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MS021454 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS021454
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold381:58919..59242
RNA-Seq ExpressionMS021454
SyntenyMS021454
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045259.1 uncharacterized protein E6C27_scaffold10127G00010 [Cucumis melo var. makuwa]2.3e-1649.53Show/hide
Query:  MFSIRVGNIGLLLHATSQLTEIADEVTVKLTPELFSMIASHRSSRFDVVLKLPRNFFTAYSVLLTHTSKISIHAFHTALLDASTSPSMTIHIHDSINRFI
        MF +R+ +   L  ATS+L +IA E  +K TP  FS+IAS+RS RF   L++  + F  Y V   HTS+IS+ +FH ALLD   SPSMTIH+  +I + I
Subjt:  MFSIRVGNIGLLLHATSQLTEIADEVTVKLTPELFSMIASHRSSRFDVVLKLPRNFFTAYSVLLTHTSKISIHAFHTALLDASTSPSMTIHIHDSINRFI

Query:  LRFENSS
        LRFE+SS
Subjt:  LRFENSS

KAE8646595.1 hypothetical protein Csa_005019, partial [Cucumis sativus]7.3e-1549.06Show/hide
Query:  MFSIRVGNIGLLLHATSQLTEIADEVTVKLTPELFSMIASHRSSRFDVVLKLPRNFFTAYSVLLTHTSKISIHAFHTALLDASTSPSMTIHIHDSINRFI
        MF +R+ N     HATS+L  IA E  VK TP  FS+  S++  RF   L +  N F  Y V   HTS+IS+ +FH ALLD   SPSMTIH+  +IN+ I
Subjt:  MFSIRVGNIGLLLHATSQLTEIADEVTVKLTPELFSMIASHRSSRFDVVLKLPRNFFTAYSVLLTHTSKISIHAFHTALLDASTSPSMTIHIHDSINRFI

Query:  LRFENS
        LRFE+S
Subjt:  LRFENS

XP_016903187.1 PREDICTED: uncharacterized protein LOC103502263 [Cucumis melo]1.7e-1649.07Show/hide
Query:  MFSIRVGNIGLLLHATSQLTEIADEVTVKLTPELFSMIASHRSSRFDVVLKLPRNFFTAYSVLLTHTSKISIHAFHTALLDASTSPSMTIHIHDSINRFI
        MF +R+ +   L  ATS+L +IA E  +K TP  FS+IAS+RS RF   L++  + F  Y V   HTS+IS+ +FH ALLD   SPSMTIH+  +I + I
Subjt:  MFSIRVGNIGLLLHATSQLTEIADEVTVKLTPELFSMIASHRSSRFDVVLKLPRNFFTAYSVLLTHTSKISIHAFHTALLDASTSPSMTIHIHDSINRFI

Query:  LRFENSSN
        LRFE+SS+
Subjt:  LRFENSSN

XP_022156149.1 uncharacterized protein LOC111023105 [Momordica charantia]4.5e-4998.15Show/hide
Query:  MFSIRVGNIGLLLHATSQLTEIADEVTVKLTPELFSMIASHRSSRFDVVLKLPRNFFTAYSVLLTHTSKISIHAFHTALLDASTSPSMTIHIHDSINRFI
        MFSIRVGNIGLLLHATSQLTEIADEVTVKLTPELFSMIASHRSSRFDVVLKLPRNFFTAYSVLLTHTS+ISIHAFHTALLDASTSPSMTIHIHDSINRFI
Subjt:  MFSIRVGNIGLLLHATSQLTEIADEVTVKLTPELFSMIASHRSSRFDVVLKLPRNFFTAYSVLLTHTSKISIHAFHTALLDASTSPSMTIHIHDSINRFI

Query:  LRFENSSN
        LRFENSS+
Subjt:  LRFENSSN

XP_031744160.1 uncharacterized protein LOC116404808 [Cucumis sativus]2.5e-1549.07Show/hide
Query:  MFSIRVGNIGLLLHATSQLTEIADEVTVKLTPELFSMIASHRSSRFDVVLKLPRNFFTAYSVLLTHTSKISIHAFHTALLDASTSPSMTIHIHDSINRFI
        MF +R+ N     HATS+L  IA E  VK TP  FS+  S++  RF   L +  N F  Y V   HTS+IS+ +FH ALLD   SPSMTIH+  +IN+ I
Subjt:  MFSIRVGNIGLLLHATSQLTEIADEVTVKLTPELFSMIASHRSSRFDVVLKLPRNFFTAYSVLLTHTSKISIHAFHTALLDASTSPSMTIHIHDSINRFI

Query:  LRFENSSN
        LRFE+SS+
Subjt:  LRFENSSN

TrEMBL top hitse value%identityAlignment
A0A1S3CL88 uncharacterized protein LOC1035022507.9e-1545.87Show/hide
Query:  MFSIRVGNIGLLLHATSQLTEIA-DEVTVKLTPELFSMIASHRSSRFDVVLKLPRNFFTAYSVLLTHTSKISIHAFHTALLDASTSPSMTIHIHDSINRF
        MF +++ N   LL ATS L +I+ D   +K TP  F +IASHRS RF   L+L   +FT +SV   H+SK+S+ +FH A+LD  +  SMTIH+ D  N+ 
Subjt:  MFSIRVGNIGLLLHATSQLTEIA-DEVTVKLTPELFSMIASHRSSRFDVVLKLPRNFFTAYSVLLTHTSKISIHAFHTALLDASTSPSMTIHIHDSINRF

Query:  ILRFENSSN
        ILRF+  S+
Subjt:  ILRFENSSN

A0A1S4E4N8 uncharacterized protein LOC1035022638.4e-1749.07Show/hide
Query:  MFSIRVGNIGLLLHATSQLTEIADEVTVKLTPELFSMIASHRSSRFDVVLKLPRNFFTAYSVLLTHTSKISIHAFHTALLDASTSPSMTIHIHDSINRFI
        MF +R+ +   L  ATS+L +IA E  +K TP  FS+IAS+RS RF   L++  + F  Y V   HTS+IS+ +FH ALLD   SPSMTIH+  +I + I
Subjt:  MFSIRVGNIGLLLHATSQLTEIADEVTVKLTPELFSMIASHRSSRFDVVLKLPRNFFTAYSVLLTHTSKISIHAFHTALLDASTSPSMTIHIHDSINRFI

Query:  LRFENSSN
        LRFE+SS+
Subjt:  LRFENSSN

A0A5D3DZ07 LINE-1 retrotransposable element ORF2 protein7.9e-1545.87Show/hide
Query:  MFSIRVGNIGLLLHATSQLTEIA-DEVTVKLTPELFSMIASHRSSRFDVVLKLPRNFFTAYSVLLTHTSKISIHAFHTALLDASTSPSMTIHIHDSINRF
        MF +++ N   LL ATS L +I+ D   +K TP  F +IASHRS RF   L+L   +FT +SV   H+SK+S+ +FH A+LD  +  SMTIH+ D  N+ 
Subjt:  MFSIRVGNIGLLLHATSQLTEIA-DEVTVKLTPELFSMIASHRSSRFDVVLKLPRNFFTAYSVLLTHTSKISIHAFHTALLDASTSPSMTIHIHDSINRF

Query:  ILRFENSSN
        ILRF+  S+
Subjt:  ILRFENSSN

A0A5D3DZC5 Uncharacterized protein1.1e-1649.53Show/hide
Query:  MFSIRVGNIGLLLHATSQLTEIADEVTVKLTPELFSMIASHRSSRFDVVLKLPRNFFTAYSVLLTHTSKISIHAFHTALLDASTSPSMTIHIHDSINRFI
        MF +R+ +   L  ATS+L +IA E  +K TP  FS+IAS+RS RF   L++  + F  Y V   HTS+IS+ +FH ALLD   SPSMTIH+  +I + I
Subjt:  MFSIRVGNIGLLLHATSQLTEIADEVTVKLTPELFSMIASHRSSRFDVVLKLPRNFFTAYSVLLTHTSKISIHAFHTALLDASTSPSMTIHIHDSINRFI

Query:  LRFENSS
        LRFE+SS
Subjt:  LRFENSS

A0A6J1DSH6 uncharacterized protein LOC1110231052.2e-4998.15Show/hide
Query:  MFSIRVGNIGLLLHATSQLTEIADEVTVKLTPELFSMIASHRSSRFDVVLKLPRNFFTAYSVLLTHTSKISIHAFHTALLDASTSPSMTIHIHDSINRFI
        MFSIRVGNIGLLLHATSQLTEIADEVTVKLTPELFSMIASHRSSRFDVVLKLPRNFFTAYSVLLTHTS+ISIHAFHTALLDASTSPSMTIHIHDSINRFI
Subjt:  MFSIRVGNIGLLLHATSQLTEIADEVTVKLTPELFSMIASHRSSRFDVVLKLPRNFFTAYSVLLTHTSKISIHAFHTALLDASTSPSMTIHIHDSINRFI

Query:  LRFENSSN
        LRFENSS+
Subjt:  LRFENSSN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTCGATCAGGGTTGGGAACATTGGTCTTCTTCTGCACGCCACATCTCAACTCACCGAAATCGCAGACGAGGTGACCGTGAAACTCACCCCGGAGTTGTTCTCGAT
GATCGCCTCGCACCGGTCGTCTCGCTTCGACGTGGTGCTGAAGTTGCCGCGTAATTTCTTCACCGCCTACTCCGTCCTGCTCACTCACACTTCAAAGATTTCCATCCACG
CCTTCCACACTGCTCTCTTGGATGCCTCAACTTCCCCCTCAATGACCATCCATATTCACGATTCCATTAATCGCTTCATCCTTAGATTTGAGAATTCAAGTAAC
mRNA sequenceShow/hide mRNA sequence
ATGTTCTCGATCAGGGTTGGGAACATTGGTCTTCTTCTGCACGCCACATCTCAACTCACCGAAATCGCAGACGAGGTGACCGTGAAACTCACCCCGGAGTTGTTCTCGAT
GATCGCCTCGCACCGGTCGTCTCGCTTCGACGTGGTGCTGAAGTTGCCGCGTAATTTCTTCACCGCCTACTCCGTCCTGCTCACTCACACTTCAAAGATTTCCATCCACG
CCTTCCACACTGCTCTCTTGGATGCCTCAACTTCCCCCTCAATGACCATCCATATTCACGATTCCATTAATCGCTTCATCCTTAGATTTGAGAATTCAAGTAAC
Protein sequenceShow/hide protein sequence
MFSIRVGNIGLLLHATSQLTEIADEVTVKLTPELFSMIASHRSSRFDVVLKLPRNFFTAYSVLLTHTSKISIHAFHTALLDASTSPSMTIHIHDSINRFILRFENSSN