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MS021587 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS021587
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzf-RVT domain-containing protein
Genome locationscaffold108:529702..530038
RNA-Seq ExpressionMS021587
SyntenyMS021587
Gene Ontology termsGO:0009987 - cellular process (biological process)
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5463697.1 hypothetical protein F2P56_013842 [Juglans regia]4.6e-0933.04Show/hide
Query:  WEVTALLALI----GGHLIRVKKTFVSWVPNPSLGFTRSSFFQLRSAPSLPFITSLFSSLWKVKIPKKVKFFARQVLQGKVNSTDHIQRHSSFLGPQWCV
        WEV  + AL+       L+  ++  + W+P  +  F+ SS++++ S+ S       + S+WKVK+P KV FF      GKV +T++++R   F+   WCV
Subjt:  WEVTALLALI----GGHLIRVKKTFVSWVPNPSLGFTRSSFFQLRSAPSLPFITSLFSSLWKVKIPKKVKFFARQVLQGKVNSTDHIQRHSSFLGPQWCV

Query:  ICKNDIDDLNHI
        +CK D + +NH+
Subjt:  ICKNDIDDLNHI

KAG7011736.1 Epimerase family protein SDR39U1-like, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]1.3e-0836.04Show/hide
Query:  WEVTALLALIGG-HLIRVKKTFVSWVPNPSLGFTRSSFFQLRSAPSLPFITSLFSSLWKVKIPKKVKFFARQVLQGKVNSTDHIQRHSSF-LGPQWCVIC
        ++V++LL+ +G  HL    +  + W PNPS G    SFF + S+P          +  KV + K V+FF RQ L G+VN+   I++H SF L P WC+  
Subjt:  WEVTALLALIGG-HLIRVKKTFVSWVPNPSLGFTRSSFFQLRSAPSLPFITSLFSSLWKVKIPKKVKFFARQVLQGKVNSTDHIQRHSSF-LGPQWCVIC

Query:  KNDIDDLNHIL
            ++L+HI+
Subjt:  KNDIDDLNHIL

XP_022968893.1 epimerase family protein SDR39U1 homolog, chloroplastic-like [Cucurbita maxima]1.4e-1038.74Show/hide
Query:  WEVTALLALIGG-HLIRVKKTFVSWVPNPSLGFTRSSFFQLRSAPSLPFITSLFSSLWKVKIPKKVKFFARQVLQGKVNSTDHIQRHSSF-LGPQWCVIC
        ++V++LL+ +G  HL    +  + W PNPS G    SFF + S+P          +  KV + KK++FF  Q L G+VN+   IQ+HSSF LGPQWC   
Subjt:  WEVTALLALIGG-HLIRVKKTFVSWVPNPSLGFTRSSFFQLRSAPSLPFITSLFSSLWKVKIPKKVKFFARQVLQGKVNSTDHIQRHSSF-LGPQWCVIC

Query:  KNDIDDLNHIL
            ++L+HI+
Subjt:  KNDIDDLNHIL

XP_023554066.1 epimerase family protein SDR39U1 homolog, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo]2.7e-0936.94Show/hide
Query:  WEVTALLALIGG-HLIRVKKTFVSWVPNPSLGFTRSSFFQLRSAPSLPFITSLFSSLWKVKIPKKVKFFARQVLQGKVNSTDHIQRHSSF-LGPQWCVIC
        ++V++LL+ +G  HL    +  + W PNPS G    SFF + S+P          +  KV + KKV+FF  Q L G+VN+   I++H SF LGP WC   
Subjt:  WEVTALLALIGG-HLIRVKKTFVSWVPNPSLGFTRSSFFQLRSAPSLPFITSLFSSLWKVKIPKKVKFFARQVLQGKVNSTDHIQRHSSF-LGPQWCVIC

Query:  KNDIDDLNHIL
            ++L+HI+
Subjt:  KNDIDDLNHIL

XP_038887741.1 epimerase family protein SDR39U1 homolog, chloroplastic isoform X1 [Benincasa hispida]2.7e-0943.52Show/hide
Query:  VTALLALIGG-HLIRVKKTFVSWVPNPSLGFTRSSFFQLRSAPSLPFITSLFSSLWKVKIPKKVKFFARQVLQGKVNSTDHIQRHSSF-LGPQWCVICKN
        +++LL+L+G  HL   ++    W PNPS G +  SF  +  +P     TS   +L KVKI K V FFA Q L G+VN+   IQ HSSF LG QWC +C  
Subjt:  VTALLALIGG-HLIRVKKTFVSWVPNPSLGFTRSSFFQLRSAPSLPFITSLFSSLWKVKIPKKVKFFARQVLQGKVNSTDHIQRHSSF-LGPQWCVICKN

Query:  DIDDLNHI
          ++L+HI
Subjt:  DIDDLNHI

TrEMBL top hitse value%identityAlignment
A0A438D0T1 Putative ribonuclease H protein2.1e-0738.64Show/hide
Query:  SWVPNPSLGFTRSSFFQLRSAPSLPFITSLFSSLWKVKIPKKVKFFARQVLQGKVNSTDHIQ--RHSSFLGPQWCVICKNDIDDLNHI
        +W  + S  F+  SFF   S  S P +      LW  K+P KVK  A  V  GKVN+ D +Q  R    L PQWC++CK + + +NH+
Subjt:  SWVPNPSLGFTRSSFFQLRSAPSLPFITSLFSSLWKVKIPKKVKFFARQVLQGKVNSTDHIQ--RHSSFLGPQWCVICKNDIDDLNHI

