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MS021626 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS021626
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPatatin
Genome locationscaffold320:264920..265088
RNA-Seq ExpressionMS021626
SyntenyMS021626
Gene Ontology termsGO:0009626 - plant-type hypersensitive response (biological process)
GO:0016042 - lipid catabolic process (biological process)
GO:0031408 - oxylipin biosynthetic process (biological process)
GO:0046686 - response to cadmium ion (biological process)
GO:0051607 - defense response to virus (biological process)
GO:0071456 - cellular response to hypoxia (biological process)
GO:0005773 - vacuole (cellular component)
GO:0016020 - membrane (cellular component)
GO:0004620 - phospholipase activity (molecular function)
GO:0042802 - identical protein binding (molecular function)
GO:0045735 - nutrient reservoir activity (molecular function)
GO:0047372 - acylglycerol lipase activity (molecular function)
InterPro domainsIPR002641 - Patatin-like phospholipase domain
IPR016035 - Acyl transferase/acyl hydrolase/lysophospholipase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RWR90046.1 patatin-like protein 2 [Cinnamomum micranthum f. kanehirae]2.3e-1779.63Show/hide
Query:  DAQLADYFDVVAGTSTGGLLTAMLTAPNQNNRPLFRACELKDFYVEQCPKIFPQ
        DA+LADYFDV+AGTSTGGL+TAMLTAPN+N RPLF A ++KDFY+E CPKIFPQ
Subjt:  DAQLADYFDVVAGTSTGGLLTAMLTAPNQNNRPLFRACELKDFYVEQCPKIFPQ

XP_020255905.1 patatin-like protein 2 isoform X1 [Asparagus officinalis]1.0e-1781.82Show/hide
Query:  DAQLADYFDVVAGTSTGGLLTAMLTAPNQNNRPLFRACELKDFYVEQCPKIFPQK
        DA+LADYFDVVAGTSTGGL+TAMLTAP+++NRPLF A E+KDFY+E CPKIFPQK
Subjt:  DAQLADYFDVVAGTSTGGLLTAMLTAPNQNNRPLFRACELKDFYVEQCPKIFPQK

XP_020255906.1 patatin-like protein 2 isoform X2 [Asparagus officinalis]1.0e-1781.82Show/hide
Query:  DAQLADYFDVVAGTSTGGLLTAMLTAPNQNNRPLFRACELKDFYVEQCPKIFPQK
        DA+LADYFDVVAGTSTGGL+TAMLTAP+++NRPLF A E+KDFY+E CPKIFPQK
Subjt:  DAQLADYFDVVAGTSTGGLLTAMLTAPNQNNRPLFRACELKDFYVEQCPKIFPQK

XP_027085796.1 patatin-like protein 2 [Coffea arabica]1.0e-1778.18Show/hide
Query:  DAQLADYFDVVAGTSTGGLLTAMLTAPNQNNRPLFRACELKDFYVEQCPKIFPQK
        DA+LADYFDV+AGTSTGGL+TAMLTAPN+NNRPL+ A ++KDFY+E CPKIFPQ+
Subjt:  DAQLADYFDVVAGTSTGGLLTAMLTAPNQNNRPLFRACELKDFYVEQCPKIFPQK

XP_027185340.1 patatin-like protein 2 [Coffea eugenioides]1.0e-1778.18Show/hide
Query:  DAQLADYFDVVAGTSTGGLLTAMLTAPNQNNRPLFRACELKDFYVEQCPKIFPQK
        DA+LADYFDV+AGTSTGGL+TAMLTAPN+NNRPL+ A ++KDFY+E CPKIFPQ+
Subjt:  DAQLADYFDVVAGTSTGGLLTAMLTAPNQNNRPLFRACELKDFYVEQCPKIFPQK

TrEMBL top hitse value%identityAlignment
A0A2R6QXX5 Patatin1.1e-1777.78Show/hide
Query:  DAQLADYFDVVAGTSTGGLLTAMLTAPNQNNRPLFRACELKDFYVEQCPKIFPQ
        DA++ADYFDV+AGTSTGGL+TAMLTAPN+NNRPLF A ++KDFY++ CPKIFPQ
Subjt:  DAQLADYFDVVAGTSTGGLLTAMLTAPNQNNRPLFRACELKDFYVEQCPKIFPQ

A0A3S3PGE7 Patatin1.1e-1779.63Show/hide
Query:  DAQLADYFDVVAGTSTGGLLTAMLTAPNQNNRPLFRACELKDFYVEQCPKIFPQ
        DA+LADYFDV+AGTSTGGL+TAMLTAPN+N RPLF A ++KDFY+E CPKIFPQ
Subjt:  DAQLADYFDVVAGTSTGGLLTAMLTAPNQNNRPLFRACELKDFYVEQCPKIFPQ

A0A443PGZ7 Patatin1.1e-1779.63Show/hide
Query:  DAQLADYFDVVAGTSTGGLLTAMLTAPNQNNRPLFRACELKDFYVEQCPKIFPQ
        DA+LADYFDV+AGTSTGGL+TAMLTAPN+N RPLF A ++KDFY+E CPKIFPQ
Subjt:  DAQLADYFDVVAGTSTGGLLTAMLTAPNQNNRPLFRACELKDFYVEQCPKIFPQ

A0A5P1FCC8 Patatin5.1e-1881.82Show/hide
Query:  DAQLADYFDVVAGTSTGGLLTAMLTAPNQNNRPLFRACELKDFYVEQCPKIFPQK
        DA+LADYFDVVAGTSTGGL+TAMLTAP+++NRPLF A E+KDFY+E CPKIFPQK
Subjt:  DAQLADYFDVVAGTSTGGLLTAMLTAPNQNNRPLFRACELKDFYVEQCPKIFPQK

A0A6P6U6L9 Patatin5.1e-1878.18Show/hide
Query:  DAQLADYFDVVAGTSTGGLLTAMLTAPNQNNRPLFRACELKDFYVEQCPKIFPQK
        DA+LADYFDV+AGTSTGGL+TAMLTAPN+NNRPL+ A ++KDFY+E CPKIFPQ+
Subjt:  DAQLADYFDVVAGTSTGGLLTAMLTAPNQNNRPLFRACELKDFYVEQCPKIFPQK

SwissProt top hitse value%identityAlignment
A2YW91 Patatin-like protein 23.4e-1980Show/hide
Query:  DAQLADYFDVVAGTSTGGLLTAMLTAPNQNNRPLFRACELKDFYVEQCPKIFPQK
        DA++ADYFDVVAGTSTGGLLTAMLTAPN+NNRPLF A EL  FY+E  P IFPQK
Subjt:  DAQLADYFDVVAGTSTGGLLTAMLTAPNQNNRPLFRACELKDFYVEQCPKIFPQK

O23179 Patatin-like protein 11.7e-1566.67Show/hide
Query:  DAQLADYFDVVAGTSTGGLLTAMLTAPNQNNRPLFRACELKDFYVEQCPKIFPQ
        +A+LADYFDV+AGTSTGGL+TAMLT P++  RP F A ++  FY+E CPKIFPQ
Subjt:  DAQLADYFDVVAGTSTGGLLTAMLTAPNQNNRPLFRACELKDFYVEQCPKIFPQ

O23180 Patatin-like protein 54.6e-1671.15Show/hide
Query:  QLADYFDVVAGTSTGGLLTAMLTAPNQNNRPLFRACELKDFYVEQCPKIFPQ
        ++ADYFDV+AGTSTGGL+TAMLTAP++N RP F A E+  FY+E CPKIFPQ
Subjt:  QLADYFDVVAGTSTGGLLTAMLTAPNQNNRPLFRACELKDFYVEQCPKIFPQ

O48723 Patatin-like protein 25.2e-2079.63Show/hide
Query:  DAQLADYFDVVAGTSTGGLLTAMLTAPNQNNRPLFRACELKDFYVEQCPKIFPQ
        +A+LADYFDV+AGTSTGGL+TAMLTAPN+  RPLF A E+KDFY+EQCPKIFPQ
Subjt:  DAQLADYFDVVAGTSTGGLLTAMLTAPNQNNRPLFRACELKDFYVEQCPKIFPQ

Q6ZJD3 Patatin-like protein 23.4e-1980Show/hide
Query:  DAQLADYFDVVAGTSTGGLLTAMLTAPNQNNRPLFRACELKDFYVEQCPKIFPQK
        DA++ADYFDVVAGTSTGGLLTAMLTAPN+NNRPLF A EL  FY+E  P IFPQK
Subjt:  DAQLADYFDVVAGTSTGGLLTAMLTAPNQNNRPLFRACELKDFYVEQCPKIFPQK

Arabidopsis top hitse value%identityAlignment
AT2G26560.1 phospholipase A 2A3.7e-2179.63Show/hide
Query:  DAQLADYFDVVAGTSTGGLLTAMLTAPNQNNRPLFRACELKDFYVEQCPKIFPQ
        +A+LADYFDV+AGTSTGGL+TAMLTAPN+  RPLF A E+KDFY+EQCPKIFPQ
Subjt:  DAQLADYFDVVAGTSTGGLLTAMLTAPNQNNRPLFRACELKDFYVEQCPKIFPQ

AT4G37060.1 PATATIN-like protein 53.2e-1771.15Show/hide
Query:  QLADYFDVVAGTSTGGLLTAMLTAPNQNNRPLFRACELKDFYVEQCPKIFPQ
        ++ADYFDV+AGTSTGGL+TAMLTAP++N RP F A E+  FY+E CPKIFPQ
Subjt:  QLADYFDVVAGTSTGGLLTAMLTAPNQNNRPLFRACELKDFYVEQCPKIFPQ

AT4G37060.2 PATATIN-like protein 53.2e-1771.15Show/hide
Query:  QLADYFDVVAGTSTGGLLTAMLTAPNQNNRPLFRACELKDFYVEQCPKIFPQ
        ++ADYFDV+AGTSTGGL+TAMLTAP++N RP F A E+  FY+E CPKIFPQ
Subjt:  QLADYFDVVAGTSTGGLLTAMLTAPNQNNRPLFRACELKDFYVEQCPKIFPQ

AT4G37070.2 Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein1.2e-1666.67Show/hide
Query:  DAQLADYFDVVAGTSTGGLLTAMLTAPNQNNRPLFRACELKDFYVEQCPKIFPQ
        +A+LADYFDV+AGTSTGGL+TAMLT P++  RP F A ++  FY+E CPKIFPQ
Subjt:  DAQLADYFDVVAGTSTGGLLTAMLTAPNQNNRPLFRACELKDFYVEQCPKIFPQ

AT4G37070.3 Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein1.2e-1666.67Show/hide
Query:  DAQLADYFDVVAGTSTGGLLTAMLTAPNQNNRPLFRACELKDFYVEQCPKIFPQ
        +A+LADYFDV+AGTSTGGL+TAMLT P++  RP F A ++  FY+E CPKIFPQ
Subjt:  DAQLADYFDVVAGTSTGGLLTAMLTAPNQNNRPLFRACELKDFYVEQCPKIFPQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GATGCTCAACTAGCTGATTACTTCGATGTTGTCGCTGGAACGAGCACTGGTGGGCTGTTGACGGCCATGCTGACCGCCCCAAACCAGAATAACAGGCCGTTGTTTCGTGC
GTGCGAGTTGAAAGATTTTTATGTGGAACAATGCCCAAAAATCTTCCCACAGAAA
mRNA sequenceShow/hide mRNA sequence
GATGCTCAACTAGCTGATTACTTCGATGTTGTCGCTGGAACGAGCACTGGTGGGCTGTTGACGGCCATGCTGACCGCCCCAAACCAGAATAACAGGCCGTTGTTTCGTGC
GTGCGAGTTGAAAGATTTTTATGTGGAACAATGCCCAAAAATCTTCCCACAGAAA
Protein sequenceShow/hide protein sequence
DAQLADYFDVVAGTSTGGLLTAMLTAPNQNNRPLFRACELKDFYVEQCPKIFPQK