CuGenDBv2

Gene ID	MS021564
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	40S ribosomal protein S18
Genome location	scaffold108:85465..87255
RNA-Seq Expression	MS021564
Synteny	MS021564
Gene Ontology terms	GO:0006412 - translation (biological process) GO:2000028 - regulation of photoperiodism, flowering (biological process) GO:0005829 - cytosol (cellular component) GO:0015935 - small ribosomal subunit (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR001892 - Ribosomal protein S13 IPR010979 - Ribosomal protein S13-like, H2TH IPR027437 - 30s ribosomal protein S13, C-terminal

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0046827.1 40S ribosomal protein S18 isoform X1 [Cucumis melo var. makuwa]

2.9e-57

99.15

Show/hide

Query:  SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSN
        SLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSN
Subjt:  SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSN

Query:  ALDMKLRDDLERLKKIR
        ALDMKLRDDLERLKKIR
Subjt:  ALDMKLRDDLERLKKIR

KAA0059528.1 40S ribosomal protein S18 isoform X1 [Cucumis melo var. makuwa]

2.9e-57

99.15

Show/hide

Query:  SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSN
        SLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSN
Subjt:  SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSN

Query:  ALDMKLRDDLERLKKIR
        ALDMKLRDDLERLKKIR
Subjt:  ALDMKLRDDLERLKKIR

XP_004139687.1 40S ribosomal protein S18 [Cucumis sativus]

2.9e-57

99.15

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Query:  SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSN
        SLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSN
Subjt:  SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSN

Query:  ALDMKLRDDLERLKKIR
        ALDMKLRDDLERLKKIR
Subjt:  ALDMKLRDDLERLKKIR

XP_012073942.1 40S ribosomal protein S18 [Jatropha curcas]

1.7e-57

99.15

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Query:  SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSN
        SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMV+VANPRQFKIPDWFLNRQKDYKDGKYSQVVSN
Subjt:  SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSN

Query:  ALDMKLRDDLERLKKIR
        ALDMKLRDDLERLKKIR
Subjt:  ALDMKLRDDLERLKKIR

XP_022133825.1 40S ribosomal protein S18 [Momordica charantia]

1.3e-57

100

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Query:  SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSN
        SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSN
Subjt:  SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSN

Query:  ALDMKLRDDLERLKKIR
        ALDMKLRDDLERLKKIR
Subjt:  ALDMKLRDDLERLKKIR

TrEMBL top hits

e value

%identity

Alignment

A0A067KXH7 Uncharacterized protein

8.2e-58

99.15

Show/hide

Query:  SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSN
        SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMV+VANPRQFKIPDWFLNRQKDYKDGKYSQVVSN
Subjt:  SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSN

Query:  ALDMKLRDDLERLKKIR
        ALDMKLRDDLERLKKIR
Subjt:  ALDMKLRDDLERLKKIR

A0A0A0K7Z7 Uncharacterized protein

1.4e-57

99.15

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Query:  SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSN
        SLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSN
Subjt:  SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSN

Query:  ALDMKLRDDLERLKKIR
        ALDMKLRDDLERLKKIR
Subjt:  ALDMKLRDDLERLKKIR

A0A1Q3BYA9 Ribosomal_S13 domain-containing protein

8.2e-58

99.15

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Query:  SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSN
        SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMV+VANPRQFKIPDWFLNRQKDYKDGKYSQVVSN
Subjt:  SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSN

Query:  ALDMKLRDDLERLKKIR
        ALDMKLRDDLERLKKIR
Subjt:  ALDMKLRDDLERLKKIR

A0A1S3CH47 40S ribosomal protein S18

1.4e-57

99.15

Show/hide

Query:  SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSN
        SLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSN
Subjt:  SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSN

Query:  ALDMKLRDDLERLKKIR
        ALDMKLRDDLERLKKIR
Subjt:  ALDMKLRDDLERLKKIR

A0A6J1BWC2 40S ribosomal protein S18

6.2e-58

100

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Query:  SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSN
        SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSN
Subjt:  SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSN

Query:  ALDMKLRDDLERLKKIR
        ALDMKLRDDLERLKKIR
Subjt:  ALDMKLRDDLERLKKIR

SwissProt top hits

e value

%identity

Alignment

P34788 40S ribosomal protein S18

1.6e-58

95.73

Show/hide

Query:  SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSN
        SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRR ANIVCKKADVDMNKRAGEL+AAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVSN
Subjt:  SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSN

Query:  ALDMKLRDDLERLKKIR
        ALDMKLRDDLERLKKIR
Subjt:  ALDMKLRDDLERLKKIR

Q8ISP0 40S ribosomal protein S18

1.1e-46

73.5

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Query:  SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSN
        SLV  E+FQHILRV+NTN+DG++KIMFALTSIKG+GRR++NIVCKKAD+D++KRAGEL+  E++ L+ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N
Subjt:  SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSN

Query:  ALDMKLRDDLERLKKIR
        +LD KLR+DLERLKKIR
Subjt:  ALDMKLRDDLERLKKIR

Q8IT98 40S ribosomal protein S18

5.3e-46

71.79

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Query:  SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSN
        +L+  E+FQHILRV+NTN+DGK+KIMFA+T+IKG+GRR+AN+VCKKADVD+ KRAGEL+  E++ ++ +++NPRQ+KIP+WFLNRQKD KDGKYSQV+SN
Subjt:  SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSN

Query:  ALDMKLRDDLERLKKIR
        ALD KLR+DLERLKKIR
Subjt:  ALDMKLRDDLERLKKIR

Q8JGS9 40S ribosomal protein S18

2.2e-44

70.09

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Query:  SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSN
        SLV  E+FQHILRVLNTN+DG++KI FA+T+IKG+GRR+A++V +KAD+D+NKRAGELT  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N
Subjt:  SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSN

Query:  ALDMKLRDDLERLKKIR
         LD KLR+DLERLKKIR
Subjt:  ALDMKLRDDLERLKKIR

Q90YQ5 40S ribosomal protein S18

8.4e-44

69.23

Show/hide

Query:  SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSN
        SLV  E+FQHILRVLNTN+DG++KI FA+T+IKG+GRR+A++V +KAD+D++KRAGELT  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N
Subjt:  SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSN

Query:  ALDMKLRDDLERLKKIR
         LD KLR+DLERLKKIR
Subjt:  ALDMKLRDDLERLKKIR

Arabidopsis top hits

e value

%identity

Alignment

AT1G22780.1 Ribosomal protein S13/S18 family

1.1e-59

95.73

Show/hide

Query:  SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSN
        SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRR ANIVCKKADVDMNKRAGEL+AAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVSN
Subjt:  SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSN

Query:  ALDMKLRDDLERLKKIR
        ALDMKLRDDLERLKKIR
Subjt:  ALDMKLRDDLERLKKIR

AT1G34030.1 Ribosomal protein S13/S18 family

1.1e-59

95.73

Show/hide

Query:  SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSN
        SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRR ANIVCKKADVDMNKRAGEL+AAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVSN
Subjt:  SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSN

Query:  ALDMKLRDDLERLKKIR
        ALDMKLRDDLERLKKIR
Subjt:  ALDMKLRDDLERLKKIR

AT4G09800.1 S18 ribosomal protein

1.1e-59

95.73

Show/hide

Query:  SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSN
        SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRR ANIVCKKADVDMNKRAGEL+AAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVSN
Subjt:  SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSN

Query:  ALDMKLRDDLERLKKIR
        ALDMKLRDDLERLKKIR
Subjt:  ALDMKLRDDLERLKKIR

Sequences

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CDS sequence

Show/hide CDS sequence

TCGCTGGTAGCGAACGAGGAATTTCAGCACATTCTGCGTGTGCTGAACACGAACGTGGATGGGAAGCAGAAGATTATGTTTGCTCTTACTTCAATCAAAGGTATTGGAAG
GCGTTTCGCTAATATCGTTTGCAAGAAGGCCGATGTCGACATGAACAAGAGGGCTGGTGAATTGACTGCTGCTGAGTTGGACAATCTCATGGTGGTTGTTGCCAATCCAC
GTCAATTTAAAATTCCTGACTGGTTTTTGAATCGGCAAAAAGACTACAAGGACGGGAAATATTCTCAAGTGGTTTCAAATGCATTGGACATGAAGTTGAGAGATGATTTG
GAACGGTTGAAGAAGATCAGG

mRNA sequence

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Protein sequence

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SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDL
ERLKKIR

MS021564 (gene) of Bitter gourd (TR) v1 genome