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MS021459 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS021459
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold381:81549..82167
RNA-Seq ExpressionMS021459
SyntenyMS021459
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045262.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.8e-2643.83Show/hide
Query:  MLLIRLHHIAPLLNATSLFTDIADDNVTVKLTPGSFSMIAPHRSSRFVAVLKLPRQFFTSFSDDLNHTSKISLHAFHTALLDASTSSSIAIHLLDSMNRL
        M L++L +  PLL+ATS    I+ DN  +K TP  F +IA HRS RF+A L+L  Q+FT+FS D +H+SK+SL +FH A+LD  + +S+ IHLLD  N++
Subjt:  MLLIRLHHIAPLLNATSLFTDIADDNVTVKLTPGSFSMIAPHRSSRFVAVLKLPRQFFTSFSDDLNHTSKISLHAFHTALLDASTSSSIAIHLLDSMNRL

Query:  ALRFENDSSNDEPEKSHELDLSPPGEDGEQLG--IIDYGRFFGIDYQEFNRIIAEFSIYEDD
         LRF+  SS  +P   HEL LSPP  +  Q+G   +D  ++F +  +   RII +  I+++D
Subjt:  ALRFENDSSNDEPEKSHELDLSPPGEDGEQLG--IIDYGRFFGIDYQEFNRIIAEFSIYEDD

XP_008458682.1 PREDICTED: uncharacterized protein LOC103498010 [Cucumis melo]2.1e-2646.88Show/hide
Query:  MLLIRLHHIAPLLNATSLFTDIADDNVTVKLTPGSFSMIAPHRSSRFVAVLKLPRQFFTSFSDDLNHTSKISLHAFHTALLDASTSSSIAIHLLDSMNRL
        M L+RL    PL++ATSL   +A D   VK TP    +I  +RS +FVA L+L R+ FT+FS D N +SK+SL  FH A+LD  + SS+ IHLLD+ N++
Subjt:  MLLIRLHHIAPLLNATSLFTDIADDNVTVKLTPGSFSMIAPHRSSRFVAVLKLPRQFFTSFSDDLNHTSKISLHAFHTALLDASTSSSIAIHLLDSMNRL

Query:  ALRFENDSSNDEPEKSHELDLSPPGEDGEQLGIIDYGRFFGIDYQEFNRIIAEFSIYEDD
         LRFE   S+D P   HEL LSPP    E LG ++YG FF +  +E  RII E  ++  D
Subjt:  ALRFENDSSNDEPEKSHELDLSPPGEDGEQLGIIDYGRFFGIDYQEFNRIIAEFSIYEDD

XP_008464344.1 PREDICTED: uncharacterized protein LOC103502250 [Cucumis melo]2.8e-2643.83Show/hide
Query:  MLLIRLHHIAPLLNATSLFTDIADDNVTVKLTPGSFSMIAPHRSSRFVAVLKLPRQFFTSFSDDLNHTSKISLHAFHTALLDASTSSSIAIHLLDSMNRL
        M L++L +  PLL+ATS    I+ DN  +K TP  F +IA HRS RF+A L+L  Q+FT+FS D +H+SK+SL +FH A+LD  + +S+ IHLLD  N++
Subjt:  MLLIRLHHIAPLLNATSLFTDIADDNVTVKLTPGSFSMIAPHRSSRFVAVLKLPRQFFTSFSDDLNHTSKISLHAFHTALLDASTSSSIAIHLLDSMNRL

Query:  ALRFENDSSNDEPEKSHELDLSPPGEDGEQLG--IIDYGRFFGIDYQEFNRIIAEFSIYEDD
         LRF+  SS  +P   HEL LSPP  +  Q+G   +D  ++F +  +   RII +  I+++D
Subjt:  ALRFENDSSNDEPEKSHELDLSPPGEDGEQLG--IIDYGRFFGIDYQEFNRIIAEFSIYEDD

XP_022156149.1 uncharacterized protein LOC111023105 [Momordica charantia]4.9e-3960.74Show/hide
Query:  MLLIRLHHIAPLLNATSLFTDIADDNVTVKLTPGSFSMIAPHRSSRFVAVLKLPRQFFTSFSDDLNHTSKISLHAFHTALLDASTSSSIAIHLLDSMNRL
        M  IR+ +I  LL+ATS  T+IAD+ VTVKLTP  FSMIA HRSSRF  VLKLPR FFT++S  L HTS+IS+HAFHTALLDASTS S+ IH+ DS+NR 
Subjt:  MLLIRLHHIAPLLNATSLFTDIADDNVTVKLTPGSFSMIAPHRSSRFVAVLKLPRQFFTSFSDDLNHTSKISLHAFHTALLDASTSSSIAIHLLDSMNRL

Query:  ALRFENDSSNDEPEKSHELDLS---PPGEDGEQLGIIDYGRFFGIDYQEFNRIIAEFSIYEDD
         LRFEN  S+ + EK HEL  S      +D +  G +DYGRFFGI YQ+F +IIA FSI++D+
Subjt:  ALRFENDSSNDEPEKSHELDLS---PPGEDGEQLGIIDYGRFFGIDYQEFNRIIAEFSIYEDD

