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MS021446 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS021446
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold381:36387..37851
RNA-Seq ExpressionMS021446
SyntenyMS021446
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_016903187.1 PREDICTED: uncharacterized protein LOC103502263 [Cucumis melo]5.4e-1435.4Show/hide
Query:  MFIFRLRGFHSLSDAIFLLTQLTTDHTADLKCSPATFSLTVSNIGHRFSVALRLAPQSFIHHFADGTHRAGISLDALYDHMREATRFSSMTFTLSGTAPL
        MF+ RL+ F  L DA   L Q+  +  AD+K +P  FS+  SN   RF   L++    FI++  D  H + ISL++ +D + +     SMT  L      
Subjt:  MFIFRLRGFHSLSDAIFLLTQLTTDHTADLKCSPATFSLTVSNIGHRFSVALRLAPQSFIHHFADGTHRAGISLDALYDHMREATRFSSMTFTLSGTAPL

Query:  VSLQFRGRGR-PMLFRELSLTDSVEGDDNVGEIDYTTFVAIDSEEFRNIITEFNLYIGDDI
        + L+F      P +  ELSLT S E D  +GE+DY  F +IDS++ R +I    ++ GD I
Subjt:  VSLQFRGRGR-PMLFRELSLTDSVEGDDNVGEIDYTTFVAIDSEEFRNIITEFNLYIGDDI

XP_022145570.1 uncharacterized protein LOC111014988 [Momordica charantia]2.2e-1539.13Show/hide
Query:  MFIFRLRGFHSLSDAIFLLTQLTTDHTADLKCSPATFSLTVSNIGHRFSVALRLAPQSFIHHFADGTHRAGISLDALYDHMREATRFSSMTFTLSGTAPL
        MF+ RL+    L DAI  LT++ T   AD+K SP  F + VS I   F  AL+++P+ F     DG H + I LD+L+  + +   + +MTF L      
Subjt:  MFIFRLRGFHSLSDAIFLLTQLTTDHTADLKCSPATFSLTVSNIGHRFSVALRLAPQSFIHHFADGTHRAGISLDALYDHMREATRFSSMTFTLSGTAPL

Query:  VSLQF-RGRGRPMLFRELSLTDSVEGDDNVGEIDYTTFVAIDSEEFRNIITEFNLYIGDDI
        + L+F   R  P   REL L+ S E D  VGEIDY   V+I S+EFR+I+T+ + Y    I
Subjt:  VSLQF-RGRGRPMLFRELSLTDSVEGDDNVGEIDYTTFVAIDSEEFRNIITEFNLYIGDDI

XP_022958857.1 uncharacterized protein LOC111460011 [Cucurbita moschata]5.0e-1235.53Show/hide
Query:  MFIFRLRGFHSLSDAIFLLTQLTTDHTADLKCSPATFSLTVSNIGHRFSVALRLAPQSFIHHFADGTHRAGISLDALYDHMREATRFSSMTFTLSGTAPL
        MF+ RL  F  L +A  +L Q++ +  ADLK S + FSL  S   HRF    +++ + F ++F D  H + +SL + Y+ M     FSSMT     T   
Subjt:  MFIFRLRGFHSLSDAIFLLTQLTTDHTADLKCSPATFSLTVSNIGHRFSVALRLAPQSFIHHFADGTHRAGISLDALYDHMREATRFSSMTFTLSGTAPL

Query:  VSLQFRGRG--RPMLFRELSLTDSVEGDDNVGEIDYTTFVAIDSEEFRNIIT
        + LQF      R  + R L L+ S E  + +G+I +  F +I S++FR+IIT
Subjt:  VSLQFRGRG--RPMLFRELSLTDSVEGDDNVGEIDYTTFVAIDSEEFRNIIT

XP_023548334.1 uncharacterized protein LOC111807002 [Cucurbita pepo subsp. pepo]1.9e-1133.95Show/hide
Query:  MFIFRLRGFHSLSDAIFLLTQLTTDHTADLKCSPATFSLTVSNIGHRFSVALRLAPQSFIHHFADGTHRAGISLDALYDHMREATRFSSMTFTLSGTAPL
        MF+ RL  F  L +A  +L Q++  H ADLK S + FSL  S    RF    +++ + F ++F D  H + +SL + Y+ M     FSSMT     T   
Subjt:  MFIFRLRGFHSLSDAIFLLTQLTTDHTADLKCSPATFSLTVSNIGHRFSVALRLAPQSFIHHFADGTHRAGISLDALYDHMREATRFSSMTFTLSGTAPL

Query:  VSLQFRGRG--RPMLFRELSLTDSVEGDDNVGEIDYTTFVAIDSEEFRNIITEFNLYIGDDI
        + LQF      R  + R L L+ S E  + +G+I +  F +I S++FR+I+T    +  D I
Subjt:  VSLQFRGRG--RPMLFRELSLTDSVEGDDNVGEIDYTTFVAIDSEEFRNIITEFNLYIGDDI

