CuGenDBv2

Gene ID	MS021627
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	CCHC-type domain-containing protein
Genome location	scaffold320:267125..267665
RNA-Seq Expression	MS021627
Synteny	MS021627
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001878 - Zinc finger, CCHC-type IPR025558 - Domain of unknown function DUF4283 IPR040256 - Uncharacterized protein At4g02000-like

Homology

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GenBank top hits

e value

%identity

Alignment

KAG5219090.1 receptor protein [Salix suchowensis]

1.0e-45

49.72

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Query:  WRSSLIIKVLGKRFGYQFLLRRLIAIWQPKGEIKLISLSNDFFIV-LELSEDRDRVCLEGPWKILDHYLAVRSSSPKFRPSIATIDMATLWVRIPDCPME
        W+ +LIIK++G+R GY FL++RL  +W+ +G+  L  L N+F++     +EDR  V  EGPW + DHYL VR+  P F P  A+ID   +WVR+PD  ME
Subjt:  WRSSLIIKVLGKRFGYQFLLRRLIAIWQPKGEIKLISLSNDFFIV-LELSEDRDRVCLEGPWKILDHYLAVRSSSPKFRPSIATIDMATLWVRIPDCPME

Query:  LYNETGMKVIGDFTGKTLKIDLRTQSGEMGHFAKICVEVDLTKKLRPDFTILGGRYGIQYEGIHLVCFNCGLYGHSVEECP
         Y+ T +  IGD  GKTLKID  T  G  G FA++CVEVDLTK L   F +      I YEG+HLVCF CG YGH  E CP
Subjt:  LYNETGMKVIGDFTGKTLKIDLRTQSGEMGHFAKICVEVDLTKKLRPDFTILGGRYGIQYEGIHLVCFNCGLYGHSVEECP

XP_019200262.1 PREDICTED: uncharacterized protein LOC109193892 [Ipomoea nil]

1.7e-45

47.51

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Query:  WRSSLIIKVLGKRFGYQFLLRRLIAIWQPKGEIKLISLSNDFFIV-LELSEDRDRVCLEGPWKILDHYLAVRSSSPKFRPSIATIDMATLWVRIPDCPME
        WR  LIIKV GKR GY FL+R+L A+W+PKG  ++I++ ND+F+V     ED D    EGPW ILDHYL V+   P F P     +   +WVR P  P+E
Subjt:  WRSSLIIKVLGKRFGYQFLLRRLIAIWQPKGEIKLISLSNDFFIV-LELSEDRDRVCLEGPWKILDHYLAVRSSSPKFRPSIATIDMATLWVRIPDCPME

Query:  LYNETGMKVIGDFTGKTLKIDLRTQSGEMGHFAKICVEVDLTKKLRPDFTILGGRYGIQYEGIHLVCFNCGLYGHSVEECP
         Y+   ++ +GD  G+ +++D  T     G F +ICVE+D+TK L   FT+ G R  I YEG+HLVCF CG YGH+ E CP
Subjt:  LYNETGMKVIGDFTGKTLKIDLRTQSGEMGHFAKICVEVDLTKKLRPDFTILGGRYGIQYEGIHLVCFNCGLYGHSVEECP

XP_031099805.1 uncharacterized protein LOC116004003 [Ipomoea triloba]

2.7e-46

46.96

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Query:  WRSSLIIKVLGKRFGYQFLLRRLIAIWQPKGEIKLISLSNDFFIV-LELSEDRDRVCLEGPWKILDHYLAVRSSSPKFRPSIATIDMATLWVRIPDCPME
        WR +LIIKV+G+R GY +LLRRL  +W+PKG ++LI+L ND+F+V   + +D +    EGPW ILDHYL V+   P F P++ T +   +WV  P+ P+E
Subjt:  WRSSLIIKVLGKRFGYQFLLRRLIAIWQPKGEIKLISLSNDFFIV-LELSEDRDRVCLEGPWKILDHYLAVRSSSPKFRPSIATIDMATLWVRIPDCPME

Query:  LYNETGMKVIGDFTGKTLKIDLRTQSGEMGHFAKICVEVDLTKKLRPDFTILGGRYGIQYEGIHLVCFNCGLYGHSVEECP
         YN   ++ IG+  G+T+++D  T     G F ++CVE+D+TK L   FT+ G  + + YEGIHLVCF CG+YGH +E CP
Subjt:  LYNETGMKVIGDFTGKTLKIDLRTQSGEMGHFAKICVEVDLTKKLRPDFTILGGRYGIQYEGIHLVCFNCGLYGHSVEECP

XP_031124347.1 uncharacterized protein LOC116027061 [Ipomoea triloba]

2.3e-45

47.51

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Query:  WRSSLIIKVLGKRFGYQFLLRRLIAIWQPKGEIKLISLSNDFFIV-LELSEDRDRVCLEGPWKILDHYLAVRSSSPKFRPSIATIDMATLWVRIPDCPME
        WR SLI+ V+G+R GY +LLRRL ++W+PKG + LI+L ND+F+V     ED +    EGPW +LDHYL V+   P F P   T +   +WVR P  P+E
Subjt:  WRSSLIIKVLGKRFGYQFLLRRLIAIWQPKGEIKLISLSNDFFIV-LELSEDRDRVCLEGPWKILDHYLAVRSSSPKFRPSIATIDMATLWVRIPDCPME

Query:  LYNETGMKVIGDFTGKTLKIDLRTQSGEMGHFAKICVEVDLTKKLRPDFTILGGRYGIQYEGIHLVCFNCGLYGHSVEECP
         YN   ++ IG+  G+T+++D  T     G FA++CVE+D+TK L   FT+    + + YEGIHLVCF+CGLYGH  E CP
Subjt:  LYNETGMKVIGDFTGKTLKIDLRTQSGEMGHFAKICVEVDLTKKLRPDFTILGGRYGIQYEGIHLVCFNCGLYGHSVEECP

XP_031127559.1 uncharacterized protein LOC116029652 [Ipomoea triloba]

1.4e-47

48.62

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Query:  WRSSLIIKVLGKRFGYQFLLRRLIAIWQPKGEIKLISLSNDFFIV-LELSEDRDRVCLEGPWKILDHYLAVRSSSPKFRPSIATIDMATLWVRIPDCPME
        WR +LIIKV+G+R GY +LLRRL  +W+PKG ++LI+L ND+F+V   L ED +    EGPW  LDHYL V+   P F P++ T +   +WVR P+ P+E
Subjt:  WRSSLIIKVLGKRFGYQFLLRRLIAIWQPKGEIKLISLSNDFFIV-LELSEDRDRVCLEGPWKILDHYLAVRSSSPKFRPSIATIDMATLWVRIPDCPME

Query:  LYNETGMKVIGDFTGKTLKIDLRTQSGEMGHFAKICVEVDLTKKLRPDFTILGGRYGIQYEGIHLVCFNCGLYGHSVEECP
         YN   ++ IG+  G+T+++D  T     G FA++CVE+D+TK L   FT+ G  + + YEGIHLVCF CG+YGH +E CP
Subjt:  LYNETGMKVIGDFTGKTLKIDLRTQSGEMGHFAKICVEVDLTKKLRPDFTILGGRYGIQYEGIHLVCFNCGLYGHSVEECP

TrEMBL top hits

e value

%identity

Alignment

A0A392MA10 CCHC-type domain-containing protein (Fragment)

3.0e-43

45.86

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Query:  WRSSLIIKVLGKRFGYQFLLRRLIAIWQPKGEIKLISLSNDFFIV-LELSEDRDRVCLEGPWKILDHYLAVRSSSPKFRPSIATIDMATLWVRIPDCPME
        WR  +I+K+LG+R GY+ L  RL  +W  KG I +I LSND+++V     ED+    ++GPW I DHYL V+  SP F P+  TI    +WVRI   P+E
Subjt:  WRSSLIIKVLGKRFGYQFLLRRLIAIWQPKGEIKLISLSNDFFIV-LELSEDRDRVCLEGPWKILDHYLAVRSSSPKFRPSIATIDMATLWVRIPDCPME

Query:  LYNETGMKVIGDFTGKTLKIDLRTQSGEMGHFAKICVEVDLTKKLRPDFTILGGRYGIQYEGIHLVCFNCGLYGHSVEECP
         Y+   +  IG+  GKT+++D  T + E G +A++CVEVDLTK L   FTI G +Y ++YEG+HL+C  CG +GH  E CP
Subjt:  LYNETGMKVIGDFTGKTLKIDLRTQSGEMGHFAKICVEVDLTKKLRPDFTILGGRYGIQYEGIHLVCFNCGLYGHSVEECP

