CuGenDBv2

Gene ID	MS021687
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	DDE Tnp4 domain-containing protein
Genome location	scaffold348:329612..330261
RNA-Seq Expression	MS021687
Synteny	MS021687
Gene Ontology terms	GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR040344 - Uncharacterized protein At3g17950-like

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6584313.1 hypothetical protein SDJN03_20245, partial [Cucurbita argyrosperma subsp. sororia]

1.9e-87

92.59

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Query:  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRAPSQNRDQHAGAAAAAAGPSRRSKKPKRKTTAAPALVADRKRRWW
        MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFR PSQNRDQHA A AAA G SR+SKKPKRKTTAAPALVADRKRRWW
Subjt:  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRAPSQNRDQHAGAAAAAAGPSRRSKKPKRKTTAAPALVADRKRRWW

Query:  RLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVV--DQQRNGRMLFADGRVLPPPPQTEEDASAAGALCRFSVSLTGICSGGAG
        RLCRDDGVKPASLGEFLEVERRFGDGAF+GNAVDLEGVV  DQQRNGR LFADGRVL PP QT+ED SAAGALCRFSVSLTGICSGGAG
Subjt:  RLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVV--DQQRNGRMLFADGRVLPPPPQTEEDASAAGALCRFSVSLTGICSGGAG

XP_022137456.1 uncharacterized protein At3g17950 [Momordica charantia]

2.0e-97

100

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Query:  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRAPSQNRDQHAGAAAAAAGPSRRSKKPKRKTTAAPALVADRKRRWW
        MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRAPSQNRDQHAGAAAAAAGPSRRSKKPKRKTTAAPALVADRKRRWW
Subjt:  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRAPSQNRDQHAGAAAAAAGPSRRSKKPKRKTTAAPALVADRKRRWW

Query:  RLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVVDQQRNGRMLFADGRVLPPPPQTEEDASAAGALCRFSVSLTGICSGGAG
        RLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVVDQQRNGRMLFADGRVLPPPPQTEEDASAAGALCRFSVSLTGICSGGAG
Subjt:  RLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVVDQQRNGRMLFADGRVLPPPPQTEEDASAAGALCRFSVSLTGICSGGAG

XP_022924210.1 uncharacterized protein At3g17950 [Cucurbita moschata]

8.6e-88

93.12

Show/hide

Query:  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRAPSQNRDQHAGAAAAAAGPSRRSKKPKRKTTAAPALVADRKRRWW
        MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFR PSQNRDQHA A AAA G SR+SKKPKRKTTAAPALVADRKRRWW
Subjt:  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRAPSQNRDQHAGAAAAAAGPSRRSKKPKRKTTAAPALVADRKRRWW

Query:  RLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVV--DQQRNGRMLFADGRVLPPPPQTEEDASAAGALCRFSVSLTGICSGGAG
        RLCRDDGVKPASLGEFLEVERRFGDGAF+GNAVDLEGVV  DQQRNGR LFADGRVL PP QTEED SAAGALCRFSVSLTGICSGGAG
Subjt:  RLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVV--DQQRNGRMLFADGRVLPPPPQTEEDASAAGALCRFSVSLTGICSGGAG

XP_023001809.1 uncharacterized protein At3g17950-like [Cucurbita maxima]

8.0e-86

91.53

Show/hide

Query:  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRAPSQNRDQHAGAAAAAAGPSRRSKKPKRKTTAAPALVADRKRRWW
        MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFR PSQNRDQH  A  AA G SR+SKKPKRKTTAAPALVADRKRRWW
Subjt:  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRAPSQNRDQHAGAAAAAAGPSRRSKKPKRKTTAAPALVADRKRRWW

