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MS021642 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS021642
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPhotosystem I assembly protein Ycf4
Genome locationscaffold348:9586..9762
RNA-Seq ExpressionMS021642
SyntenyMS021642
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009522 - photosystem I (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR003359 - Photosystem I Ycf4, assembly


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ASY96369.1 photosystem I assembly protein Ycf4 [Cucumis melo subsp. agrestis]8.9e-23100Show/hide
Query:  IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
        IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
Subjt:  IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
YP_009560846.1 Ycf4 [Trichosanthes kirilowii]8.9e-23100Show/hide
Query:  IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
        IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
Subjt:  IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
YP_009752086.1 photosystem I assembly protein Ycf4 [Dendrosicyos socotranus]8.9e-23100Show/hide
Query:  IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
        IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
Subjt:  IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
YP_009752592.1 photosystem I assembly protein Ycf4 [Trichosanthes homophylla]8.9e-23100Show/hide
Query:  IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
        IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
Subjt:  IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
YP_247610.1 photosystem I assembly protein Ycf4 [Cucumis sativus]8.9e-23100Show/hide
Query:  IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
        IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
Subjt:  IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
TrEMBL top hitse value%identityAlignment
A0A1S4EU22 Photosystem I assembly protein Ycf44.3e-23100Show/hide
Query:  IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
        IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
Subjt:  IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
A0A1X9Q1L1 Photosystem I assembly protein Ycf44.3e-23100Show/hide
Query:  IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
        IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
Subjt:  IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
A0A218KG38 Photosystem I assembly protein Ycf44.3e-23100Show/hide
Query:  IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
        IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
Subjt:  IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
A0A249S031 Photosystem I assembly protein Ycf44.3e-23100Show/hide
Query:  IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
        IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
Subjt:  IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
A0A6H0ESZ3 Photosystem I assembly protein Ycf44.3e-23100Show/hide
Query:  IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
        IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
Subjt:  IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
SwissProt top hitse value%identityAlignment
A0ZZ46 Photosystem I assembly protein Ycf43.4e-2596.61Show/hide
Query:  IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
        IQSIRIEVKEGIYARRVLYMEIRGQGA+PLTRTD+NLTPREIEQKAAELAYFLRVPIEV
Subjt:  IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
A4GYS2 Photosystem I assembly protein Ycf47.5e-2596.61Show/hide
Query:  IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
        IQSIRIEVKEG YARRVLYMEIRGQGAIPLTRTD+NLTPREIEQKAAELAYFLRVPIEV
Subjt:  IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
Q14FE6 Photosystem I assembly protein Ycf47.5e-2596.61Show/hide
Query:  IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
        IQSIRIEVKEG YARRVLYMEIRGQGAIPLTRTD+NLTPREIEQKAAELAYFLRVPIEV
Subjt:  IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
Q2L913 Photosystem I assembly protein Ycf43.4e-2596.61Show/hide
Query:  IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
        IQSIRIEVKEGIYARRVLYMEIRGQGA+PLTRTD+NLTPREIEQKAAELAYFLRVPIEV
Subjt:  IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
Q2QD78 Photosystem I assembly protein Ycf41.2e-25100Show/hide
Query:  IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
        IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
Subjt:  IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
Arabidopsis top hitse value%identityAlignment
ATCG00520.1 unfolded protein binding3.2e-2389.83Show/hide
Query:  IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
        IQSIRIEVKEG+ ARRVLYMEIRGQGAIPL RTD+N T REIEQKAAELAYFLRVPIEV
Subjt:  IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTCAGTCCATTAGAATAGAAGTTAAAGAGGGTATTTATGCACGTCGTGTCCTTTATATGGAAATCAGAGGCCAAGGGGCCATTCCCTTGACTCGTACCGATCAGAATCT
GACCCCACGAGAAATTGAGCAAAAGGCTGCCGAATTGGCCTATTTCTTGCGTGTACCAATTGAAGTT
mRNA sequenceShow/hide mRNA sequence
ATTCAGTCCATTAGAATAGAAGTTAAAGAGGGTATTTATGCACGTCGTGTCCTTTATATGGAAATCAGAGGCCAAGGGGCCATTCCCTTGACTCGTACCGATCAGAATCT
GACCCCACGAGAAATTGAGCAAAAGGCTGCCGAATTGGCCTATTTCTTGCGTGTACCAATTGAAGTT
Protein sequenceShow/hide protein sequence
IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV