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MS021629 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS021629
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold320:272722..273008
RNA-Seq ExpressionMS021629
SyntenyMS021629
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PRQ31932.1 putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein [Rosa chinensis]4.4e-1642.86Show/hide
Query:  ALPTYSMHVFRFPVSACKQLDQLCRNFWWGTQ-IKGLGHLVNWNLITKSKSVGGLGLHRFKDFNTTLLGKIGWGLIHRPHDLWAQVL-------------
        ALP Y M +F+FP S C Q++     FWWGT   KG+ H  +W+L+   KSVGGLG    +DFN  LL K GW L+  P   WAQVL             
Subjt:  ALPTYSMHVFRFPVSACKQLDQLCRNFWWGTQ-IKGLGHLVNWNLITKSKSVGGLGLHRFKDFNTTLLGKIGWGLIHRPHDLWAQVL-------------

Query:  ----SDSWLWNS
            S SW+W S
Subjt:  ----SDSWLWNS

PRQ57098.1 putative RNA-directed DNA polymerase [Rosa chinensis]4.4e-1642.86Show/hide
Query:  ALPTYSMHVFRFPVSACKQLDQLCRNFWWGTQ-IKGLGHLVNWNLITKSKSVGGLGLHRFKDFNTTLLGKIGWGLIHRPHDLWAQVL-------------
        ALP Y M +F+FP S C Q++     FWWGT   KG+ H  +W+L+   KSVGGLG    +DFN  LL K GW L+  P   WAQVL             
Subjt:  ALPTYSMHVFRFPVSACKQLDQLCRNFWWGTQ-IKGLGHLVNWNLITKSKSVGGLGLHRFKDFNTTLLGKIGWGLIHRPHDLWAQVL-------------

Query:  ----SDSWLWNS
            S SW+W S
Subjt:  ----SDSWLWNS

XP_018816058.1 uncharacterized protein LOC108987582 [Juglans regia]1.4e-1745.83Show/hide
Query:  QALPTYSMHVFRFPVSACKQLDQLCRNFWWG-TQIKGLGHLVNWNLITKSKSVGGLGLHRFKDFNTTLLGKIGWGLIHRPHDLWAQVLSDSWLWNS
        QA+PTY+M +FR P S  K+LDQLCR FWWG T+ +     V W+ +++ K  GGLG   F  FN  LL K GW ++H P+ L AQ+L   +  +S
Subjt:  QALPTYSMHVFRFPVSACKQLDQLCRNFWWG-TQIKGLGHLVNWNLITKSKSVGGLGLHRFKDFNTTLLGKIGWGLIHRPHDLWAQVLSDSWLWNS

XP_024200408.1 uncharacterized protein LOC112203717 [Rosa chinensis]4.4e-1642.86Show/hide
Query:  ALPTYSMHVFRFPVSACKQLDQLCRNFWWGTQ-IKGLGHLVNWNLITKSKSVGGLGLHRFKDFNTTLLGKIGWGLIHRPHDLWAQVL-------------
        ALP Y M +F+FP S C Q++     FWWGT   KG+ H  +W+L+   KSVGGLG    +DFN  LL K GW L+  P   WAQVL             
Subjt:  ALPTYSMHVFRFPVSACKQLDQLCRNFWWGTQ-IKGLGHLVNWNLITKSKSVGGLGLHRFKDFNTTLLGKIGWGLIHRPHDLWAQVL-------------

Query:  ----SDSWLWNS
            S SW+W S
Subjt:  ----SDSWLWNS

XP_040372300.1 uncharacterized protein LOC112166037 [Rosa chinensis]4.4e-1642.86Show/hide
Query:  ALPTYSMHVFRFPVSACKQLDQLCRNFWWGTQ-IKGLGHLVNWNLITKSKSVGGLGLHRFKDFNTTLLGKIGWGLIHRPHDLWAQVL-------------
        ALP Y M +F+FP S C Q++     FWWGT   KG+ H  +W+L+   KSVGGLG    +DFN  LL K GW L+  P   WAQVL             
Subjt:  ALPTYSMHVFRFPVSACKQLDQLCRNFWWGTQ-IKGLGHLVNWNLITKSKSVGGLGLHRFKDFNTTLLGKIGWGLIHRPHDLWAQVL-------------

Query:  ----SDSWLWNS
            S SW+W S
Subjt:  ----SDSWLWNS

TrEMBL top hitse value%identityAlignment
A0A2I4E9H8 uncharacterized protein LOC1089875826.7e-1845.83Show/hide
Query:  QALPTYSMHVFRFPVSACKQLDQLCRNFWWG-TQIKGLGHLVNWNLITKSKSVGGLGLHRFKDFNTTLLGKIGWGLIHRPHDLWAQVLSDSWLWNS
        QA+PTY+M +FR P S  K+LDQLCR FWWG T+ +     V W+ +++ K  GGLG   F  FN  LL K GW ++H P+ L AQ+L   +  +S
Subjt:  QALPTYSMHVFRFPVSACKQLDQLCRNFWWG-TQIKGLGHLVNWNLITKSKSVGGLGLHRFKDFNTTLLGKIGWGLIHRPHDLWAQVLSDSWLWNS