Query:  RLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVV--DQQRNGRMLFADGRVLPPPPQTEEDASAAGALCRFSVSLTGICSGGAG
        RLCRDDGVKPASLGEFLEVERRFGDGAF+ NAVDLEGVV  DQQRNGR LFADGRVL PP QTEED SAAGALCRFSVSLTGICSGGAG
Subjt:  RLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVV--DQQRNGRMLFADGRVLPPPPQTEEDASAAGALCRFSVSLTGICSGGAG

XP_023520118.1 uncharacterized protein At3g17950-like [Cucurbita pepo subsp. pepo]

1.9e-87

92.59

Show/hide

Query:  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRAPSQNRDQHAGAAAAAAGPSRRSKKPKRKTTAAPALVADRKRRWW
        MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFR PSQNRDQH+ A AAA G SR+SKKPKRKTTAAPALVADRKRRWW
Subjt:  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRAPSQNRDQHAGAAAAAAGPSRRSKKPKRKTTAAPALVADRKRRWW

Query:  RLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVV--DQQRNGRMLFADGRVLPPPPQTEEDASAAGALCRFSVSLTGICSGGAG
        RLCRDDGVKPASLGEFLEVERRFGDGAF+GNAVDLEGVV  DQQRNGR LFADGRVL PP QTEED SAAGALCRFSVSLTGICSGGAG
Subjt:  RLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVV--DQQRNGRMLFADGRVLPPPPQTEEDASAAGALCRFSVSLTGICSGGAG

TrEMBL top hits

e value

%identity

Alignment

A0A1S4DUB1 uncharacterized protein At3g17950 isoform X2

2.5e-85

90.48

Show/hide

Query:  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRAPSQNRDQHAGAAAAAAGPSRRSKKPKRKTTAAPALVADRKRRWW
        MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFR PSQNRDQH  A   A G SR+SKK KRKTT APALVADRKRRWW
Subjt:  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRAPSQNRDQHAGAAAAAAGPSRRSKKPKRKTTAAPALVADRKRRWW

Query:  RLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVV--DQQRNGRMLFADGRVLPPPPQTEEDASAAGALCRFSVSLTGICSGGAG
        RLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVV  DQQRNGR LFADGRVL PP QTEED SA GALCRFSVSLTGICSGGAG
Subjt:  RLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVV--DQQRNGRMLFADGRVLPPPPQTEEDASAAGALCRFSVSLTGICSGGAG

A0A5D3BLI7 Putative nuclease HARBI1

2.5e-85

90.48

Show/hide

Query:  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRAPSQNRDQHAGAAAAAAGPSRRSKKPKRKTTAAPALVADRKRRWW
        MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFR PSQNRDQH  A   A G SR+SKK KRKTT APALVADRKRRWW
Subjt:  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRAPSQNRDQHAGAAAAAAGPSRRSKKPKRKTTAAPALVADRKRRWW

Query:  RLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVV--DQQRNGRMLFADGRVLPPPPQTEEDASAAGALCRFSVSLTGICSGGAG
        RLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVV  DQQRNGR LFADGRVL PP QTEED SA GALCRFSVSLTGICSGGAG
Subjt:  RLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVV--DQQRNGRMLFADGRVLPPPPQTEEDASAAGALCRFSVSLTGICSGGAG

A0A6J1C6N6 uncharacterized protein At3g17950

9.9e-98

100

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Query:  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRAPSQNRDQHAGAAAAAAGPSRRSKKPKRKTTAAPALVADRKRRWW
        MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRAPSQNRDQHAGAAAAAAGPSRRSKKPKRKTTAAPALVADRKRRWW
Subjt:  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRAPSQNRDQHAGAAAAAAGPSRRSKKPKRKTTAAPALVADRKRRWW

Query:  RLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVVDQQRNGRMLFADGRVLPPPPQTEEDASAAGALCRFSVSLTGICSGGAG
        RLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVVDQQRNGRMLFADGRVLPPPPQTEEDASAAGALCRFSVSLTGICSGGAG
Subjt:  RLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVVDQQRNGRMLFADGRVLPPPPQTEEDASAAGALCRFSVSLTGICSGGAG

A0A6J1E8Y2 uncharacterized protein At3g17950

4.2e-88

93.12

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Query:  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRAPSQNRDQHAGAAAAAAGPSRRSKKPKRKTTAAPALVADRKRRWW
        MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFR PSQNRDQHA A AAA G SR+SKKPKRKTTAAPALVADRKRRWW
Subjt:  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRAPSQNRDQHAGAAAAAAGPSRRSKKPKRKTTAAPALVADRKRRWW

Query:  RLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVV--DQQRNGRMLFADGRVLPPPPQTEEDASAAGALCRFSVSLTGICSGGAG
        RLCRDDGVKPASLGEFLEVERRFGDGAF+GNAVDLEGVV  DQQRNGR LFADGRVL PP QTEED SAAGALCRFSVSLTGICSGGAG
Subjt:  RLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVV--DQQRNGRMLFADGRVLPPPPQTEEDASAAGALCRFSVSLTGICSGGAG

A0A6J1KNQ0 uncharacterized protein At3g17950-like

3.9e-86

91.53

Show/hide

Query:  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRAPSQNRDQHAGAAAAAAGPSRRSKKPKRKTTAAPALVADRKRRWW
        MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFR PSQNRDQH  A  AA G SR+SKKPKRKTTAAPALVADRKRRWW
Subjt:  MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRAPSQNRDQHAGAAAAAAGPSRRSKKPKRKTTAAPALVADRKRRWW

Query:  RLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVV--DQQRNGRMLFADGRVLPPPPQTEEDASAAGALCRFSVSLTGICSGGAG
        RLCRDDGVKPASLGEFLEVERRFGDGAF+ NAVDLEGVV  DQQRNGR LFADGRVL PP QTEED SAAGALCRFSVSLTGICSGGAG
Subjt:  RLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVV--DQQRNGRMLFADGRVLPPPPQTEEDASAAGALCRFSVSLTGICSGGAG

SwissProt top hits

e value

%identity

Alignment

Q6DR24 Uncharacterized protein At3g17950

7.9e-36

51.22

Show/hide

Query:  PSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPA---ITFRAPSQNR-DQHAGAAAAAAGPSRRSKKPKRKTTAAPALVADRKRRWWRLCRDD-
        PSSPT SS+SSSDLDTESTGSFFHDRS +LGTLMG SF A   + FRA S+         + A++  +RR+ + KR  + +      R+R+WWR CRDD 
Subjt:  PSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPA---ITFRAPSQNR-DQHAGAAAAAAGPSRRSKKPKRKTTAAPALVADRKRRWWRLCRDD-

Query:  ------GV-------KPASLGEFLEVERRFGDGAFYGNA-VDLEGVV-----DQQ--RNGRMLFADGRVLPPPPQ---TEEDASAAGALCRFSVSLTGIC
              G+       K +SLGE+LEVERRFGD A Y +A  +LE  V     DQQ     R LFADGRVLPP      T E    A +LCRF VSLTGIC
Subjt:  ------GV-------KPASLGEFLEVERRFGDGAFYGNA-VDLEGVV-----DQQ--RNGRMLFADGRVLPPPPQ---TEEDASAAGALCRFSVSLTGIC

Query:  SGGAG
        SGG G
Subjt:  SGGAG

Arabidopsis top hits

e value

%identity

Alignment

AT3G17950.1 unknown protein

5.6e-37

51.22

Show/hide

Query:  PSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPA---ITFRAPSQNR-DQHAGAAAAAAGPSRRSKKPKRKTTAAPALVADRKRRWWRLCRDD-
        PSSPT SS+SSSDLDTESTGSFFHDRS +LGTLMG SF A   + FRA S+         + A++  +RR+ + KR  + +      R+R+WWR CRDD 
Subjt:  PSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPA---ITFRAPSQNR-DQHAGAAAAAAGPSRRSKKPKRKTTAAPALVADRKRRWWRLCRDD-