XP_031743987.1 uncharacterized protein LOC116404759 [Cucumis sativus]8.7e-2845.68Show/hide
Query:  MLLIRLHHIAPLLNATSLFTDIADDNVTVKLTPGSFSMIAPHRSSRFVAVLKLPRQFFTSFSDDLNHTSKISLHAFHTALLDASTSSSIAIHLLDSMNRL
        M L++L +  PLL+ATS F  I+ D+  VK TP  F +I+ HRS RF+A L+L  Q+FTSFS D +H+SK+SL +FH A+LD  + +S+ IHLLD  N++
Subjt:  MLLIRLHHIAPLLNATSLFTDIADDNVTVKLTPGSFSMIAPHRSSRFVAVLKLPRQFFTSFSDDLNHTSKISLHAFHTALLDASTSSSIAIHLLDSMNRL

Query:  ALRFENDSSNDEPEKSHELDLSPPGEDGEQLG--IIDYGRFFGIDYQEFNRIIAEFSIYEDD
         LRF+  SS  +P   HEL LSPP  +  Q+G   +D G++F +  +   RII E  I+++D
Subjt:  ALRFENDSSNDEPEKSHELDLSPPGEDGEQLG--IIDYGRFFGIDYQEFNRIIAEFSIYEDD

TrEMBL top hitse value%identityAlignment
A0A0A0K902 Uncharacterized protein1.9e-2845.45Show/hide
Query:  MLLIRLHHIAPLLNATSLFTDIADDNVTVKLTPGSFSMIAPHRSSRFVAVLKLPRQFFTSFSDDLNHTSKISLHAFHTALLDASTSSSIAIHLLDSMNRL
        M L++L +  PLL+ATS F  I+ D+  VK TP  F +I+ HRS RF+A L+L  Q+FTSFS D +H+SK+SL +FH A+LD  + +S+ IHLLD  N++
Subjt:  MLLIRLHHIAPLLNATSLFTDIADDNVTVKLTPGSFSMIAPHRSSRFVAVLKLPRQFFTSFSDDLNHTSKISLHAFHTALLDASTSSSIAIHLLDSMNRL

Query:  ALRFENDSSNDEPEKSHELDLSPPGEDGEQLG--IIDYGRFFGIDYQEFNRIIAEFSIYEDDIRN
         LRF+  SS  +P   HEL LSPP  +  Q+G   +D G++F +  +   RII E  I+++D  N
Subjt:  ALRFENDSSNDEPEKSHELDLSPPGEDGEQLG--IIDYGRFFGIDYQEFNRIIAEFSIYEDDIRN

A0A1S3C8J1 uncharacterized protein LOC1034980101.0e-2646.88Show/hide
Query:  MLLIRLHHIAPLLNATSLFTDIADDNVTVKLTPGSFSMIAPHRSSRFVAVLKLPRQFFTSFSDDLNHTSKISLHAFHTALLDASTSSSIAIHLLDSMNRL
        M L+RL    PL++ATSL   +A D   VK TP    +I  +RS +FVA L+L R+ FT+FS D N +SK+SL  FH A+LD  + SS+ IHLLD+ N++
Subjt:  MLLIRLHHIAPLLNATSLFTDIADDNVTVKLTPGSFSMIAPHRSSRFVAVLKLPRQFFTSFSDDLNHTSKISLHAFHTALLDASTSSSIAIHLLDSMNRL

Query:  ALRFENDSSNDEPEKSHELDLSPPGEDGEQLGIIDYGRFFGIDYQEFNRIIAEFSIYEDD
         LRFE   S+D P   HEL LSPP    E LG ++YG FF +  +E  RII E  ++  D
Subjt:  ALRFENDSSNDEPEKSHELDLSPPGEDGEQLGIIDYGRFFGIDYQEFNRIIAEFSIYEDD

A0A1S3CL88 uncharacterized protein LOC1035022501.4e-2643.83Show/hide
Query:  MLLIRLHHIAPLLNATSLFTDIADDNVTVKLTPGSFSMIAPHRSSRFVAVLKLPRQFFTSFSDDLNHTSKISLHAFHTALLDASTSSSIAIHLLDSMNRL
        M L++L +  PLL+ATS    I+ DN  +K TP  F +IA HRS RF+A L+L  Q+FT+FS D +H+SK+SL +FH A+LD  + +S+ IHLLD  N++
Subjt:  MLLIRLHHIAPLLNATSLFTDIADDNVTVKLTPGSFSMIAPHRSSRFVAVLKLPRQFFTSFSDDLNHTSKISLHAFHTALLDASTSSSIAIHLLDSMNRL

Query:  ALRFENDSSNDEPEKSHELDLSPPGEDGEQLG--IIDYGRFFGIDYQEFNRIIAEFSIYEDD
         LRF+  SS  +P   HEL LSPP  +  Q+G   +D  ++F +  +   RII +  I+++D
Subjt:  ALRFENDSSNDEPEKSHELDLSPPGEDGEQLG--IIDYGRFFGIDYQEFNRIIAEFSIYEDD