A0A2P6QCP1 Putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein2.2e-1642.86Show/hide
Query:  ALPTYSMHVFRFPVSACKQLDQLCRNFWWGTQ-IKGLGHLVNWNLITKSKSVGGLGLHRFKDFNTTLLGKIGWGLIHRPHDLWAQVL-------------
        ALP Y M +F+FP S C Q++     FWWGT   KG+ H  +W+L+   KSVGGLG    +DFN  LL K GW L+  P   WAQVL             
Subjt:  ALPTYSMHVFRFPVSACKQLDQLCRNFWWGTQ-IKGLGHLVNWNLITKSKSVGGLGLHRFKDFNTTLLGKIGWGLIHRPHDLWAQVL-------------

Query:  ----SDSWLWNS
            S SW+W S
Subjt:  ----SDSWLWNS

A0A2P6SEJ0 Putative RNA-directed DNA polymerase2.2e-1642.86Show/hide
Query:  ALPTYSMHVFRFPVSACKQLDQLCRNFWWGTQ-IKGLGHLVNWNLITKSKSVGGLGLHRFKDFNTTLLGKIGWGLIHRPHDLWAQVL-------------
        ALP Y M +F+FP S C Q++     FWWGT   KG+ H  +W+L+   KSVGGLG    +DFN  LL K GW L+  P   WAQVL             
Subjt:  ALPTYSMHVFRFPVSACKQLDQLCRNFWWGTQ-IKGLGHLVNWNLITKSKSVGGLGLHRFKDFNTTLLGKIGWGLIHRPHDLWAQVL-------------

Query:  ----SDSWLWNS
            S SW+W S
Subjt:  ----SDSWLWNS

A0A2P6SF89 Putative RNA-directed DNA polymerase1.8e-1545.35Show/hide
Query:  ALPTYSMHVFRFPVSACKQLDQLCRNFWWGTQIKGLGHLVNWNLITKSKSVGGLGLHRFKDFNTTLLGKIGWGLIHRPHDLWAQVL
        A+P Y M  F+FPVS C QL+ +  NFWWG Q     H  +WN ++  K  GG+G     +FN +LL K  W L H P  LWA+VL
Subjt:  ALPTYSMHVFRFPVSACKQLDQLCRNFWWGTQIKGLGHLVNWNLITKSKSVGGLGLHRFKDFNTTLLGKIGWGLIHRPHDLWAQVL

M5W7G7 Uncharacterized protein (Fragment)2.4e-1541.05Show/hide
Query:  QALPTYSMHVFRFPVSACKQLDQLCRNFWWG-TQIKGLGHLVNWNLITKSKSVGGLGLHRFKDFNTTLLGKIGWGLIHRPHDLWAQVLSDSWLWN
        QA+P+Y M VF FP S C+++D +  NFWWG +Q     H ++W  +   K+ GG+G    KDFN  LL K GW ++  P   WAQ+L   +  N
Subjt:  QALPTYSMHVFRFPVSACKQLDQLCRNFWWG-TQIKGLGHLVNWNLITKSKSVGGLGLHRFKDFNTTLLGKIGWGLIHRPHDLWAQVLSDSWLWN

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657504.8e-1338.46Show/hide
Query:  ALPTYSMHVFRFPVSACKQLDQLCRNFWWG-TQIKGLGHLVNWNLITKSKSVGGLGLHRFKDFNTTLLGKIGWGLIHRPHDLWAQVLSDSW
        ++P +SM     P S   +LDQL R F WG T  K   HLV W+ +   K  GGLG+   K  N  L+ K+GW L+   + LW  VL   +
Subjt:  ALPTYSMHVFRFPVSACKQLDQLCRNFWWG-TQIKGLGHLVNWNLITKSKSVGGLGLHRFKDFNTTLLGKIGWGLIHRPHDLWAQVLSDSW

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CAGGCCTTACCTACTTATTCTATGCATGTTTTTCGTTTTCCAGTTTCTGCTTGCAAACAACTTGATCAATTATGTAGGAATTTTTGGTGGGGCACACAAATCAAAGGTCT
AGGACATTTAGTCAATTGGAATCTGATCACTAAGTCCAAATCTGTAGGAGGTCTTGGATTACATCGATTCAAGGATTTTAACACAACTCTTCTTGGGAAAATTGGATGGG
GTTTAATCCATAGGCCACATGACCTCTGGGCCCAGGTTCTGAGTGACTCTTGGCTGTGGAACTCA
mRNA sequenceShow/hide mRNA sequence
CAGGCCTTACCTACTTATTCTATGCATGTTTTTCGTTTTCCAGTTTCTGCTTGCAAACAACTTGATCAATTATGTAGGAATTTTTGGTGGGGCACACAAATCAAAGGTCT
AGGACATTTAGTCAATTGGAATCTGATCACTAAGTCCAAATCTGTAGGAGGTCTTGGATTACATCGATTCAAGGATTTTAACACAACTCTTCTTGGGAAAATTGGATGGG
GTTTAATCCATAGGCCACATGACCTCTGGGCCCAGGTTCTGAGTGACTCTTGGCTGTGGAACTCA
Protein sequenceShow/hide protein sequence
QALPTYSMHVFRFPVSACKQLDQLCRNFWWGTQIKGLGHLVNWNLITKSKSVGGLGLHRFKDFNTTLLGKIGWGLIHRPHDLWAQVLSDSWLWNS