CuGenDBv2

Gene ID	MS021625
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	RNase H domain-containing protein
Genome location	scaffold320:257018..257290
RNA-Seq Expression	MS021625
Synteny	MS021625
Gene Ontology terms	GO:0044238 - primary metabolic process (biological process) GO:0071704 - organic substance metabolic process (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR002156 - Ribonuclease H domain IPR012337 - Ribonuclease H-like superfamily IPR044730 - Ribonuclease H-like domain, plant type

Homology

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GenBank top hits

e value

%identity

Alignment

MBA0760086.1 hypothetical protein [Gossypium trilobum]

3.9e-09

40.48

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Query:  RTLCRWCPPPDDWFKVNVDAGFLVASLREGLGMALRDSHGHLLLSAAISITHYVSVDLAESWALHYGLSLALDAGFRPLLLETD
        R++ +W PPP  W K+NVDAG L+A  R   G  +R+  G ++ S         SV +AE+ A+ +GL  ALD GF  ++LE+D
Subjt:  RTLCRWCPPPDDWFKVNVDAGFLVASLREGLGMALRDSHGHLLLSAAISITHYVSVDLAESWALHYGLSLALDAGFRPLLLETD

RLN24050.1 hypothetical protein C2845_PM07G13240 [Panicum miliaceum]

6.0e-10

36.78

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Query:  RVDRTLCRWCPPPDDWFKVNVDAGFLVASLREGLGMALRDSHGHLLLSAAISITHYVSVDLAESWALHYGLSLALDAGFRPLLLETD
        R+  +  RW  PPDDW K+N DA +  A+     G+ +R+SHG +L++AA + ++ + V +AE+ A   G+ LA++ G   ++LE D
Subjt:  RVDRTLCRWCPPPDDWFKVNVDAGFLVASLREGLGMALRDSHGHLLLSAAISITHYVSVDLAESWALHYGLSLALDAGFRPLLLETD

XP_015385446.1 uncharacterized protein LOC107176866 [Citrus sinensis]

1.3e-09

40.48

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Query:  RTLCRWCPPPDDWFKVNVDAGFLVASLREGLGMALRDSHGHLLLSAAISITHYVSVDLAESWALHYGLSLALDAGFRPLLLETD
        +T   W PPP  WFKVNVDA         GLG  +RD+ G+++ +A  +   + +V  AE+ A+ +GL  A+DAG   L++ETD
Subjt:  RTLCRWCPPPDDWFKVNVDAGFLVASLREGLGMALRDSHGHLLLSAAISITHYVSVDLAESWALHYGLSLALDAGFRPLLLETD

XP_022135942.1 uncharacterized protein LOC111007775 [Momordica charantia]

1.0e-09

48.1

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Query:  WCPPPDDWFKVNVDAGFLVASLREGLGMALRDSHGHLLLSAAISITHYVSVDLAESWALHYGLSLALDAGFRPLLLETD
        WCPP   +FKVNVDA F   +   GL + +RDS  ++LLSA   ITH   V LAE  A   G+ LA++AG  P  +ETD
Subjt:  WCPPPDDWFKVNVDAGFLVASLREGLGMALRDSHGHLLLSAAISITHYVSVDLAESWALHYGLSLALDAGFRPLLLETD

XP_024042628.1 uncharacterized protein LOC112099434 [Citrus clementina]

6.0e-10

40.48

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Query:  RTLCRWCPPPDDWFKVNVDAGFLVASLREGLGMALRDSHGHLLLSAAISITHYVSVDLAESWALHYGLSLALDAGFRPLLLETD
        +T   W PPP  WFKVNVDA         GLG  +RD+ G+++ +A  +   + +V  AE+ A+ +GL +A+DAG   L++ETD
Subjt:  RTLCRWCPPPDDWFKVNVDAGFLVASLREGLGMALRDSHGHLLLSAAISITHYVSVDLAESWALHYGLSLALDAGFRPLLLETD

TrEMBL top hits

e value

%identity

Alignment

A0A1U8J822 uncharacterized protein LOC107902718

2.1e-08

38.1

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Query:  RTLCRWCPPPDDWFKVNVDAGFLVASLREGLGMALRDSHGHLLLSAAISITHYVSVDLAESWALHYGLSLALDAGFRPLLLETD
        R++ +W PPP  W K+NVD G  +A  R   G  +R+  G ++ S         SV +AE+ A+ +GL  ALD GF  ++LE+D
Subjt:  RTLCRWCPPPDDWFKVNVDAGFLVASLREGLGMALRDSHGHLLLSAAISITHYVSVDLAESWALHYGLSLALDAGFRPLLLETD

A0A3L6SPT0 Uncharacterized protein

2.9e-10

36.78

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Query:  RVDRTLCRWCPPPDDWFKVNVDAGFLVASLREGLGMALRDSHGHLLLSAAISITHYVSVDLAESWALHYGLSLALDAGFRPLLLETD
        R+  +  RW  PPDDW K+N DA +  A+     G+ +R+SHG +L++AA + ++ + V +AE+ A   G+ LA++ G   ++LE D
Subjt:  RVDRTLCRWCPPPDDWFKVNVDAGFLVASLREGLGMALRDSHGHLLLSAAISITHYVSVDLAESWALHYGLSLALDAGFRPLLLETD

A0A6J1C467 uncharacterized protein LOC111007775

4.9e-10

48.1

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Query:  WCPPPDDWFKVNVDAGFLVASLREGLGMALRDSHGHLLLSAAISITHYVSVDLAESWALHYGLSLALDAGFRPLLLETD
        WCPP   +FKVNVDA F   +   GL + +RDS  ++LLSA   ITH   V LAE  A   G+ LA++AG  P  +ETD
Subjt:  WCPPPDDWFKVNVDAGFLVASLREGLGMALRDSHGHLLLSAAISITHYVSVDLAESWALHYGLSLALDAGFRPLLLETD

A0A7J9D462 Uncharacterized protein

7.1e-09

40.48

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Query:  RTLCRWCPPPDDWFKVNVDAGFLVASLREGLGMALRDSHGHLLLSAAISITHYVSVDLAESWALHYGLSLALDAGFRPLLLETD
        R++ +W PPP  WFKVNVDAG  +A+ R      +R+  G ++ S        +SV +AE+ A+ +GL  ALD GF  ++LE+D
Subjt:  RTLCRWCPPPDDWFKVNVDAGFLVASLREGLGMALRDSHGHLLLSAAISITHYVSVDLAESWALHYGLSLALDAGFRPLLLETD

A0A7J9DH89 RNase H domain-containing protein

1.9e-09

40.48

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Query:  RTLCRWCPPPDDWFKVNVDAGFLVASLREGLGMALRDSHGHLLLSAAISITHYVSVDLAESWALHYGLSLALDAGFRPLLLETD
        R++ +W PPP  W K+NVDAG L+A  R   G  +R+  G ++ S         SV +AE+ A+ +GL  ALD GF  ++LE+D
Subjt:  RTLCRWCPPPDDWFKVNVDAGFLVASLREGLGMALRDSHGHLLLSAAISITHYVSVDLAESWALHYGLSLALDAGFRPLLLETD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein

1.2e-05

30.34

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Query:  PRVDRTL-CRWCPPPDDWFKVNVDAGFLVASLREGLGMALRDSHGHLLLSAAISITHYVSVDLAESWALHYGLSLALDAGFRPLLLETD
        P+V+R L  +W  PP  W K N DA + + + R G+G  LR+  G +L   A ++    +V  AE  AL + +       ++ ++ E+D
Subjt:  PRVDRTL-CRWCPPPDDWFKVNVDAGFLVASLREGLGMALRDSHGHLLLSAAISITHYVSVDLAESWALHYGLSLALDAGFRPLLLETD

AT4G29090.1 Ribonuclease H-like superfamily protein

5.6e-06

31.46

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Query:  PRVDRTLC-RWCPPPDDWFKVNVDAGFLVASLREGLGMALRDSHGHLLLSAAISITHYVSVDLAESWALHYGLSLALDAGFRPLLLETD
        P+V+R+ C RW PPP  W K N DA +   + R G+G  LR+  G +    A ++    SV  AE  A+ + +       +  ++ E+D
Subjt:  PRVDRTLC-RWCPPPDDWFKVNVDAGFLVASLREGLGMALRDSHGHLLLSAAISITHYVSVDLAESWALHYGLSLALDAGFRPLLLETD

Sequences

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CDS sequence

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TCTCCACGGGTCGACCGAACTTTGTGTCGCTGGTGTCCTCCGCCGGACGACTGGTTCAAGGTCAACGTGGATGCTGGTTTCCTTGTCGCTTCGCTTAGAGAAGGTTTGGG
GATGGCTCTTCGAGACTCACATGGCCATTTACTCTTATCTGCTGCCATCTCGATCACTCACTATGTCTCGGTTGATCTTGCCGAGAGTTGGGCTCTTCATTATGGCCTTT
CCTTGGCTCTTGATGCGGGGTTTCGACCTTTGCTCCTAGAGACGGATTTGATG

mRNA sequence

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Protein sequence

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SPRVDRTLCRWCPPPDDWFKVNVDAGFLVASLREGLGMALRDSHGHLLLSAAISITHYVSVDLAESWALHYGLSLALDAGFRPLLLETDLM

MS021625 (gene) of Bitter gourd (TR) v1 genome