A0A5A7UID7 Epimerase family protein SDR39U1-like protein4.2e-0841.82Show/hide
Query:  WEVTALLALIG-GHLIRVKKTFVSWVPNPSLGFTRSSFFQLRSAPSLPFITSLFSSLWKVKIPKKVKFFARQVLQGKVNSTDHIQRHSSF-LGPQWCVIC
        ++++++L+L+G GHL    ++     PNPS G + S  F L S       TS   +L KVKI KKV  FA   L  +VN    IQ HSSF LG QWC +C
Subjt:  WEVTALLALIG-GHLIRVKKTFVSWVPNPSLGFTRSSFFQLRSAPSLPFITSLFSSLWKVKIPKKVKFFARQVLQGKVNSTDHIQRHSSF-LGPQWCVIC

Query:  KNDIDDLNHI
            ++LNHI
Subjt:  KNDIDDLNHI

A0A5D3BCM9 Epimerase family protein SDR39U1-like protein4.2e-0841.82Show/hide
Query:  WEVTALLALIG-GHLIRVKKTFVSWVPNPSLGFTRSSFFQLRSAPSLPFITSLFSSLWKVKIPKKVKFFARQVLQGKVNSTDHIQRHSSF-LGPQWCVIC
        ++++++L+L+G GHL    ++     PNPS G + S  F L S       TS   +L KVKI KKV  FA   L  +VN    IQ HSSF LG QWC +C
Subjt:  WEVTALLALIG-GHLIRVKKTFVSWVPNPSLGFTRSSFFQLRSAPSLPFITSLFSSLWKVKIPKKVKFFARQVLQGKVNSTDHIQRHSSF-LGPQWCVIC

Query:  KNDIDDLNHI
            ++LNHI
Subjt:  KNDIDDLNHI

A0A6J1GM24 epimerase family protein SDR39U1 homolog, chloroplastic-like isoform X18.5e-0935.14Show/hide
Query:  WEVTALLALIGG-HLIRVKKTFVSWVPNPSLGFTRSSFFQLRSAPSLPFITSLFSSLWKVKIPKKVKFFARQVLQGKVNSTDHIQRHSSF-LGPQWCVIC
        +++++LL+ +G  HL    +  + W PNPS G    SFF + S+P          +  KV + K V+FF RQ L G+VN+   I++H SF L P WC+  
Subjt:  WEVTALLALIGG-HLIRVKKTFVSWVPNPSLGFTRSSFFQLRSAPSLPFITSLFSSLWKVKIPKKVKFFARQVLQGKVNSTDHIQRHSSF-LGPQWCVIC

Query:  KNDIDDLNHIL
            ++L+HI+
Subjt:  KNDIDDLNHIL

A0A6J1HZE6 epimerase family protein SDR39U1 homolog, chloroplastic-like7.0e-1138.74Show/hide
Query:  WEVTALLALIGG-HLIRVKKTFVSWVPNPSLGFTRSSFFQLRSAPSLPFITSLFSSLWKVKIPKKVKFFARQVLQGKVNSTDHIQRHSSF-LGPQWCVIC
        ++V++LL+ +G  HL    +  + W PNPS G    SFF + S+P          +  KV + KK++FF  Q L G+VN+   IQ+HSSF LGPQWC   
Subjt:  WEVTALLALIGG-HLIRVKKTFVSWVPNPSLGFTRSSFFQLRSAPSLPFITSLFSSLWKVKIPKKVKFFARQVLQGKVNSTDHIQRHSSF-LGPQWCVIC

Query:  KNDIDDLNHIL
            ++L+HI+
Subjt:  KNDIDDLNHIL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGGGAGGTTACTGCTTTGCTTGCTTTGATAGGGGGACATCTAATACGTGTAAAGAAGACATTCGTGTCTTGGGTCCCGAACCCGTCTTTGGGTTTCACTCGTAGTTCTTT
TTTTCAGCTTCGGAGTGCTCCATCCCTCCCCTTTATCACCTCGTTATTTTCCTCCCTTTGGAAGGTAAAGATTCCGAAGAAGGTTAAGTTCTTTGCCCGGCAAGTTTTGC
AAGGGAAAGTTAATAGCACAGATCATATCCAAAGACATTCTTCCTTTTTGGGGCCTCAATGGTGTGTCATCTGCAAAAATGATATTGATGATCTTAATCATATTTTA
mRNA sequenceShow/hide mRNA sequence
TGGGAGGTTACTGCTTTGCTTGCTTTGATAGGGGGACATCTAATACGTGTAAAGAAGACATTCGTGTCTTGGGTCCCGAACCCGTCTTTGGGTTTCACTCGTAGTTCTTT
TTTTCAGCTTCGGAGTGCTCCATCCCTCCCCTTTATCACCTCGTTATTTTCCTCCCTTTGGAAGGTAAAGATTCCGAAGAAGGTTAAGTTCTTTGCCCGGCAAGTTTTGC
AAGGGAAAGTTAATAGCACAGATCATATCCAAAGACATTCTTCCTTTTTGGGGCCTCAATGGTGTGTCATCTGCAAAAATGATATTGATGATCTTAATCATATTTTA
Protein sequenceShow/hide protein sequence
WEVTALLALIGGHLIRVKKTFVSWVPNPSLGFTRSSFFQLRSAPSLPFITSLFSSLWKVKIPKKVKFFARQVLQGKVNSTDHIQRHSSFLGPQWCVICKNDIDDLNHIL