPECNHFFHSDCIDVWFRKKFTCPVCRNCI

Arabidopsis top hitse value%identityAlignment
AT1G49200.1 RING/U-box superfamily protein7.3e-1346.27Show/hide
Query:  RLPPVVRFGSEKMRRRSENEECAICLEEFLAGEICQALPECNHFFHSDCIDVWFRKKFTCPVCRNCI
        R+ PVV + S +M      EEC ICL +F++GE  + LP+C+H FH  CID W ++  TCP CR+C+
Subjt:  RLPPVVRFGSEKMRRRSENEECAICLEEFLAGEICQALPECNHFFHSDCIDVWFRKKFTCPVCRNCI

AT1G49210.1 RING/U-box superfamily protein2.5e-1347.76Show/hide
Query:  RLPPVVRFGSEKMRRRSENEECAICLEEFLAGEICQALPECNHFFHSDCIDVWFRKKFTCPVCRNCI
        R+ PVV + S +M      EEC ICL +F++GE  + LP+CNH FH  CID W +   TCP CR+C+
Subjt:  RLPPVVRFGSEKMRRRSENEECAICLEEFLAGEICQALPECNHFFHSDCIDVWFRKKFTCPVCRNCI

AT1G49220.1 RING/U-box superfamily protein3.9e-1449.25Show/hide
Query:  RLPPVVRFGSEKMRRRSENEECAICLEEFLAGEICQALPECNHFFHSDCIDVWFRKKFTCPVCRNCI
        R+ PVV + S +M     +EEC ICL +F++GE  + LP+CNH FH  CID W ++  TCP CRNC+
Subjt:  RLPPVVRFGSEKMRRRSENEECAICLEEFLAGEICQALPECNHFFHSDCIDVWFRKKFTCPVCRNCI

AT1G72310.1 RING/U-box superfamily protein5.6e-1343.75Show/hide
Query:  PVVRFGSEKMRRRSENEECAICLEEFLAGEICQALPECNHFFHSDCIDVWFRKKFTCPVCRNCI
        P+V F  +  +   +  EC+ICL E + G+  + LP+CNH FH +CID+WF+   TCP+CRN +
Subjt:  PVVRFGSEKMRRRSENEECAICLEEFLAGEICQALPECNHFFHSDCIDVWFRKKFTCPVCRNCI

AT3G18773.1 RING/U-box superfamily protein3.3e-1346.27Show/hide
Query:  RLPPVVRFGSEKMRRRSENEECAICLEEFLAGEICQALPECNHFFHSDCIDVWFRKKFTCPVCRNCI
        ++ PVV + S ++      EEC ICL +F+AGE  + LP+CNH FH  CID W  +  TCP CR+C+
Subjt:  RLPPVVRFGSEKMRRRSENEECAICLEEFLAGEICQALPECNHFFHSDCIDVWFRKKFTCPVCRNCI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGACCCATTACTCACTCTCCTCTTCCCAATGGAAACCTTAGTTCCCGAATCGCCGTCTCCCCCAATCGTCCACTACACCATAACCCTCGACCTCCCGACCTCCAT
AATCTTCTCCTTCACCGTGATCCTCTTCTTCCTCTTCCTCTTCCACGTCCTCAACGGCTTCCTCCAGTGGTTCCTCGACGTCCGGCACGGCGGCGCCGGGGACGTGGAGC
TCGGGGAGGCCGGGTCTTCGTTCTTCCAGGCGGTGGCGCAGAACAACGCGTGGGTTGTGGGGGCGGTTGAGCGGGCGGTGGAGCGGGTGGTGGCGAAGCTGGAGGAGCGG
CGGGTGCGGCGGCCAGAGAGACTGCCGCCGGTGGTGAGATTCGGGAGCGAGAAGATGAGGAGGAGGAGCGAGAATGAGGAGTGCGCCATTTGTTTGGAGGAGTTTCTGGC
CGGAGAAATTTGCCAGGCCTTGCCGGAATGCAACCATTTTTTTCATTCCGATTGTATTGATGTTTGGTTCAGGAAGAAATTCACCTGCCCCGTTTGTCGTAATTGTATTT
CAGCT
mRNA sequenceShow/hide mRNA sequence
ATGGCGGACCCATTACTCACTCTCCTCTTCCCAATGGAAACCTTAGTTCCCGAATCGCCGTCTCCCCCAATCGTCCACTACACCATAACCCTCGACCTCCCGACCTCCAT
AATCTTCTCCTTCACCGTGATCCTCTTCTTCCTCTTCCTCTTCCACGTCCTCAACGGCTTCCTCCAGTGGTTCCTCGACGTCCGGCACGGCGGCGCCGGGGACGTGGAGC
TCGGGGAGGCCGGGTCTTCGTTCTTCCAGGCGGTGGCGCAGAACAACGCGTGGGTTGTGGGGGCGGTTGAGCGGGCGGTGGAGCGGGTGGTGGCGAAGCTGGAGGAGCGG
CGGGTGCGGCGGCCAGAGAGACTGCCGCCGGTGGTGAGATTCGGGAGCGAGAAGATGAGGAGGAGGAGCGAGAATGAGGAGTGCGCCATTTGTTTGGAGGAGTTTCTGGC
CGGAGAAATTTGCCAGGCCTTGCCGGAATGCAACCATTTTTTTCATTCCGATTGTATTGATGTTTGGTTCAGGAAGAAATTCACCTGCCCCGTTTGTCGTAATTGTATTT
CAGCT
Protein sequenceShow/hide protein sequence
MADPLLTLLFPMETLVPESPSPPIVHYTITLDLPTSIIFSFTVILFFLFLFHVLNGFLQWFLDVRHGGAGDVELGEAGSSFFQAVAQNNAWVVGAVERAVERVVAKLEER
RVRRPERLPPVVRFGSEKMRRRSENEECAICLEEFLAGEICQALPECNHFFHSDCIDVWFRKKFTCPVCRNCISA