; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS021362 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS021362
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionglycine-rich RNA-binding protein 4, mitochondrial
Genome locationscaffold358:1411780..1412610
RNA-Seq ExpressionMS021362
SyntenyMS021362
Gene Ontology termsGO:0080156 - mitochondrial mRNA modification (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004151968.1 organelle RRM domain-containing protein 2, mitochondrial [Cucumis sativus]1.2e-5784.62Show/hide
Query:  MALRSAAAAAPRSLRRLLSRTSTFTPSMISHSIRDWEKPEPSANSFVSGRLFSGASTSSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFA
        MALRSAAA+APRSLR+L++RTST T  +IS +I DWEKPEPS  +F+SGRLFS ASTSSFIPPPLPPSAQQRE  EPSTNLFVSGLSKRTTTEKLHE FA
Subjt:  MALRSAAAAAPRSLRRLLSRTSTFTPSMISHSIRDWEKPEPSANSFVSGRLFSGASTSSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFA

Query:  QFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK
        +FGEV HARVVTDRVTGYSKGFGFVKYA LEDAAKGIEGMDGK
Subjt:  QFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK

XP_008454580.1 PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo]3.9e-5682.52Show/hide
Query:  MALRSAAAAAPRSLRRLLSRTSTFTPSMISHSIRDWEKPEPSANSFVSGRLFSGASTSSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFA
        MALRSAAA+APRSLR+L++ TST T  +IS +I DWEKP PS NSF+ GRLFS ASTSSF+PPPLPPSAQQRE  EPSTNLFVSGLSKRTTTEKLHE F+
Subjt:  MALRSAAAAAPRSLRRLLSRTSTFTPSMISHSIRDWEKPEPSANSFVSGRLFSGASTSSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFA

Query:  QFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK
        +FGEVVHARVVTDR TGYSKGFGFVKYA LEDAAKGIEGMDGK
Subjt:  QFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK

XP_022139714.1 organelle RRM domain-containing protein 2, mitochondrial [Momordica charantia]4.0e-6998.6Show/hide
Query:  MALRSAAAAAPRSLRRLLSRTSTFTPSMISHSIRDWEKPEPSANSFVSGRLFSGASTSSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFA
        MALRSAAAAAPRSLRRLLSRTSTFTPS ISHSIRDWEKPEPSANSFVS RLFSGASTSSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFA
Subjt:  MALRSAAAAAPRSLRRLLSRTSTFTPSMISHSIRDWEKPEPSANSFVSGRLFSGASTSSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFA

Query:  QFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK
        QFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK
Subjt:  QFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK

XP_022976594.1 organelle RRM domain-containing protein 2, mitochondrial-like [Cucurbita maxima]7.8e-5784.62Show/hide
Query:  MALRSAAAAAPRSLRRLLSRTSTFTPSMISHSIRDWEKPEPSANSFVSGRLFSGASTSSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFA
        MALRSAAAAAPRSLRRL++ TS  T  M   +I D EKP P+ N+FVSGRLFS ASTSSFIPPPLPPSA QRE+PEPSTNLFVSGLSKRTTTEKLHETFA
Subjt:  MALRSAAAAAPRSLRRLLSRTSTFTPSMISHSIRDWEKPEPSANSFVSGRLFSGASTSSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFA

Query:  QFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK
        +FGEVVHARVVTDRVTGYSKGFGFVKYA LEDAAKGIEGMDGK
Subjt:  QFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK

XP_038896843.1 organelle RRM domain-containing protein 2, mitochondrial [Benincasa hispida]3.8e-5986.71Show/hide
Query:  MALRSAAAAAPRSLRRLLSRTSTFTPSMISHSIRDWEKPEPSANSFVSGRLFSGASTSSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFA
        MALRSAAAAAPRSLRRL++ TST T  +IS +I DWEK EPS N+F+SGRLFS ASTSSFIPPPLPPSAQQRE+PEPSTNLFVSGLSKRTTTEKLHE FA
Subjt:  MALRSAAAAAPRSLRRLLSRTSTFTPSMISHSIRDWEKPEPSANSFVSGRLFSGASTSSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFA

Query:  QFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK
        +FGEVVHARVVTDRVTGYSKGFGFVKYA LEDAAKGIEGMDGK
Subjt:  QFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK

TrEMBL top hitse value%identityAlignment
A0A0A0LD10 RRM domain-containing protein5.8e-5884.62Show/hide
Query:  MALRSAAAAAPRSLRRLLSRTSTFTPSMISHSIRDWEKPEPSANSFVSGRLFSGASTSSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFA
        MALRSAAA+APRSLR+L++RTST T  +IS +I DWEKPEPS  +F+SGRLFS ASTSSFIPPPLPPSAQQRE  EPSTNLFVSGLSKRTTTEKLHE FA
Subjt:  MALRSAAAAAPRSLRRLLSRTSTFTPSMISHSIRDWEKPEPSANSFVSGRLFSGASTSSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFA

Query:  QFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK
        +FGEV HARVVTDRVTGYSKGFGFVKYA LEDAAKGIEGMDGK
Subjt:  QFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK

A0A1S3C066 glycine-rich RNA-binding protein 4, mitochondrial1.9e-5682.52Show/hide
Query:  MALRSAAAAAPRSLRRLLSRTSTFTPSMISHSIRDWEKPEPSANSFVSGRLFSGASTSSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFA
        MALRSAAA+APRSLR+L++ TST T  +IS +I DWEKP PS NSF+ GRLFS ASTSSF+PPPLPPSAQQRE  EPSTNLFVSGLSKRTTTEKLHE F+
Subjt:  MALRSAAAAAPRSLRRLLSRTSTFTPSMISHSIRDWEKPEPSANSFVSGRLFSGASTSSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFA

Query:  QFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK
        +FGEVVHARVVTDR TGYSKGFGFVKYA LEDAAKGIEGMDGK
Subjt:  QFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK

A0A5D3DR24 Glycine-rich RNA-binding protein 41.9e-5682.52Show/hide
Query:  MALRSAAAAAPRSLRRLLSRTSTFTPSMISHSIRDWEKPEPSANSFVSGRLFSGASTSSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFA
        MALRSAAA+APRSLR+L++ TST T  +IS +I DWEKP PS NSF+ GRLFS ASTSSF+PPPLPPSAQQRE  EPSTNLFVSGLSKRTTTEKLHE F+
Subjt:  MALRSAAAAAPRSLRRLLSRTSTFTPSMISHSIRDWEKPEPSANSFVSGRLFSGASTSSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFA

Query:  QFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK
        +FGEVVHARVVTDR TGYSKGFGFVKYA LEDAAKGIEGMDGK
Subjt:  QFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK

A0A6J1CDT1 organelle RRM domain-containing protein 2, mitochondrial1.9e-6998.6Show/hide
Query:  MALRSAAAAAPRSLRRLLSRTSTFTPSMISHSIRDWEKPEPSANSFVSGRLFSGASTSSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFA
        MALRSAAAAAPRSLRRLLSRTSTFTPS ISHSIRDWEKPEPSANSFVS RLFSGASTSSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFA
Subjt:  MALRSAAAAAPRSLRRLLSRTSTFTPSMISHSIRDWEKPEPSANSFVSGRLFSGASTSSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFA

Query:  QFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK
        QFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK
Subjt:  QFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK

A0A6J1INZ4 organelle RRM domain-containing protein 2, mitochondrial-like3.8e-5784.62Show/hide
Query:  MALRSAAAAAPRSLRRLLSRTSTFTPSMISHSIRDWEKPEPSANSFVSGRLFSGASTSSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFA
        MALRSAAAAAPRSLRRL++ TS  T  M   +I D EKP P+ N+FVSGRLFS ASTSSFIPPPLPPSA QRE+PEPSTNLFVSGLSKRTTTEKLHETFA
Subjt:  MALRSAAAAAPRSLRRLLSRTSTFTPSMISHSIRDWEKPEPSANSFVSGRLFSGASTSSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFA

Query:  QFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK
        +FGEVVHARVVTDRVTGYSKGFGFVKYA LEDAAKGIEGMDGK
Subjt:  QFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK

SwissProt top hitse value%identityAlignment
Q99070 Glycine-rich RNA-binding protein 21.7e-0946.77Show/hide
Query:  FVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK
        FV GL+  T  E L + FA FG+V+ ++V+TDR TG S+GFGFV +++ +     IE M+GK
Subjt:  FVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK

Q9FIU6 Organelle RRM domain-containing protein 2, mitochondrial1.1e-2668.42Show/hide
Query:  RLF-SGASTSSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK
        RLF S AS  SF+ P        R + EPSTNLFVSGLSKRTT+E L   FAQFGEV  A+VVTDRV+GYSKGFGFV+YA LED+AKGI GMDGK
Subjt:  RLF-SGASTSSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK

Q9FX45 Organelle RRM domain-containing protein 6, chloroplastic1.2e-1243.88Show/hide
Query:  VSGRLFSGA-STSSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK
        + G L S   ST S   PP   S        P T L+VSGLS RTT + L +TF QFG ++H  +V D+V    KGF F++Y   E+A K I+GM GK
Subjt:  VSGRLFSGA-STSSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK

Q9LU44 Splicing factor-like protein 19.7e-1042.5Show/hide
Query:  PPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDG
        P  PPS +  E     TNL++  L      + L   F+ FGE+V A+V+ DRVTG SKG+GFVKYA+++ A   ++ M+G
Subjt:  PPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDG

Q9SVM8 Glycine-rich RNA-binding protein 2, mitochondrial9.7e-1050Show/hide
Query:  STNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK
        ST LF+ GLS  T    L + FA FG+VV A+V+ DR TG S+GFGFV + +   A   I  MDGK
Subjt:  STNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK

Arabidopsis top hitse value%identityAlignment
AT1G73530.1 RNA-binding (RRM/RBD/RNP motifs) family protein8.7e-1443.88Show/hide
Query:  VSGRLFSGA-STSSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK
        + G L S   ST S   PP   S        P T L+VSGLS RTT + L +TF QFG ++H  +V D+V    KGF F++Y   E+A K I+GM GK
Subjt:  VSGRLFSGA-STSSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK

AT2G37510.1 RNA-binding (RRM/RBD/RNP motifs) family protein7.9e-1548.48Show/hide
Query:  SFVSGRLFSGASTSSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK
        +FVS      A +SS +    P    +R     S  LFVSGLS+ TT EKL + FA FG++V ARV+TDR +G SKGFGFV YA +EDA K    M+ K
Subjt:  SFVSGRLFSGASTSSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK

AT4G13850.1 glycine-rich RNA-binding protein 26.9e-1150Show/hide
Query:  STNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK
        ST LF+ GLS  T    L + FA FG+VV A+V+ DR TG S+GFGFV + +   A   I  MDGK
Subjt:  STNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK

AT4G13850.2 glycine-rich RNA-binding protein 26.9e-1150Show/hide
Query:  STNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK
        ST LF+ GLS  T    L + FA FG+VV A+V+ DR TG S+GFGFV + +   A   I  MDGK
Subjt:  STNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK

AT5G54580.1 RNA-binding (RRM/RBD/RNP motifs) family protein8.1e-2868.42Show/hide
Query:  RLF-SGASTSSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK
        RLF S AS  SF+ P        R + EPSTNLFVSGLSKRTT+E L   FAQFGEV  A+VVTDRV+GYSKGFGFV+YA LED+AKGI GMDGK
Subjt:  RLF-SGASTSSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCTCAGATCGGCGGCGGCGGCGGCTCCTCGGAGTTTGAGGCGGCTTCTTTCTCGTACTTCAACTTTTACTCCATCGATGATCTCGCACTCTATTCGGGATTGGGA
GAAACCGGAGCCGAGCGCGAATTCCTTCGTTTCTGGCCGGCTGTTCTCCGGCGCTTCAACCTCCAGTTTCATTCCTCCGCCGCTCCCTCCGTCCGCTCAGCAGCGTGAGA
AGCCTGAGCCTAGTACTAACCTTTTCGTTTCCGGCCTCAGTAAACGCACTACTACCGAAAAGCTTCATGAAACCTTCGCACAGTTTGGTGAAGTTGTTCATGCTAGAGTT
GTGACTGATCGAGTGACAGGATATTCTAAAGGATTTGGCTTTGTTAAATATGCCAATTTGGAAGATGCGGCTAAAGGCATAGAGGGTATGGATGGAAAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTCTCAGATCGGCGGCGGCGGCGGCTCCTCGGAGTTTGAGGCGGCTTCTTTCTCGTACTTCAACTTTTACTCCATCGATGATCTCGCACTCTATTCGGGATTGGGA
GAAACCGGAGCCGAGCGCGAATTCCTTCGTTTCTGGCCGGCTGTTCTCCGGCGCTTCAACCTCCAGTTTCATTCCTCCGCCGCTCCCTCCGTCCGCTCAGCAGCGTGAGA
AGCCTGAGCCTAGTACTAACCTTTTCGTTTCCGGCCTCAGTAAACGCACTACTACCGAAAAGCTTCATGAAACCTTCGCACAGTTTGGTGAAGTTGTTCATGCTAGAGTT
GTGACTGATCGAGTGACAGGATATTCTAAAGGATTTGGCTTTGTTAAATATGCCAATTTGGAAGATGCGGCTAAAGGCATAGAGGGTATGGATGGAAAG
Protein sequenceShow/hide protein sequence
MALRSAAAAAPRSLRRLLSRTSTFTPSMISHSIRDWEKPEPSANSFVSGRLFSGASTSSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHARV
VTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK