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MS021628 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS021628
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold320:268621..269127
RNA-Seq ExpressionMS021628
SyntenyMS021628
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PKI35403.1 hypothetical protein CRG98_044205, partial [Punica granatum]1.1e-4147.34Show/hide
Query:  AVGFKGGIWIFWQSRKVWLSEVSRHNQVFHFRFTKGIVFGLFTAIYGSPQWNTRKELWHFIETPIPEPLEPWLLLGDFNEILLEEEKQGGNPFNPISASL
        A GF GGIW++WQ   V ++   RH Q  H R ++      FTA+Y SP    R++LW  + T       PW++LGDFN IL   EK+GG PFNPI A+ 
Subjt:  AVGFKGGIWIFWQSRKVWLSEVSRHNQVFHFRFTKGIVFGLFTAIYGSPQWNTRKELWHFIETPIPEPLEPWLLLGDFNEILLEEEKQGGNPFNPISASL

Query:  FLDMMNKCQLMDLGSTCPKFTWRGALLQGHKRIFEKLDRGLVNVDWQIAFFETSIRVLPRVKSDHHPIL
        F + ++ C LMDL S+ P+FTW G +  G++R+FE+LDR + NV+W+  F + S+RVLPR+KSDHHP+L
Subjt:  FLDMMNKCQLMDLGSTCPKFTWRGALLQGHKRIFEKLDRGLVNVDWQIAFFETSIRVLPRVKSDHHPIL

PKI48862.1 hypothetical protein CRG98_030710 [Punica granatum]1.6e-3745.56Show/hide
Query:  AVGFKGGIWIFWQSRKVWLSEVSRHNQVFHFRFTKGIVFGLFTAIYGSPQWNTRKELWHFIETPIPEPLEPWLLLGDFNEILLEEEKQGGNPFNPISASL
        A GF GGIW+FW+S  V +  + R +Q  H     G    L T +YG    N R+ LW  ++        PWL++GDFNEIL   EK+GG  FNP  AS 
Subjt:  AVGFKGGIWIFWQSRKVWLSEVSRHNQVFHFRFTKGIVFGLFTAIYGSPQWNTRKELWHFIETPIPEPLEPWLLLGDFNEILLEEEKQGGNPFNPISASL

Query:  FLDMMNKCQLMDLGSTCPKFTWRGALLQGHKRIFEKLDRGLVNVDWQIAFFETSIRVLPRVKSDHHPIL
        F ++M +C L+D+GS+ P FTW G L  G +RIF++LDR L N  W+ +F E ++R+L R+ SDHHPIL
Subjt:  FLDMMNKCQLMDLGSTCPKFTWRGALLQGHKRIFEKLDRGLVNVDWQIAFFETSIRVLPRVKSDHHPIL

RYQ84474.1 hypothetical protein Ahy_B10g103821 [Arachis hypogaea]1.1e-3343.53Show/hide
Query:  AVGFKGGIWIFWQSRKVWLSEVSRHNQVFHFRFTKGIVFGLF-TAIYGSPQWNTRKELWHFIETPIPEPLEPWLLLGDFNEILLEEEKQGGNPFNPISAS
        AVGF GGIW+ W+   + +S +    Q  H    K      F TA+Y SP+   R+ELW+ I+        PWL++GDFNEI    EK+GG   +  +  
Subjt:  AVGFKGGIWIFWQSRKVWLSEVSRHNQVFHFRFTKGIVFGLF-TAIYGSPQWNTRKELWHFIETPIPEPLEPWLLLGDFNEILLEEEKQGGNPFNPISAS

Query:  LFLDMMNKCQLMDLGSTCPKFTWRGALLQGHKRIFEKLDRGLVNVDWQIAFFETSIRVLPRVKSDHHPIL
         F   + +C L+DLGS  PKFTWRG   +  +R+F++LDR L N DW+I F E  + VL RVKSDHHP+L
Subjt:  LFLDMMNKCQLMDLGSTCPKFTWRGALLQGHKRIFEKLDRGLVNVDWQIAFFETSIRVLPRVKSDHHPIL

XP_022137804.1 uncharacterized protein LOC111009151 [Momordica charantia]2.7e-4852.12Show/hide
Query:  KGGIWIFWQSRKVWLSEVSRHNQVFHFRFTKGIVFGLFTAIYGSPQWNTRKELWHFIETPIPEPLEPWLLLGDFNEILLEEEKQGGNPFNPISASLFLDM
        KGGIW+FW+  +V L EV+ + Q  HFRF +  + G FT +YGSPQ ++++ELW F+++ +P    PWLL+GDFN I   +EK G  P +P+ A+ FL  
Subjt:  KGGIWIFWQSRKVWLSEVSRHNQVFHFRFTKGIVFGLFTAIYGSPQWNTRKELWHFIETPIPEPLEPWLLLGDFNEILLEEEKQGGNPFNPISASLFLDM

Query:  MNKCQLMDLGSTCPKFTWRGALLQGHKRIFEKLDRGLVNVDWQIAFFETSIRVLPRVKSDHHPIL
        ++ CQL+DLGS+ PKFTW+G L+ G  R+FE+LDR L N  WQ+AF +TS+RVLP V SDHHPI+
Subjt:  MNKCQLMDLGSTCPKFTWRGALLQGHKRIFEKLDRGLVNVDWQIAFFETSIRVLPRVKSDHHPIL

XP_031402735.1 uncharacterized protein LOC116212324 [Punica granatum]1.1e-4147.34Show/hide
Query:  AVGFKGGIWIFWQSRKVWLSEVSRHNQVFHFRFTKGIVFGLFTAIYGSPQWNTRKELWHFIETPIPEPLEPWLLLGDFNEILLEEEKQGGNPFNPISASL
        A GF GGIW++WQ   V ++   RH Q  H R ++      FTA+Y SP    R++LW  + T       PW++LGDFN IL   EK+GG PFNPI A+ 
Subjt:  AVGFKGGIWIFWQSRKVWLSEVSRHNQVFHFRFTKGIVFGLFTAIYGSPQWNTRKELWHFIETPIPEPLEPWLLLGDFNEILLEEEKQGGNPFNPISASL

Query:  FLDMMNKCQLMDLGSTCPKFTWRGALLQGHKRIFEKLDRGLVNVDWQIAFFETSIRVLPRVKSDHHPIL
        F + ++ C LMDL S+ P+FTW G +  G++R+FE+LDR + NV+W+  F + S+RVLPR+KSDHHP+L
Subjt:  FLDMMNKCQLMDLGSTCPKFTWRGALLQGHKRIFEKLDRGLVNVDWQIAFFETSIRVLPRVKSDHHPIL

TrEMBL top hitse value%identityAlignment
A0A2I0HUV7 Reverse transcriptase domain-containing protein (Fragment)5.3e-4247.34Show/hide
Query:  AVGFKGGIWIFWQSRKVWLSEVSRHNQVFHFRFTKGIVFGLFTAIYGSPQWNTRKELWHFIETPIPEPLEPWLLLGDFNEILLEEEKQGGNPFNPISASL
        A GF GGIW++WQ   V ++   RH Q  H R ++      FTA+Y SP    R++LW  + T       PW++LGDFN IL   EK+GG PFNPI A+ 
Subjt:  AVGFKGGIWIFWQSRKVWLSEVSRHNQVFHFRFTKGIVFGLFTAIYGSPQWNTRKELWHFIETPIPEPLEPWLLLGDFNEILLEEEKQGGNPFNPISASL

Query:  FLDMMNKCQLMDLGSTCPKFTWRGALLQGHKRIFEKLDRGLVNVDWQIAFFETSIRVLPRVKSDHHPIL
        F + ++ C LMDL S+ P+FTW G +  G++R+FE+LDR + NV+W+  F + S+RVLPR+KSDHHP+L
Subjt:  FLDMMNKCQLMDLGSTCPKFTWRGALLQGHKRIFEKLDRGLVNVDWQIAFFETSIRVLPRVKSDHHPIL

