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MS021460 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS021460
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold381:88466..89315
RNA-Seq ExpressionMS021460
SyntenyMS021460
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008458682.1 PREDICTED: uncharacterized protein LOC103498010 [Cucumis melo]3.9e-3545.05Show/hide
Query:  MILIRLDHIAPFLNATSLLTQIADDADINLSPLLFTIIATHRSSRFVVVLKKPRRFFASYSVDQIHGSKISLHAFHNALLDGSTSSSMTIHLLENINRMI
        M L+RL+   P ++ATSLL Q+A DAD+  +PL+  II ++RS +FV  L+  RR F ++SVD    SK+SL  FH+A+LDG + SSMTIHLL+  N+M+
Subjt:  MILIRLDHIAPFLNATSLLTQIADDADINLSPLLFTIIATHRSSRFVVVLKKPRRFFASYSVDQIHGSKISLHAFHNALLDGSTSSSMTIHLLENINRMI

Query:  LRFENSKYE-PEKRHELDLSPPTEEEVVRKIDYGRFFSIHLENFRQIITNFSVYQDEPIRITLTISQVKFSVANEEIVFIKE
        LRFE   ++ P   HEL LSPP + E + +++YG FF++     R+II    ++  + + +T+T SQVKFS+ ++EI+  KE
Subjt:  LRFENSKYE-PEKRHELDLSPPTEEEVVRKIDYGRFFSIHLENFRQIITNFSVYQDEPIRITLTISQVKFSVANEEIVFIKE

XP_016903187.1 PREDICTED: uncharacterized protein LOC103502263 [Cucumis melo]2.9e-3850.28Show/hide
Query:  MILIRLDHIAPFLNATSLLTQIADDADINLSPLLFTIIATHRSSRFVVVLKKPRRFFASYSVDQIHGSKISLHAFHNALLDGSTSSSMTIHLLENINRMI
        M L+RL    P  +ATS L QIA +ADI  +PL F+IIA++RS RFV  L+     F +Y VD  H S+ISL +FH+ALLDG  S SMTIHLL NI ++I
Subjt:  MILIRLDHIAPFLNATSLLTQIADDADINLSPLLFTIIATHRSSRFVVVLKKPRRFFASYSVDQIHGSKISLHAFHNALLDGSTSSSMTIHLLENINRMI

Query:  LRFENSKYEPEKRHELDLSPPTEEEVVRKIDYGRFFSIHLENFRQIITNFSVYQDEPIRITLTISQVKFSVANEEIVFIKE
        LRFE+S + P+  HEL L+ P++EE + ++DY +FFSI  ++ R++I N  ++  + I +T T SQVKFS+A++EIV  KE
Subjt:  LRFENSKYEPEKRHELDLSPPTEEEVVRKIDYGRFFSIHLENFRQIITNFSVYQDEPIRITLTISQVKFSVANEEIVFIKE

XP_022145570.1 uncharacterized protein LOC111014988 [Momordica charantia]1.5e-3451.38Show/hide
Query:  MILIRLDHIAPFLNATSLLTQIADDADINLSPLLFTIIATHRSSRFVVVLKKPRRFFASYSVDQIHGSKISLHAFHNALLDGSTSSSMTIHLLENINRMI
        M LIRL  IAP  +A   LT+IA  AD+  SP  F II +  S  F+  L+    FF S++VD  H S+I L + H+ L+DG    +MT HLLEN NR++
Subjt:  MILIRLDHIAPFLNATSLLTQIADDADINLSPLLFTIIATHRSSRFVVVLKKPRRFFASYSVDQIHGSKISLHAFHNALLDGSTSSSMTIHLLENINRMI

Query:  LRFENSKYEPEKRHELDLSPPTEEEVVRKIDYGRFFSIHLENFRQIITNFSVYQDEPIRITLTISQVKFSVANEEIVFIKE
        LRFENS+  P  R ELDLS P+EEE V +IDYG   SI  + FR I+T  S Y +  I  TLT SQVKFSVANEEI+  KE
Subjt:  LRFENSKYEPEKRHELDLSPPTEEEVVRKIDYGRFFSIHLENFRQIITNFSVYQDEPIRITLTISQVKFSVANEEIVFIKE

XP_022156149.1 uncharacterized protein LOC111023105 [Momordica charantia]3.7e-4153.51Show/hide
Query:  MILIRLDHIAPFLNATSLLTQIADDADINLSPLLFTIIATHRSSRFVVVLKKPRRFFASYSVDQIHGSKISLHAFHNALLDGSTSSSMTIHLLENINRMI
        M  IR+ +I   L+ATS LT+IAD+  + L+P LF++IA+HRSSRF VVLK PR FF +YSV   H S+IS+HAFH ALLD STS SMTIH+ ++INR I
Subjt:  MILIRLDHIAPFLNATSLLTQIADDADINLSPLLFTIIATHRSSRFVVVLKKPRRFFASYSVDQIHGSKISLHAFHNALLDGSTSSSMTIHLLENINRMI

Query:  LRFENSKYEPEKRHELDLS----PPTEEEVVRKIDYGRFFSIHLENFRQIITNFSVYQDEPIRITLTISQVKFSVANEEIVFIKE
        LRFENS ++ EKRHEL  S       +E+   K+DYGRFF IH ++F QII  FS++ DE + +T T S+V FS     +   KE
Subjt:  LRFENSKYEPEKRHELDLS----PPTEEEVVRKIDYGRFFSIHLENFRQIITNFSVYQDEPIRITLTISQVKFSVANEEIVFIKE

XP_031744160.1 uncharacterized protein LOC116404808 [Cucumis sativus]7.1e-3749.72Show/hide
Query:  MILIRLDHIAPFLNATSLLTQIADDADINLSPLLFTIIATHRSSRFVVVLKKPRRFFASYSVDQIHGSKISLHAFHNALLDGSTSSSMTIHLLENINRMI
        M L+RL +  PF +ATS L  IA +AD+  +PL F+I  +++  RFV  L      F +Y VD  H S+ISL +FH+ALLDG  S SMTIHLL NIN+MI
Subjt:  MILIRLDHIAPFLNATSLLTQIADDADINLSPLLFTIIATHRSSRFVVVLKKPRRFFASYSVDQIHGSKISLHAFHNALLDGSTSSSMTIHLLENINRMI

Query:  LRFENSKYEPEKRHELDLSPPTEEEVVRKIDYGRFFSIHLENFRQIITNFSVYQDEPIRITLTISQVKFSVANEEIVFIKE
        LRFE+S + P+ RHEL L  P++EE + +IDY +FFSI  +  R++I N  ++  + I +T T SQVKFS+A++EIV  KE
Subjt:  LRFENSKYEPEKRHELDLSPPTEEEVVRKIDYGRFFSIHLENFRQIITNFSVYQDEPIRITLTISQVKFSVANEEIVFIKE

TrEMBL top hitse value%identityAlignment
A0A1S3C8J1 uncharacterized protein LOC1034980101.9e-3545.05Show/hide
Query:  MILIRLDHIAPFLNATSLLTQIADDADINLSPLLFTIIATHRSSRFVVVLKKPRRFFASYSVDQIHGSKISLHAFHNALLDGSTSSSMTIHLLENINRMI
        M L+RL+   P ++ATSLL Q+A DAD+  +PL+  II ++RS +FV  L+  RR F ++SVD    SK+SL  FH+A+LDG + SSMTIHLL+  N+M+
Subjt:  MILIRLDHIAPFLNATSLLTQIADDADINLSPLLFTIIATHRSSRFVVVLKKPRRFFASYSVDQIHGSKISLHAFHNALLDGSTSSSMTIHLLENINRMI

Query:  LRFENSKYE-PEKRHELDLSPPTEEEVVRKIDYGRFFSIHLENFRQIITNFSVYQDEPIRITLTISQVKFSVANEEIVFIKE
        LRFE   ++ P   HEL LSPP + E + +++YG FF++     R+II    ++  + + +T+T SQVKFS+ ++EI+  KE
Subjt:  LRFENSKYE-PEKRHELDLSPPTEEEVVRKIDYGRFFSIHLENFRQIITNFSVYQDEPIRITLTISQVKFSVANEEIVFIKE

A0A1S4E4N8 uncharacterized protein LOC1035022631.4e-3850.28Show/hide
Query:  MILIRLDHIAPFLNATSLLTQIADDADINLSPLLFTIIATHRSSRFVVVLKKPRRFFASYSVDQIHGSKISLHAFHNALLDGSTSSSMTIHLLENINRMI
        M L+RL    P  +ATS L QIA +ADI  +PL F+IIA++RS RFV  L+     F +Y VD  H S+ISL +FH+ALLDG  S SMTIHLL NI ++I
Subjt:  MILIRLDHIAPFLNATSLLTQIADDADINLSPLLFTIIATHRSSRFVVVLKKPRRFFASYSVDQIHGSKISLHAFHNALLDGSTSSSMTIHLLENINRMI

Query:  LRFENSKYEPEKRHELDLSPPTEEEVVRKIDYGRFFSIHLENFRQIITNFSVYQDEPIRITLTISQVKFSVANEEIVFIKE
        LRFE+S + P+  HEL L+ P++EE + ++DY +FFSI  ++ R++I N  ++  + I +T T SQVKFS+A++EIV  KE
Subjt:  LRFENSKYEPEKRHELDLSPPTEEEVVRKIDYGRFFSIHLENFRQIITNFSVYQDEPIRITLTISQVKFSVANEEIVFIKE

A0A6J1CUU8 uncharacterized protein LOC1110149887.2e-3551.38Show/hide
Query:  MILIRLDHIAPFLNATSLLTQIADDADINLSPLLFTIIATHRSSRFVVVLKKPRRFFASYSVDQIHGSKISLHAFHNALLDGSTSSSMTIHLLENINRMI
        M LIRL  IAP  +A   LT+IA  AD+  SP  F II +  S  F+  L+    FF S++VD  H S+I L + H+ L+DG    +MT HLLEN NR++
Subjt:  MILIRLDHIAPFLNATSLLTQIADDADINLSPLLFTIIATHRSSRFVVVLKKPRRFFASYSVDQIHGSKISLHAFHNALLDGSTSSSMTIHLLENINRMI

Query:  LRFENSKYEPEKRHELDLSPPTEEEVVRKIDYGRFFSIHLENFRQIITNFSVYQDEPIRITLTISQVKFSVANEEIVFIKE
        LRFENS+  P  R ELDLS P+EEE V +IDYG   SI  + FR I+T  S Y +  I  TLT SQVKFSVANEEI+  KE
Subjt:  LRFENSKYEPEKRHELDLSPPTEEEVVRKIDYGRFFSIHLENFRQIITNFSVYQDEPIRITLTISQVKFSVANEEIVFIKE

A0A6J1DSH6 uncharacterized protein LOC1110231051.8e-4153.51Show/hide
Query:  MILIRLDHIAPFLNATSLLTQIADDADINLSPLLFTIIATHRSSRFVVVLKKPRRFFASYSVDQIHGSKISLHAFHNALLDGSTSSSMTIHLLENINRMI
        M  IR+ +I   L+ATS LT+IAD+  + L+P LF++IA+HRSSRF VVLK PR FF +YSV   H S+IS+HAFH ALLD STS SMTIH+ ++INR I
Subjt:  MILIRLDHIAPFLNATSLLTQIADDADINLSPLLFTIIATHRSSRFVVVLKKPRRFFASYSVDQIHGSKISLHAFHNALLDGSTSSSMTIHLLENINRMI

Query:  LRFENSKYEPEKRHELDLS----PPTEEEVVRKIDYGRFFSIHLENFRQIITNFSVYQDEPIRITLTISQVKFSVANEEIVFIKE
        LRFENS ++ EKRHEL  S       +E+   K+DYGRFF IH ++F QII  FS++ DE + +T T S+V FS     +   KE
Subjt:  LRFENSKYEPEKRHELDLS----PPTEEEVVRKIDYGRFFSIHLENFRQIITNFSVYQDEPIRITLTISQVKFSVANEEIVFIKE