XP_023548338.1 uncharacterized protein LOC111807006 [Cucurbita pepo subsp. pepo]3.8e-1237.97Show/hide
Query:  MFIFRLRGFHSLSDAIFLLTQLTTDHTADLKCSPATFSLTVSNIGHRFSVALRLAPQSFIHHFADGTHRAGISLDAL---YDHMREATRFSSMTFTLSGT
        M  FRL  F  L DAI +L+ +     A++K + +T +L+V+    RF  AL++ P+ F    +D TH++ I LD L    D M E   FSSM F +  +
Subjt:  MFIFRLRGFHSLSDAIFLLTQLTTDHTADLKCSPATFSLTVSNIGHRFSVALRLAPQSFIHHFADGTHRAGISLDAL---YDHMREATRFSSMTFTLSGT

Query:  APLVSLQFRGRGRPMLFRELSLTDSVEGDDNVGEIDYTTFVAIDSEEFRNIITEFNLY
           V L F+    P + REL L  S    +N+ +IDY TFV+IDS +FR ++ E N Y
Subjt:  APLVSLQFRGRGRPMLFRELSLTDSVEGDDNVGEIDYTTFVAIDSEEFRNIITEFNLY

TrEMBL top hitse value%identityAlignment
A0A1S4E4N8 uncharacterized protein LOC1035022632.6e-1435.4Show/hide
Query:  MFIFRLRGFHSLSDAIFLLTQLTTDHTADLKCSPATFSLTVSNIGHRFSVALRLAPQSFIHHFADGTHRAGISLDALYDHMREATRFSSMTFTLSGTAPL
        MF+ RL+ F  L DA   L Q+  +  AD+K +P  FS+  SN   RF   L++    FI++  D  H + ISL++ +D + +     SMT  L      
Subjt:  MFIFRLRGFHSLSDAIFLLTQLTTDHTADLKCSPATFSLTVSNIGHRFSVALRLAPQSFIHHFADGTHRAGISLDALYDHMREATRFSSMTFTLSGTAPL

Query:  VSLQFRGRGR-PMLFRELSLTDSVEGDDNVGEIDYTTFVAIDSEEFRNIITEFNLYIGDDI
        + L+F      P +  ELSLT S E D  +GE+DY  F +IDS++ R +I    ++ GD I
Subjt:  VSLQFRGRGR-PMLFRELSLTDSVEGDDNVGEIDYTTFVAIDSEEFRNIITEFNLYIGDDI

A0A6J1CUU8 uncharacterized protein LOC1110149881.1e-1539.13Show/hide
Query:  MFIFRLRGFHSLSDAIFLLTQLTTDHTADLKCSPATFSLTVSNIGHRFSVALRLAPQSFIHHFADGTHRAGISLDALYDHMREATRFSSMTFTLSGTAPL
        MF+ RL+    L DAI  LT++ T   AD+K SP  F + VS I   F  AL+++P+ F     DG H + I LD+L+  + +   + +MTF L      
Subjt:  MFIFRLRGFHSLSDAIFLLTQLTTDHTADLKCSPATFSLTVSNIGHRFSVALRLAPQSFIHHFADGTHRAGISLDALYDHMREATRFSSMTFTLSGTAPL

Query:  VSLQF-RGRGRPMLFRELSLTDSVEGDDNVGEIDYTTFVAIDSEEFRNIITEFNLYIGDDI
        + L+F   R  P   REL L+ S E D  VGEIDY   V+I S+EFR+I+T+ + Y    I
Subjt:  VSLQF-RGRGRPMLFRELSLTDSVEGDDNVGEIDYTTFVAIDSEEFRNIITEFNLYIGDDI

A0A6J1H2Z8 uncharacterized protein LOC1114600112.4e-1235.53Show/hide
Query:  MFIFRLRGFHSLSDAIFLLTQLTTDHTADLKCSPATFSLTVSNIGHRFSVALRLAPQSFIHHFADGTHRAGISLDALYDHMREATRFSSMTFTLSGTAPL
        MF+ RL  F  L +A  +L Q++ +  ADLK S + FSL  S   HRF    +++ + F ++F D  H + +SL + Y+ M     FSSMT     T   
Subjt:  MFIFRLRGFHSLSDAIFLLTQLTTDHTADLKCSPATFSLTVSNIGHRFSVALRLAPQSFIHHFADGTHRAGISLDALYDHMREATRFSSMTFTLSGTAPL

Query:  VSLQFRGRG--RPMLFRELSLTDSVEGDDNVGEIDYTTFVAIDSEEFRNIIT
        + LQF      R  + R L L+ S E  + +G+I +  F +I S++FR+IIT
Subjt:  VSLQFRGRG--RPMLFRELSLTDSVEGDDNVGEIDYTTFVAIDSEEFRNIIT