A0A2I0IXX5 Uncharacterized protein7.9e-3845.56Show/hide
Query:  AVGFKGGIWIFWQSRKVWLSEVSRHNQVFHFRFTKGIVFGLFTAIYGSPQWNTRKELWHFIETPIPEPLEPWLLLGDFNEILLEEEKQGGNPFNPISASL
        A GF GGIW+FW+S  V +  + R +Q  H     G    L T +YG    N R+ LW  ++        PWL++GDFNEIL   EK+GG  FNP  AS 
Subjt:  AVGFKGGIWIFWQSRKVWLSEVSRHNQVFHFRFTKGIVFGLFTAIYGSPQWNTRKELWHFIETPIPEPLEPWLLLGDFNEILLEEEKQGGNPFNPISASL

Query:  FLDMMNKCQLMDLGSTCPKFTWRGALLQGHKRIFEKLDRGLVNVDWQIAFFETSIRVLPRVKSDHHPIL
        F ++M +C L+D+GS+ P FTW G L  G +RIF++LDR L N  W+ +F E ++R+L R+ SDHHPIL
Subjt:  FLDMMNKCQLMDLGSTCPKFTWRGALLQGHKRIFEKLDRGLVNVDWQIAFFETSIRVLPRVKSDHHPIL

A0A444X475 Endo/exonuclease/phosphatase domain-containing protein5.3e-3443.53Show/hide
Query:  AVGFKGGIWIFWQSRKVWLSEVSRHNQVFHFRFTKGIVFGLF-TAIYGSPQWNTRKELWHFIETPIPEPLEPWLLLGDFNEILLEEEKQGGNPFNPISAS
        AVGF GGIW+ W+   + +S +    Q  H    K      F TA+Y SP+   R+ELW+ I+        PWL++GDFNEI    EK+GG   +  +  
Subjt:  AVGFKGGIWIFWQSRKVWLSEVSRHNQVFHFRFTKGIVFGLF-TAIYGSPQWNTRKELWHFIETPIPEPLEPWLLLGDFNEILLEEEKQGGNPFNPISAS

Query:  LFLDMMNKCQLMDLGSTCPKFTWRGALLQGHKRIFEKLDRGLVNVDWQIAFFETSIRVLPRVKSDHHPIL
         F   + +C L+DLGS  PKFTWRG   +  +R+F++LDR L N DW+I F E  + VL RVKSDHHP+L
Subjt:  LFLDMMNKCQLMDLGSTCPKFTWRGALLQGHKRIFEKLDRGLVNVDWQIAFFETSIRVLPRVKSDHHPIL

A0A6J1C8B2 uncharacterized protein LOC1110091511.3e-4852.12Show/hide
Query:  KGGIWIFWQSRKVWLSEVSRHNQVFHFRFTKGIVFGLFTAIYGSPQWNTRKELWHFIETPIPEPLEPWLLLGDFNEILLEEEKQGGNPFNPISASLFLDM
        KGGIW+FW+  +V L EV+ + Q  HFRF +  + G FT +YGSPQ ++++ELW F+++ +P    PWLL+GDFN I   +EK G  P +P+ A+ FL  
Subjt:  KGGIWIFWQSRKVWLSEVSRHNQVFHFRFTKGIVFGLFTAIYGSPQWNTRKELWHFIETPIPEPLEPWLLLGDFNEILLEEEKQGGNPFNPISASLFLDM

Query:  MNKCQLMDLGSTCPKFTWRGALLQGHKRIFEKLDRGLVNVDWQIAFFETSIRVLPRVKSDHHPIL
        ++ CQL+DLGS+ PKFTW+G L+ G  R+FE+LDR L N  WQ+AF +TS+RVLP V SDHHPI+
Subjt:  MNKCQLMDLGSTCPKFTWRGALLQGHKRIFEKLDRGLVNVDWQIAFFETSIRVLPRVKSDHHPIL

