CuGenDBv2

Gene ID	MS021619
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	double-stranded RNA-binding protein 4-like isoform X3
Genome location	scaffold320:195195..195447
RNA-Seq Expression	MS021619
Synteny	MS021619
Gene Ontology terms	GO:0016075 - rRNA catabolic process (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0003723 - RNA binding (molecular function) GO:0004525 - ribonuclease III activity (molecular function)
InterPro domains	IPR011907 - Ribonuclease III IPR014720 - Double-stranded RNA-binding domain

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022935532.1 double-stranded RNA-binding protein 4-like isoform X1 [Cucurbita moschata]

1.8e-21

64.29

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Query:  IYKSELNEYAQKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPNRR-ADQDAARIALEYISQRTKHDGFLLLHREV
        +YK+ L+EY QK+ IPLPVYQTF++GS  +PKYRS V V+ V + SPNTF NRR A+QDAARIALEYIS++ K DGF+LLH ++
Subjt:  IYKSELNEYAQKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPNRR-ADQDAARIALEYISQRTKHDGFLLLHREV

XP_022935533.1 double-stranded RNA-binding protein 4-like isoform X2 [Cucurbita moschata]

1.8e-21

64.29

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Query:  IYKSELNEYAQKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPNRR-ADQDAARIALEYISQRTKHDGFLLLHREV
        +YK+ L+EY QK+ IPLPVYQTF++GS  +PKYRS V V+ V + SPNTF NRR A+QDAARIALEYIS++ K DGF+LLH ++
Subjt:  IYKSELNEYAQKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPNRR-ADQDAARIALEYISQRTKHDGFLLLHREV

XP_022984141.1 double-stranded RNA-binding protein 4-like isoform X1 [Cucurbita maxima]

1.8e-21

64.29

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Query:  IYKSELNEYAQKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPNRR-ADQDAARIALEYISQRTKHDGFLLLHREV
        +YK+ L+EY QK+ IPLPVYQTF++GS  +PKYRS V V+ V + SPNTF NRR A+QDAARIALEYIS++ K DGF+LLH ++
Subjt:  IYKSELNEYAQKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPNRR-ADQDAARIALEYISQRTKHDGFLLLHREV

XP_022984142.1 double-stranded RNA-binding protein 4-like isoform X2 [Cucurbita maxima]

1.8e-21

64.29

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Query:  IYKSELNEYAQKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPNRR-ADQDAARIALEYISQRTKHDGFLLLHREV
        +YK+ L+EY QK+ IPLPVYQTF++GS  +PKYRS V V+ V + SPNTF NRR A+QDAARIALEYIS++ K DGF+LLH ++
Subjt:  IYKSELNEYAQKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPNRR-ADQDAARIALEYISQRTKHDGFLLLHREV

XP_022984143.1 double-stranded RNA-binding protein 4-like isoform X3 [Cucurbita maxima]

1.8e-21

64.29

Show/hide

Query:  IYKSELNEYAQKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPNRR-ADQDAARIALEYISQRTKHDGFLLLHREV
        +YK+ L+EY QK+ IPLPVYQTF++GS  +PKYRS V V+ V + SPNTF NRR A+QDAARIALEYIS++ K DGF+LLH ++
Subjt:  IYKSELNEYAQKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPNRR-ADQDAARIALEYISQRTKHDGFLLLHREV

TrEMBL top hits

e value

%identity

Alignment

A0A6J1F5U3 double-stranded RNA-binding protein 4-like isoform X1

8.7e-22

64.29

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Query:  IYKSELNEYAQKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPNRR-ADQDAARIALEYISQRTKHDGFLLLHREV
        +YK+ L+EY QK+ IPLPVYQTF++GS  +PKYRS V V+ V + SPNTF NRR A+QDAARIALEYIS++ K DGF+LLH ++
Subjt:  IYKSELNEYAQKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPNRR-ADQDAARIALEYISQRTKHDGFLLLHREV

A0A6J1FAT0 double-stranded RNA-binding protein 4-like isoform X2

8.7e-22

64.29

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Query:  IYKSELNEYAQKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPNRR-ADQDAARIALEYISQRTKHDGFLLLHREV
        +YK+ L+EY QK+ IPLPVYQTF++GS  +PKYRS V V+ V + SPNTF NRR A+QDAARIALEYIS++ K DGF+LLH ++
Subjt:  IYKSELNEYAQKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPNRR-ADQDAARIALEYISQRTKHDGFLLLHREV

A0A6J1J1D4 double-stranded RNA-binding protein 4-like isoform X2

8.7e-22

64.29

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Query:  IYKSELNEYAQKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPNRR-ADQDAARIALEYISQRTKHDGFLLLHREV
        +YK+ L+EY QK+ IPLPVYQTF++GS  +PKYRS V V+ V + SPNTF NRR A+QDAARIALEYIS++ K DGF+LLH ++
Subjt:  IYKSELNEYAQKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPNRR-ADQDAARIALEYISQRTKHDGFLLLHREV

A0A6J1J4E3 double-stranded RNA-binding protein 4-like isoform X1

8.7e-22

64.29

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Query:  IYKSELNEYAQKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPNRR-ADQDAARIALEYISQRTKHDGFLLLHREV
        +YK+ L+EY QK+ IPLPVYQTF++GS  +PKYRS V V+ V + SPNTF NRR A+QDAARIALEYIS++ K DGF+LLH ++
Subjt:  IYKSELNEYAQKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPNRR-ADQDAARIALEYISQRTKHDGFLLLHREV