A0A6J1KZ05 uncharacterized protein LOC1114988874.8e-3143.65Show/hide
Query:  MILIRLDHIAPFLNATSLLTQIADDADINLSPLLFTIIATHRSSRFVVVLKKPRRFFASYSVDQIHGSKISLHAFHNALLDGSTSSSMTIHLLENINRMI
        M L+RL H  P   ATSLL QI+++AD+  S   F++I ++ S RFV   +   RFFA+YSVD+ H S++SL +F++A+ DG   SSMTIH  E  +RM+
Subjt:  MILIRLDHIAPFLNATSLLTQIADDADINLSPLLFTIIATHRSSRFVVVLKKPRRFFASYSVDQIHGSKISLHAFHNALLDGSTSSSMTIHLLENINRMI

Query:  LRFENSKYEPEKRHELDLSPPTEEEVVRKIDYGRFFSIHLENFRQIITNFSVYQDEPIRITLTISQVKFSVANEEIVFIKE
        L+FE+S +   K H +    P++EE + +I + RFFSI  ++FR IIT    + +  I ++LT S+VKF  A+EE +  KE
Subjt:  LRFENSKYEPEKRHELDLSPPTEEEVVRKIDYGRFFSIHLENFRQIITNFSVYQDEPIRITLTISQVKFSVANEEIVFIKE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCTTGATCAGGCTTGATCACATTGCTCCTTTCCTGAACGCCACCTCCCTCCTCACTCAAATCGCCGACGACGCCGACATCAATCTCTCCCCGTTGCTGTTCACGAT
AATCGCCACGCACCGTTCCTCCCGCTTCGTCGTGGTGCTGAAGAAACCGCGTCGATTCTTCGCGTCCTACTCCGTCGATCAGATTCACGGTTCAAAGATTTCCCTCCACG
CCTTCCACAATGCTCTCTTGGATGGCTCGACTTCCTCCTCAATGACCATCCATCTCCTAGAAAACATTAATCGCATGATCCTTAGATTTGAGAATTCAAAGTATGAGCCT
GAGAAGCGCCATGAATTGGATTTGTCACCTCCAACAGAGGAGGAGGTGGTGCGCAAAATTGACTATGGAAGATTTTTTTCTATTCATTTAGAAAATTTCAGACAAATTAT
AACCAATTTTTCTGTCTACCAAGATGAACCAATTCGTATCACACTTACGATTTCACAAGTCAAATTCTCTGTTGCAAATGAGGAGATTGTTTTTATCAAGGAGGTATATA
TTGTTGAAATGATTTCTTGGAGTAATTTTTTT
mRNA sequenceShow/hide mRNA sequence
ATGATCTTGATCAGGCTTGATCACATTGCTCCTTTCCTGAACGCCACCTCCCTCCTCACTCAAATCGCCGACGACGCCGACATCAATCTCTCCCCGTTGCTGTTCACGAT
AATCGCCACGCACCGTTCCTCCCGCTTCGTCGTGGTGCTGAAGAAACCGCGTCGATTCTTCGCGTCCTACTCCGTCGATCAGATTCACGGTTCAAAGATTTCCCTCCACG
CCTTCCACAATGCTCTCTTGGATGGCTCGACTTCCTCCTCAATGACCATCCATCTCCTAGAAAACATTAATCGCATGATCCTTAGATTTGAGAATTCAAAGTATGAGCCT
GAGAAGCGCCATGAATTGGATTTGTCACCTCCAACAGAGGAGGAGGTGGTGCGCAAAATTGACTATGGAAGATTTTTTTCTATTCATTTAGAAAATTTCAGACAAATTAT
AACCAATTTTTCTGTCTACCAAGATGAACCAATTCGTATCACACTTACGATTTCACAAGTCAAATTCTCTGTTGCAAATGAGGAGATTGTTTTTATCAAGGAGGTATATA
TTGTTGAAATGATTTCTTGGAGTAATTTTTTT
Protein sequenceShow/hide protein sequence
MILIRLDHIAPFLNATSLLTQIADDADINLSPLLFTIIATHRSSRFVVVLKKPRRFFASYSVDQIHGSKISLHAFHNALLDGSTSSSMTIHLLENINRMILRFENSKYEP
EKRHELDLSPPTEEEVVRKIDYGRFFSIHLENFRQIITNFSVYQDEPIRITLTISQVKFSVANEEIVFIKEVYIVEMISWSNFF