A0A6P8E5K3 uncharacterized protein LOC1162123245.3e-4247.34Show/hide
Query:  AVGFKGGIWIFWQSRKVWLSEVSRHNQVFHFRFTKGIVFGLFTAIYGSPQWNTRKELWHFIETPIPEPLEPWLLLGDFNEILLEEEKQGGNPFNPISASL
        A GF GGIW++WQ   V ++   RH Q  H R ++      FTA+Y SP    R++LW  + T       PW++LGDFN IL   EK+GG PFNPI A+ 
Subjt:  AVGFKGGIWIFWQSRKVWLSEVSRHNQVFHFRFTKGIVFGLFTAIYGSPQWNTRKELWHFIETPIPEPLEPWLLLGDFNEILLEEEKQGGNPFNPISASL

Query:  FLDMMNKCQLMDLGSTCPKFTWRGALLQGHKRIFEKLDRGLVNVDWQIAFFETSIRVLPRVKSDHHPIL
        F + ++ C LMDL S+ P+FTW G +  G++R+FE+LDR + NV+W+  F + S+RVLPR+KSDHHP+L
Subjt:  FLDMMNKCQLMDLGSTCPKFTWRGALLQGHKRIFEKLDRGLVNVDWQIAFFETSIRVLPRVKSDHHPIL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCAGTTGGTTTTAAAGGAGGAATTTGGATTTTTTGGCAGTCTAGGAAGGTCTGGCTTTCTGAGGTTAGTCGTCATAATCAAGTGTTCCATTTTAGATTCACTAAAGGAAT
TGTGTTCGGGCTTTTTACTGCCATTTATGGAAGTCCTCAATGGAATACAAGGAAAGAACTATGGCATTTTATTGAAACTCCAATTCCGGAGCCATTGGAGCCTTGGTTGC
TCTTAGGGGATTTCAATGAAATCTTATTGGAGGAAGAGAAGCAAGGAGGAAATCCCTTCAATCCTATTTCAGCTTCCTTGTTTTTGGATATGATGAATAAATGTCAATTG
ATGGATCTCGGAAGCACGTGTCCAAAATTTACATGGAGAGGCGCTTTGTTGCAAGGTCATAAGAGAATTTTTGAAAAATTAGATAGAGGCCTAGTAAATGTGGATTGGCA
AATAGCCTTCTTCGAAACCTCCATTAGAGTGCTACCTCGTGTCAAGTCTGATCACCATCCAATTTTA
mRNA sequenceShow/hide mRNA sequence
GCAGTTGGTTTTAAAGGAGGAATTTGGATTTTTTGGCAGTCTAGGAAGGTCTGGCTTTCTGAGGTTAGTCGTCATAATCAAGTGTTCCATTTTAGATTCACTAAAGGAAT
TGTGTTCGGGCTTTTTACTGCCATTTATGGAAGTCCTCAATGGAATACAAGGAAAGAACTATGGCATTTTATTGAAACTCCAATTCCGGAGCCATTGGAGCCTTGGTTGC
TCTTAGGGGATTTCAATGAAATCTTATTGGAGGAAGAGAAGCAAGGAGGAAATCCCTTCAATCCTATTTCAGCTTCCTTGTTTTTGGATATGATGAATAAATGTCAATTG
ATGGATCTCGGAAGCACGTGTCCAAAATTTACATGGAGAGGCGCTTTGTTGCAAGGTCATAAGAGAATTTTTGAAAAATTAGATAGAGGCCTAGTAAATGTGGATTGGCA
AATAGCCTTCTTCGAAACCTCCATTAGAGTGCTACCTCGTGTCAAGTCTGATCACCATCCAATTTTA
Protein sequenceShow/hide protein sequence
AVGFKGGIWIFWQSRKVWLSEVSRHNQVFHFRFTKGIVFGLFTAIYGSPQWNTRKELWHFIETPIPEPLEPWLLLGDFNEILLEEEKQGGNPFNPISASLFLDMMNKCQL
MDLGSTCPKFTWRGALLQGHKRIFEKLDRGLVNVDWQIAFFETSIRVLPRVKSDHHPIL