A0A6J1H490 uncharacterized protein LOC1114600131.7e-1034.36Show/hide
Query:  MFIFRLRGFHSLSDAIFLLTQLTTDHTADLKCSPATFSLTVSNIGHRFSVALRLAPQSFIHHFADGTHRAGISLDALYDHMREATRFSSMTFTLSGTAPL
        MF+ +L     LSDA+FL  QL+ +  AD+K +   FSLTVSN   RF + L +  + F  +  D      ISL      + +   +SSMTF +  T   
Subjt:  MFIFRLRGFHSLSDAIFLLTQLTTDHTADLKCSPATFSLTVSNIGHRFSVALRLAPQSFIHHFADGTHRAGISLDALYDHMREATRFSSMTFTLSGTAPL

Query:  VSLQFRGR---GRPMLFRELSLTDSVEGDDNVGEIDYTTFVAIDSEEFRNIITEFNLYIGDDI
        + L+F        P   REL+L  S E D  +GE++      I++E+FR+II E + +  D I
Subjt:  VSLQFRGR---GRPMLFRELSLTDSVEGDDNVGEIDYTTFVAIDSEEFRNIITEFNLYIGDDI

A0A6J1L0Z0 uncharacterized protein LOC1114988911.7e-1036.08Show/hide
Query:  MFIFRLRGFHSLSDAIFLLTQLTTDHTADLKCSPATFSLTVSNIGHRFSVALRLAPQSFIHHFADGTHRAGISLDAL---YDHMREATRFSSMTFTLSGT
        M +FRL  F  L DAI LL+ +     A++K + +T +L+V+     F   L++ P+ F   ++D  H + I LD L    D M E   FSSM F L  +
Subjt:  MFIFRLRGFHSLSDAIFLLTQLTTDHTADLKCSPATFSLTVSNIGHRFSVALRLAPQSFIHHFADGTHRAGISLDAL---YDHMREATRFSSMTFTLSGT

Query:  APLVSLQFRGRGRPMLFRELSLTDSVEGDDNVGEIDYTTFVAIDSEEFRNIITEFNLY
           V L F+    P + REL L       + + +IDY TFV+IDS +FR ++ E N Y
Subjt:  APLVSLQFRGRGRPMLFRELSLTDSVEGDDNVGEIDYTTFVAIDSEEFRNIITEFNLY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCATCTTCAGGCTTAGAGGCTTCCATAGTTTGTCAGATGCAATTTTCCTACTCACTCAACTTACCACTGACCACACCGCCGACCTGAAATGCTCGCCGGCGACCTT
CTCTCTGACAGTCTCCAACATCGGCCATCGCTTCTCCGTTGCCCTCCGATTGGCCCCGCAATCGTTCATCCACCATTTCGCCGACGGGACACACCGTGCCGGGATTTCGC
TCGACGCCCTCTATGATCATATGAGGGAAGCCACGAGATTTTCTTCAATGACCTTCACTCTTTCTGGCACTGCTCCTCTCGTCTCCCTTCAATTTCGTGGGCGTGGGCGA
CCAATGTTGTTTCGTGAATTGTCCTTGACGGATTCGGTAGAGGGAGATGATAATGTTGGTGAAATTGATTATACAACTTTTGTGGCAATTGATTCAGAAGAGTTTAGAAA
CATTATAACAGAGTTTAATCTTTACATAGGTGATGATATA
mRNA sequenceShow/hide mRNA sequence
ATGTTCATCTTCAGGCTTAGAGGCTTCCATAGTTTGTCAGATGCAATTTTCCTACTCACTCAACTTACCACTGACCACACCGCCGACCTGAAATGCTCGCCGGCGACCTT
CTCTCTGACAGTCTCCAACATCGGCCATCGCTTCTCCGTTGCCCTCCGATTGGCCCCGCAATCGTTCATCCACCATTTCGCCGACGGGACACACCGTGCCGGGATTTCGC
TCGACGCCCTCTATGATCATATGAGGGAAGCCACGAGATTTTCTTCAATGACCTTCACTCTTTCTGGCACTGCTCCTCTCGTCTCCCTTCAATTTCGTGGGCGTGGGCGA
CCAATGTTGTTTCGTGAATTGTCCTTGACGGATTCGGTAGAGGGAGATGATAATGTTGGTGAAATTGATTATACAACTTTTGTGGCAATTGATTCAGAAGAGTTTAGAAA
CATTATAACAGAGTTTAATCTTTACATAGGTGATGATATA
Protein sequenceShow/hide protein sequence
MFIFRLRGFHSLSDAIFLLTQLTTDHTADLKCSPATFSLTVSNIGHRFSVALRLAPQSFIHHFADGTHRAGISLDALYDHMREATRFSSMTFTLSGTAPLVSLQFRGRGR
PMLFRELSLTDSVEGDDNVGEIDYTTFVAIDSEEFRNIITEFNLYIGDDI