A0A5D3DZ07 LINE-1 retrotransposable element ORF2 protein1.4e-2643.83Show/hide
Query:  MLLIRLHHIAPLLNATSLFTDIADDNVTVKLTPGSFSMIAPHRSSRFVAVLKLPRQFFTSFSDDLNHTSKISLHAFHTALLDASTSSSIAIHLLDSMNRL
        M L++L +  PLL+ATS    I+ DN  +K TP  F +IA HRS RF+A L+L  Q+FT+FS D +H+SK+SL +FH A+LD  + +S+ IHLLD  N++
Subjt:  MLLIRLHHIAPLLNATSLFTDIADDNVTVKLTPGSFSMIAPHRSSRFVAVLKLPRQFFTSFSDDLNHTSKISLHAFHTALLDASTSSSIAIHLLDSMNRL

Query:  ALRFENDSSNDEPEKSHELDLSPPGEDGEQLG--IIDYGRFFGIDYQEFNRIIAEFSIYEDD
         LRF+  SS  +P   HEL LSPP  +  Q+G   +D  ++F +  +   RII +  I+++D
Subjt:  ALRFENDSSNDEPEKSHELDLSPPGEDGEQLG--IIDYGRFFGIDYQEFNRIIAEFSIYEDD

A0A6J1DSH6 uncharacterized protein LOC1110231052.4e-3960.74Show/hide
Query:  MLLIRLHHIAPLLNATSLFTDIADDNVTVKLTPGSFSMIAPHRSSRFVAVLKLPRQFFTSFSDDLNHTSKISLHAFHTALLDASTSSSIAIHLLDSMNRL
        M  IR+ +I  LL+ATS  T+IAD+ VTVKLTP  FSMIA HRSSRF  VLKLPR FFT++S  L HTS+IS+HAFHTALLDASTS S+ IH+ DS+NR 
Subjt:  MLLIRLHHIAPLLNATSLFTDIADDNVTVKLTPGSFSMIAPHRSSRFVAVLKLPRQFFTSFSDDLNHTSKISLHAFHTALLDASTSSSIAIHLLDSMNRL

Query:  ALRFENDSSNDEPEKSHELDLS---PPGEDGEQLGIIDYGRFFGIDYQEFNRIIAEFSIYEDD
         LRFEN  S+ + EK HEL  S      +D +  G +DYGRFFGI YQ+F +IIA FSI++D+
Subjt:  ALRFENDSSNDEPEKSHELDLS---PPGEDGEQLGIIDYGRFFGIDYQEFNRIIAEFSIYEDD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCTTGATCAGGCTTCACCACATTGCTCCTCTTCTCAACGCCACCTCCCTCTTCACCGATATCGCCGACGACAACGTCACCGTGAAACTCACCCCGGGGTCGTTCTC
GATGATTGCCCCGCACCGTTCCTCCCGCTTCGTCGCCGTGCTGAAATTGCCGCGCCAATTCTTCACCTCCTTCTCCGACGACCTCAATCACACTTCAAAGATTTCCCTCC
ACGCCTTCCACACTGCTCTCTTGGATGCCTCAACTTCCTCCTCAATCGCCATCCATCTTCTTGATTCCATGAATCGCTTGGCCCTTAGATTCGAGAATGATTCTTCAAAT
GATGAGCCAGAGAAAAGCCATGAATTGGATCTGTCACCTCCGGGAGAGGATGGAGAGCAATTAGGCATAATTGACTATGGAAGATTTTTTGGGATTGATTATCAAGAATT
CAATCGCATTATAGCGGAATTTTCTATCTACGAAGATGACATACGTAAT
mRNA sequenceShow/hide mRNA sequence
ATGCTCTTGATCAGGCTTCACCACATTGCTCCTCTTCTCAACGCCACCTCCCTCTTCACCGATATCGCCGACGACAACGTCACCGTGAAACTCACCCCGGGGTCGTTCTC
GATGATTGCCCCGCACCGTTCCTCCCGCTTCGTCGCCGTGCTGAAATTGCCGCGCCAATTCTTCACCTCCTTCTCCGACGACCTCAATCACACTTCAAAGATTTCCCTCC
ACGCCTTCCACACTGCTCTCTTGGATGCCTCAACTTCCTCCTCAATCGCCATCCATCTTCTTGATTCCATGAATCGCTTGGCCCTTAGATTCGAGAATGATTCTTCAAAT
GATGAGCCAGAGAAAAGCCATGAATTGGATCTGTCACCTCCGGGAGAGGATGGAGAGCAATTAGGCATAATTGACTATGGAAGATTTTTTGGGATTGATTATCAAGAATT
CAATCGCATTATAGCGGAATTTTCTATCTACGAAGATGACATACGTAAT
Protein sequenceShow/hide protein sequence
MLLIRLHHIAPLLNATSLFTDIADDNVTVKLTPGSFSMIAPHRSSRFVAVLKLPRQFFTSFSDDLNHTSKISLHAFHTALLDASTSSSIAIHLLDSMNRLALRFENDSSN
DEPEKSHELDLSPPGEDGEQLGIIDYGRFFGIDYQEFNRIIAEFSIYEDDIRN