A0A6J1J9P9 double-stranded RNA-binding protein 4-like isoform X3

8.7e-22

64.29

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Query:  IYKSELNEYAQKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPNRR-ADQDAARIALEYISQRTKHDGFLLLHREV
        +YK+ L+EY QK+ IPLPVYQTF++GS  +PKYRS V V+ V + SPNTF NRR A+QDAARIALEYIS++ K DGF+LLH ++
Subjt:  IYKSELNEYAQKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPNRR-ADQDAARIALEYISQRTKHDGFLLLHREV

SwissProt top hits

e value

%identity

Alignment

O04492 Double-stranded RNA-binding protein 1

1.5e-07

38.36

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Query:  IYKSELNEYAQKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTS-PNTFPNRRADQDAARIALEYISQRTK
        ++KS L EYAQK  +P PVY+   +G SH   ++S V ++ VR+ S P  F  + A+Q AA +AL  +++ ++
Subjt:  IYKSELNEYAQKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTS-PNTFPNRRADQDAARIALEYISQRTK

Q0DJA3 Double-stranded RNA-binding protein 3

3.4e-07

44.62

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Query:  IYKSELNEYAQKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPNRR-ADQDAARIAL
        ++KS L EYAQKA +  P Y T  +G SH P ++S V +N   + S   F NR+ A+Q AA +AL
Subjt:  IYKSELNEYAQKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPNRR-ADQDAARIAL

Q0IQN6 Double-stranded RNA-binding protein 8

1.2e-07

43.08

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Query:  IYKSELNEYAQKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTS-PNTFPNRRADQDAARIAL
        ++KS L EYAQK  +  P Y TF +G SH P ++S V +N   + S P  F  + A+Q AA +AL
Subjt:  IYKSELNEYAQKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTS-PNTFPNRRADQDAARIAL

Q0IV63 Double-stranded RNA-binding protein 7

4.0e-08

44.62

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Query:  IYKSELNEYAQKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTS-PNTFPNRRADQDAARIAL
        ++KS L EYAQKA +  P Y TF +G SH P ++S V +N   + S P  F  + A+Q AA +AL
Subjt:  IYKSELNEYAQKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTS-PNTFPNRRADQDAARIAL

Q9AV50 Double-stranded RNA-binding protein 6

4.5e-07

36.62

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Query:  IYKSELNEYAQKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPN-RRADQDAARIALEYISQR
        +YK++L E AQ++   LP Y    +G  H P++++ VN N  +F SP  F   R+A+  AA +AL  +++R
Subjt:  IYKSELNEYAQKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPN-RRADQDAARIALEYISQR

Arabidopsis top hits

e value

%identity

Alignment

AT1G09700.1 dsRNA-binding domain-like superfamily protein

1.1e-08

38.36

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Query:  IYKSELNEYAQKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTS-PNTFPNRRADQDAARIALEYISQRTK
        ++KS L EYAQK  +P PVY+   +G SH   ++S V ++ VR+ S P  F  + A+Q AA +AL  +++ ++
Subjt:  IYKSELNEYAQKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTS-PNTFPNRRADQDAARIALEYISQRTK

AT2G28380.1 dsRNA-binding protein 2

3.5e-07

36.62

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Query:  IYKSELNEYAQKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPN-RRADQDAARIALEYISQR
        +YK++L E AQ++   LP Y    +G  H P++++ VN N   F SP      R+A+  AA +AL  +S R
Subjt:  IYKSELNEYAQKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPN-RRADQDAARIALEYISQR

AT3G26932.1 dsRNA-binding protein 3

1.7e-06

35.21

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Query:  IYKSELNEYAQKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPN-RRADQDAARIALEYISQR
        +YK++L E AQ++   LP Y    +G  H P++++ VN N   F SP      R+A+  AA +AL  +S +
Subjt:  IYKSELNEYAQKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPN-RRADQDAARIALEYISQR

AT3G26932.2 dsRNA-binding protein 3

1.7e-06

35.21

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Query:  IYKSELNEYAQKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPN-RRADQDAARIALEYISQR
        +YK++L E AQ++   LP Y    +G  H P++++ VN N   F SP      R+A+  AA +AL  +S +
Subjt:  IYKSELNEYAQKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPN-RRADQDAARIALEYISQR

AT5G41070.1 dsRNA-binding protein 5

1.7e-06

35.21

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Query:  IYKSELNEYAQKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPN-RRADQDAARIALEYISQR
        +YK++L E AQ++   LP Y    +G  H P++++ VN N   F SP      R+A+  AA ++L  +S R
Subjt:  IYKSELNEYAQKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPN-RRADQDAARIALEYISQR

Sequences

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CDS sequence

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ATATACAAGAGCGAATTGAATGAATATGCTCAAAAAGCAATCATTCCATTACCAGTTTATCAGACATTTAATAAAGGATCTTCACACCTACCAAAGTATAGGTCAGTTGT
GAATGTCAATAGGGTACGTTTCACGTCTCCAAATACGTTTCCTAATCGAAGGGCTGATCAGGATGCTGCAAGAATTGCCCTTGAGTACATATCACAAAGAACAAAGCACG
ATGGCTTTCTTCTTCTTCATCGGGAGGTA

mRNA sequence

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Protein sequence

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IYKSELNEYAQKAIIPLPVYQTFNKGSSHLPKYRSVVNVNRVRFTSPNTFPNRRADQDAARIALEYISQRTKHDGFLLLHREV

MS021619 (gene) of Bitter gourd (TR) v1 genome