Query:  ------GV-------KPASLGEFLEVERRFGDGAFYGNA-VDLEGVV-----DQQ--RNGRMLFADGRVLPPPPQ---TEEDASAAGALCRFSVSLTGIC
              G+       K +SLGE+LEVERRFGD A Y +A  +LE  V     DQQ     R LFADGRVLPP      T E    A +LCRF VSLTGIC
Subjt:  ------GV-------KPASLGEFLEVERRFGDGAFYGNA-VDLEGVV-----DQQ--RNGRMLFADGRVLPPPPQ---TEEDASAAGALCRFSVSLTGIC

Query:  SGGAG
        SGG G
Subjt:  SGGAG

AT3G17950.2 unknown protein

1.5e-21

44.19

Show/hide

Query:  MGVSFPA---ITFRAPSQNR-DQHAGAAAAAAGPSRRSKKPKRKTTAAPALVADRKRRWWRLCRDD-------GV-------KPASLGEFLEVERRFGDG
        MG SF A   + FRA S+         + A++  +RR+ + KR  + +      R+R+WWR CRDD       G+       K +SLGE+LEVERRFGD 
Subjt:  MGVSFPA---ITFRAPSQNR-DQHAGAAAAAAGPSRRSKKPKRKTTAAPALVADRKRRWWRLCRDD-------GV-------KPASLGEFLEVERRFGDG

Query:  AFYGNA-VDLEGVV-----DQQ--RNGRMLFADGRVLPPPPQ---TEEDASAAGALCRFSVSLTGICSGGAG
        A Y +A  +LE  V     DQQ     R LFADGRVLPP      T E    A +LCRF VSLTGICSGG G
Subjt:  AFYGNA-VDLEGVV-----DQQ--RNGRMLFADGRVLPPPPQ---TEEDASAAGALCRFSVSLTGICSGGAG

AT5G02440.1 unknown protein

1.5e-05

50.91

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Query:  SPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRAPSQNRDQHAGAA
        SP+ SS SSSDLD++S GSFF DRS +LG L+G+S      R  ++ R+   GAA
Subjt:  SPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRAPSQNRDQHAGAA

Sequences

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CDS sequence

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ATGTTGAATCCGGCGAACGATCTGTTACCCCCGCCGTCTTCTCCAACCAATTCATCCATCTCCTCCTCCGATCTCGACACTGAGTCTACAGGTTCGTTTTTCCATGATAG
GAGCACGAGCTTGGGGACTCTAATGGGCGTCAGTTTTCCGGCGATAACCTTCCGAGCGCCGTCACAGAACCGAGACCAACACGCCGGCGCAGCCGCCGCCGCCGCCGGCC
CTTCCCGCAGGAGCAAGAAGCCGAAGAGGAAAACCACGGCGGCGCCGGCACTCGTCGCGGATCGGAAGCGGAGGTGGTGGCGGCTGTGCCGGGACGACGGCGTTAAGCCG
GCATCTCTCGGCGAGTTTCTCGAGGTCGAACGGAGATTTGGGGACGGTGCTTTCTACGGTAACGCGGTGGATCTGGAAGGCGTGGTAGATCAACAGAGGAATGGGCGAAT
GTTGTTCGCCGACGGGAGAGTGCTTCCGCCGCCGCCGCAAACGGAGGAAGACGCGTCGGCGGCCGGCGCTCTCTGCCGGTTTTCCGTATCGCTCACCGGGATTTGCAGCG
GCGGTGCCGGC

mRNA sequence

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Protein sequence

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MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRAPSQNRDQHAGAAAAAAGPSRRSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKP
ASLGEFLEVERRFGDGAFYGNAVDLEGVVDQQRNGRMLFADGRVLPPPPQTEEDASAAGALCRFSVSLTGICSGGAG

MS021687 (gene) of Bitter gourd (TR) v1 genome