A0A445EMY8 Uncharacterized protein

3.9e-43

48.07

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Query:  WRSSLIIKVLGKRFGYQFLLRRLIAIWQPKGEIKLISLSNDFFIV--LELSEDRDRVCLEGPWKILDHYLAVRSSSPKFRPSIATIDMATLWVRIPDCPM
        W  +LIIK+LG+R GY  L +RL ++W  +G + LI + N+FF+V   EL ED +     GPW I DHYLAV+   P F PS+  +     WVRIPD P+
Subjt:  WRSSLIIKVLGKRFGYQFLLRRLIAIWQPKGEIKLISLSNDFFIV--LELSEDRDRVCLEGPWKILDHYLAVRSSSPKFRPSIATIDMATLWVRIPDCPM

Query:  ELYNETGMKVIGDFTGKTLKIDLRTQSGEMGHFAKICVEVDLTKKLRPDFTILGGRYGIQYEGIHLVCFNCGLYGHSVEEC
        E Y++  M+ IG+  GKTLKID  T     G FA+ICVE+DL K LRP F I G    ++YEG+H +CF+CG  GH+ E+C
Subjt:  ELYNETGMKVIGDFTGKTLKIDLRTQSGEMGHFAKICVEVDLTKKLRPDFTILGGRYGIQYEGIHLVCFNCGLYGHSVEEC

A0A6P4CJD6 uncharacterized protein LOC107477070

2.5e-45

46.41

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Query:  WRSSLIIKVLGKRFGYQFLLRRLIAIWQPKGEIKLISLSNDFFIV-LELSEDRDRVCLEGPWKILDHYLAVRSSSPKFRPSIATIDMATLWVRIPDCPME
        W  +LI+K+LG+R GY  + RRL+ +W  KG I +I L+ND+++V    +ED D   LEGPWK+ DHYL VR   P F P  A+ID  T W+R+P  P+E
Subjt:  WRSSLIIKVLGKRFGYQFLLRRLIAIWQPKGEIKLISLSNDFFIV-LELSEDRDRVCLEGPWKILDHYLAVRSSSPKFRPSIATIDMATLWVRIPDCPME

Query:  LYNETGMKVIGDFTGKTLKIDLRTQSGEMGHFAKICVEVDLTKKLRPDFTILGGRYGIQYEGIHLVCFNCGLYGHSVEECP
        +Y+ T ++ IG+  G+T+K+D  T     G FA++CVEVD+TK L   + I G  Y ++YEGIH +CFNCG   H    CP
Subjt:  LYNETGMKVIGDFTGKTLKIDLRTQSGEMGHFAKICVEVDLTKKLRPDFTILGGRYGIQYEGIHLVCFNCGLYGHSVEECP

A0A6P4CNW1 uncharacterized protein LOC107479006

2.7e-44

46.41

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Query:  WRSSLIIKVLGKRFGYQFLLRRLIAIWQPKGEIKLISLSNDFFIVLELS-EDRDRVCLEGPWKILDHYLAVRSSSPKFRPSIATIDMATLWVRIPDCPME
        W  S+I+K+LG+R     L RRL  +W   G I +I L NDFF+V   + ED D   +EGPWKILDHYL +R   P+F P  ATID    W+R+P   +E
Subjt:  WRSSLIIKVLGKRFGYQFLLRRLIAIWQPKGEIKLISLSNDFFIVLELS-EDRDRVCLEGPWKILDHYLAVRSSSPKFRPSIATIDMATLWVRIPDCPME

Query:  LYNETGMKVIGDFTGKTLKIDLRTQSGEMGHFAKICVEVDLTKKLRPDFTILGGRYGIQYEGIHLVCFNCGLYGHSVEECP
         YN T ++ IG+  G+T+KID+ T++   G +A+ICVE+DL+K L   + I G  + ++YEG+H+VCFNCG +GH    CP
Subjt:  LYNETGMKVIGDFTGKTLKIDLRTQSGEMGHFAKICVEVDLTKKLRPDFTILGGRYGIQYEGIHLVCFNCGLYGHSVEECP

A0A6P5MII7 uncharacterized protein LOC110274605

1.0e-43

45.3

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Query:  WRSSLIIKVLGKRFGYQFLLRRLIAIWQPKGEIKLISLSNDFFIV-LELSEDRDRVCLEGPWKILDHYLAVRSSSPKFRPSIATIDMATLWVRIPDCPME
        W ++LI+K+LG++ GY  + RRL  +W  KG + +I L  DF++V    +ED D   LEGPWK+ DHYL VR   P F P  ATID  T W+R+P  P+E
Subjt:  WRSSLIIKVLGKRFGYQFLLRRLIAIWQPKGEIKLISLSNDFFIV-LELSEDRDRVCLEGPWKILDHYLAVRSSSPKFRPSIATIDMATLWVRIPDCPME

Query:  LYNETGMKVIGDFTGKTLKIDLRTQSGEMGHFAKICVEVDLTKKLRPDFTILGGRYGIQYEGIHLVCFNCGLYGHSVEECP
        LY+   ++ IG+  G+T+K+D  T     G FA++CV+VDLTK L   + I G  Y ++YEGIH +CF+CG   H  ++CP
Subjt:  LYNETGMKVIGDFTGKTLKIDLRTQSGEMGHFAKICVEVDLTKKLRPDFTILGGRYGIQYEGIHLVCFNCGLYGHSVEECP

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G01050.1 zinc ion binding;nucleic acid binding

5.1e-35

35.91

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Query:  WRSSLIIKVLGKRFGYQFLLRRLIAIWQPKGEIKLISLSNDFFIV-LELSEDRDRVCLEGPWKILDHYLAVRSSSPKFRPSIATIDMATLWVRIPDCPME
        W+  +I+KVLG +     L R+L  +W+P G + ++ L   FF++  EL E+       GPW++L +YL V+  S +F P    I    +WVR+ + P  
Subjt:  WRSSLIIKVLGKRFGYQFLLRRLIAIWQPKGEIKLISLSNDFFIV-LELSEDRDRVCLEGPWKILDHYLAVRSSSPKFRPSIATIDMATLWVRIPDCPME

Query:  LYNETGMKVIGDFTGKTLKIDLRTQSGEMGHFAKICVEVDLTKKLRPDFTILGGRYGIQYEGIHLVCFNCGLYGHSVEECP
         Y+   +  I    G+ LK+D+ T + + G FA++C+EV+L K L+    I G RY + YEG+  +C +CG+YGH V  CP
Subjt:  LYNETGMKVIGDFTGKTLKIDLRTQSGEMGHFAKICVEVDLTKKLRPDFTILGGRYGIQYEGIHLVCFNCGLYGHSVEECP

Sequences

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CDS sequence

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TGGAGATCGTCTTTGATCATCAAAGTTCTCGGGAAAAGATTCGGTTATCAGTTTCTTCTACGAAGACTAATAGCAATTTGGCAGCCAAAAGGGGAAATCAAGCTAATCAG
TTTAAGTAATGATTTCTTTATCGTCTTGGAGTTGAGTGAGGATCGTGATCGTGTTTGTCTTGAGGGTCCATGGAAAATTCTTGACCATTACTTGGCCGTTCGGAGTTCGT
CTCCGAAGTTTAGACCTTCAATCGCGACTATCGATATGGCTACTTTATGGGTCCGGATTCCTGATTGCCCGATGGAACTCTACAATGAAACGGGAATGAAGGTAATTGGG
GACTTCACTGGTAAAACATTGAAAATTGATCTCAGAACTCAATCGGGAGAAATGGGTCATTTTGCGAAAATCTGTGTAGAAGTGGACCTAACCAAGAAACTCCGACCTGA
CTTCACGATTCTAGGAGGAAGATACGGTATTCAGTATGAGGGGATTCACCTTGTATGTTTTAATTGTGGGTTATATGGGCATAGTGTGGAAGAGTGTCCA

mRNA sequence

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Protein sequence

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WRSSLIIKVLGKRFGYQFLLRRLIAIWQPKGEIKLISLSNDFFIVLELSEDRDRVCLEGPWKILDHYLAVRSSSPKFRPSIATIDMATLWVRIPDCPMELYNETGMKVIG
DFTGKTLKIDLRTQSGEMGHFAKICVEVDLTKKLRPDFTILGGRYGIQYEGIHLVCFNCGLYGHSVEECP

MS021627 (gene) of Bitter gourd (TR) v1 genome