; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS021711 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS021711
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase
Genome locationscaffold566:70860..71018
RNA-Seq ExpressionMS021711
SyntenyMS021711
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3467739.1 reverse transcriptase [Gossypium australe]4.0e-0652.83Show/hide
Query:  FKGWKALCVSKFKGGLDLRYLELFNKVLLAKQDWQIMAKLNSLLALALKGKYF
        + GW  LC+SKF GGL  + L LFNK LLAKQ W+++ +   LLA  LK +YF
Subjt:  FKGWKALCVSKFKGGLDLRYLELFNKVLLAKQDWQIMAKLNSLLALALKGKYF
XP_022145148.1 uncharacterized protein LOC111014662 [Momordica charantia]2.3e-0658Show/hide
Query:  WKALCVSKFKGGLDLRYLELFNKVLLAKQDWQIMAKLNSLLALALKGKYF
        WK LCVSK +GGL  + L +FN+ +LAKQ WQI+   NSLL   L+GKYF
Subjt:  WKALCVSKFKGGLDLRYLELFNKVLLAKQDWQIMAKLNSLLALALKGKYF
XP_030477992.1 uncharacterized protein LOC115695034 [Cannabis sativa]3.0e-0658.49Show/hide
Query:  FKGWKALCVSKFKGGLDLRYLELFNKVLLAKQDWQIMAKLNSLLALALKGKYF
        +K WKALC SKF GGL  R L  FN+ +LAKQ W+IM   NSLL+  LK +YF
Subjt:  FKGWKALCVSKFKGGLDLRYLELFNKVLLAKQDWQIMAKLNSLLALALKGKYF
XP_030479177.1 uncharacterized protein LOC115696415 [Cannabis sativa]4.7e-0756.6Show/hide
Query:  FKGWKALCVSKFKGGLDLRYLELFNKVLLAKQDWQIMAKLNSLLALALKGKYF
        +K WK+LC SKF+GGL  R L  FN+ +LAKQ W+I    NSLL+L LK +YF
Subjt:  FKGWKALCVSKFKGGLDLRYLELFNKVLLAKQDWQIMAKLNSLLALALKGKYF
XP_030502376.1 uncharacterized protein LOC115717528 [Cannabis sativa]4.7e-0758.49Show/hide
Query:  FKGWKALCVSKFKGGLDLRYLELFNKVLLAKQDWQIMAKLNSLLALALKGKYF
        +K WK LC SKFKGGL  R L  FN+ +LAKQ W+I    NSLL+L LK +YF
Subjt:  FKGWKALCVSKFKGGLDLRYLELFNKVLLAKQDWQIMAKLNSLLALALKGKYF
TrEMBL top hitse value%identityAlignment
A0A803NFC8 Uncharacterized protein2.3e-0758.49Show/hide
Query:  FKGWKALCVSKFKGGLDLRYLELFNKVLLAKQDWQIMAKLNSLLALALKGKYF
        +K WK LC SKFKGGL  R L  FN+ +LAKQ W+I    NSLL+L LK +YF
Subjt:  FKGWKALCVSKFKGGLDLRYLELFNKVLLAKQDWQIMAKLNSLLALALKGKYF
A0A803P2U6 Uncharacterized protein5.1e-0752.83Show/hide
Query:  FKGWKALCVSKFKGGLDLRYLELFNKVLLAKQDWQIMAKLNSLLALALKGKYF
        +K WK++C SKF+GGL  R L  FN+ +LAKQ W++    NSLL+L LK +YF
Subjt:  FKGWKALCVSKFKGGLDLRYLELFNKVLLAKQDWQIMAKLNSLLALALKGKYF
A0A803PL44 Uncharacterized protein1.3e-0756.6Show/hide
Query:  FKGWKALCVSKFKGGLDLRYLELFNKVLLAKQDWQIMAKLNSLLALALKGKYF
        +K WK LC SKF+GGL  R L  FN+ +LAKQ W+I+   NSLL+L LK +YF
Subjt:  FKGWKALCVSKFKGGLDLRYLELFNKVLLAKQDWQIMAKLNSLLALALKGKYF
A0A803PU82 Uncharacterized protein3.9e-0756.6Show/hide
Query:  FKGWKALCVSKFKGGLDLRYLELFNKVLLAKQDWQIMAKLNSLLALALKGKYF
        +K WK++C SKF GGL  R L  FN+ +LAKQ W I   LNSLL+L LK +YF
Subjt:  FKGWKALCVSKFKGGLDLRYLELFNKVLLAKQDWQIMAKLNSLLALALKGKYF
A0A803QGZ0 Uncharacterized protein2.3e-0756.6Show/hide
Query:  FKGWKALCVSKFKGGLDLRYLELFNKVLLAKQDWQIMAKLNSLLALALKGKYF
        +K WK+LC SKF+GGL  R L  FN+ +LAKQ W+I    NSLL+L LK +YF
Subjt:  FKGWKALCVSKFKGGLDLRYLELFNKVLLAKQDWQIMAKLNSLLALALKGKYF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein2.1e-0537.74Show/hide
Query:  FKGWKALCVSKFKGGLDLRYLELFNKVLLAKQDWQIMAKLNSLLALALKGKYF
        +K W  L   K +GG+  + +E FN  LL KQ W+++++  SL+A   K +YF
Subjt:  FKGWKALCVSKFKGGLDLRYLELFNKVLLAKQDWQIMAKLNSLLALALKGKYF
ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein2.3e-0445.1Show/hide
Query:  WKALCVSK-FKGGLDLRYLELFNKVLLAKQDWQIMAKLNSLLALALKGKYF
        W+ LC SK   GGL  R L  FN+ LLAKQ ++I+ + ++LL+  L+ +YF
Subjt:  WKALCVSK-FKGGLDLRYLELFNKVLLAKQDWQIMAKLNSLLALALKGKYF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTAAGGGGTGGAAGGCATTGTGTGTGTCTAAATTTAAGGGTGGCCTAGACCTTCGGTATCTCGAGCTTTTCAACAAAGTTCTTCTAGCAAAGCAAGACTGGCAGATTAT
GGCTAAGCTGAACTCTCTCCTAGCTTTGGCTCTAAAAGGAAAATATTTT
mRNA sequenceShow/hide mRNA sequence
TTTAAGGGGTGGAAGGCATTGTGTGTGTCTAAATTTAAGGGTGGCCTAGACCTTCGGTATCTCGAGCTTTTCAACAAAGTTCTTCTAGCAAAGCAAGACTGGCAGATTAT
GGCTAAGCTGAACTCTCTCCTAGCTTTGGCTCTAAAAGGAAAATATTTT
Protein sequenceShow/hide protein sequence
FKGWKALCVSKFKGGLDLRYLELFNKVLLAKQDWQIMAKLNSLLALALKGKYF