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MS021565 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS021565
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description40S ribosomal protein S18
Genome locationscaffold108:87918..88022
RNA-Seq ExpressionMS021565
SyntenyMS021565
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0045892 - negative regulation of transcription, DNA-templated (biological process)
GO:0005829 - cytosol (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003714 - transcription corepressor activity (molecular function)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001892 - Ribosomal protein S13
IPR010979 - Ribosomal protein S13-like, H2TH
IPR018269 - Ribosomal protein S13, conserved site
IPR027437 - 30s ribosomal protein S13, C-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB3452049.1 unnamed protein product [Digitaria exilis]3.0e-10100Show/hide
Query:  RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
        RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Subjt:  RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
CAD6214954.1 unnamed protein product [Miscanthus lutarioriparius]3.0e-10100Show/hide
Query:  RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
        RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Subjt:  RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
KAF3436281.1 hypothetical protein FNV43_RR23373 [Rhamnella rubrinervis]3.0e-10100Show/hide
Query:  RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
        RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Subjt:  RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
NP_001315449.1 40S ribosomal protein S18-like [Solanum lycopersicum]3.0e-10100Show/hide
Query:  RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
        RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Subjt:  RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
TXG53242.1 hypothetical protein EZV62_022411 [Acer yangbiense]3.0e-10100Show/hide
Query:  RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
        RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Subjt:  RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
TrEMBL top hitse value%identityAlignment
A0A059C7Z2 Uncharacterized protein1.4e-10100Show/hide
Query:  RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
        RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Subjt:  RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
A0A1U8I1R6 40S ribosomal protein S181.4e-10100Show/hide
Query:  RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
        RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Subjt:  RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
A0A6J1IJ52 40S ribosomal protein S18-like1.4e-10100Show/hide
Query:  RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
        RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Subjt:  RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
G3MMU5 40S ribosomal protein S181.4e-10100Show/hide
Query:  RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
        RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Subjt:  RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
K3XMV0 Uncharacterized protein1.4e-10100Show/hide
Query:  RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
        RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Subjt:  RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
SwissProt top hitse value%identityAlignment
P34788 40S ribosomal protein S183.9e-13100Show/hide
Query:  RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
        RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Subjt:  RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
P41094 40S ribosomal protein S187.4e-1291.43Show/hide
Query:  RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
        R+HRGLRHYWGLRVRGQHTKTTGRRG+TVGVSKK+
Subjt:  RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Q8ISP0 40S ribosomal protein S181.6e-1191.43Show/hide
Query:  RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
        R HRGLRHYWGLRVRGQHTKTTGRRG+TVGVSKK+
Subjt:  RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Q8IT98 40S ribosomal protein S183.7e-1188.57Show/hide
Query:  RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
        R HRGLRHYWGLRVRGQHTKTTGRRG+TVGV+KK+
Subjt:  RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Q962R1 40S ribosomal protein S182.8e-1188.57Show/hide
Query:  RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
        R HRG+RHYWGLRVRGQHTKTTGRRG+TVGVSKK+
Subjt:  RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Arabidopsis top hitse value%identityAlignment
AT1G22780.1 Ribosomal protein S13/S18 family2.8e-14100Show/hide
Query:  RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
        RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Subjt:  RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
AT1G34030.1 Ribosomal protein S13/S18 family2.8e-14100Show/hide
Query:  RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
        RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Subjt:  RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
AT4G09800.1 S18 ribosomal protein2.8e-14100Show/hide
Query:  RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
        RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Subjt:  RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGGAATCACCGTGGTCTGAGGCATTACTGGGGTCTCCGAGTCCGTGGTCAGCACACCAAGACCACTGGTCGCCGAGGGAAAACCGTTGGTGTCTCCAAGAAGCGT
mRNA sequenceShow/hide mRNA sequence
AGGAATCACCGTGGTCTGAGGCATTACTGGGGTCTCCGAGTCCGTGGTCAGCACACCAAGACCACTGGTCGCCGAGGGAAAACCGTTGGTGTCTCCAAGAAGCGT
Protein sequenceShow/hide protein sequence
RNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR