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MS021716 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS021716
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Genome locationscaffold566:242699..242998
RNA-Seq ExpressionMS021716
SyntenyMS021716
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_021838216.1 uncharacterized protein LOC110777953 [Spinacia oleracea]9.2e-0431.63Show/hide
Query:  AEIKGILEAMQLARSRNC-LCIVVESDSQKAIRFIQGDSQTLGDELIWISEMRSIALDFESISISHVSHMCNSCSHK--KWGISASTTCTWVSHYPSW
        AE    LEA+Q+AR+      IV E D+Q  +R ++G+ Q  GD  ++I ++ S+   F     +     CN  +H+  KW +++     WV   PSW
Subjt:  AEIKGILEAMQLARSRNC-LCIVVESDSQKAIRFIQGDSQTLGDELIWISEMRSIALDFESISISHVSHMCNSCSHK--KWGISASTTCTWVSHYPSW

XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]4.4e-0660.78Show/hide
Query:  LTPLLAEIKGILEAMQLARSRNCLCIVVESDSQKAIRFIQGDSQTLGDELI
        L PL AEI+GILEA++LA SR+   +VVESD Q+AIR +QGD  ++G+ELI
Subjt:  LTPLLAEIKGILEAMQLARSRNCLCIVVESDSQKAIRFIQGDSQTLGDELI

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]4.1e-1243.69Show/hide
Query:  LTPLLAEIKGILEAMQLARSRNCLCIVVESDSQKAIRFIQGDSQTLGDELIWISEMRSIALDFESISISHVSHMCNSCSH--KKWGI-SASTTCTWVSHY
        L+PLLAEI+ ILE ++ A + N   + VESDS  AI+ I+ +  T GDE  W+ E++++   F  IS SH S  CN  +H   KWGI S S T  W+ ++
Subjt:  LTPLLAEIKGILEAMQLARSRNCLCIVVESDSQKAIRFIQGDSQTLGDELIWISEMRSIALDFESISISHVSHMCNSCSH--KKWGI-SASTTCTWVSHY

Query:  PSW
        P+W
Subjt:  PSW

XP_022158489.1 uncharacterized protein LOC111024968 [Momordica charantia]4.1e-0432.67Show/hide
Query:  TPLLAEIKGILEAMQLARSRNCLCIVVESDSQKAIRFIQGDSQTLGDELIWISEMRSIALDFESISISHVSHMCNSCSHKKWGISASTTC--TWVSHYPS
        TPLLA+I  I E + LA       +VVE+DS +A+  I   S   G+ + W+ ++R+ A DF+ I   HV    N+ ++     + S  C   W   +P 
Subjt:  TPLLAEIKGILEAMQLARSRNCLCIVVESDSQKAIRFIQGDSQTLGDELIWISEMRSIALDFESISISHVSHMCNSCSHKKWGISASTTC--TWVSHYPS

Query:  W
        W
Subjt:  W

TrEMBL top hitse value%identityAlignment
A0A6J1BQ49 uncharacterized protein LOC1110047862.1e-0660.78Show/hide
Query:  LTPLLAEIKGILEAMQLARSRNCLCIVVESDSQKAIRFIQGDSQTLGDELI
        L PL AEI+GILEA++LA SR+   +VVESD Q+AIR +QGD  ++G+ELI
Subjt:  LTPLLAEIKGILEAMQLARSRNCLCIVVESDSQKAIRFIQGDSQTLGDELI

A0A6J1DX30 uncharacterized protein LOC1110248742.0e-1243.69Show/hide
Query:  LTPLLAEIKGILEAMQLARSRNCLCIVVESDSQKAIRFIQGDSQTLGDELIWISEMRSIALDFESISISHVSHMCNSCSH--KKWGI-SASTTCTWVSHY
        L+PLLAEI+ ILE ++ A + N   + VESDS  AI+ I+ +  T GDE  W+ E++++   F  IS SH S  CN  +H   KWGI S S T  W+ ++
Subjt:  LTPLLAEIKGILEAMQLARSRNCLCIVVESDSQKAIRFIQGDSQTLGDELIWISEMRSIALDFESISISHVSHMCNSCSH--KKWGI-SASTTCTWVSHY

Query:  PSW
        P+W
Subjt:  PSW

A0A6J1DZK3 uncharacterized protein LOC1110249682.0e-0432.67Show/hide
Query:  TPLLAEIKGILEAMQLARSRNCLCIVVESDSQKAIRFIQGDSQTLGDELIWISEMRSIALDFESISISHVSHMCNSCSHKKWGISASTTC--TWVSHYPS
        TPLLA+I  I E + LA       +VVE+DS +A+  I   S   G+ + W+ ++R+ A DF+ I   HV    N+ ++     + S  C   W   +P 
Subjt:  TPLLAEIKGILEAMQLARSRNCLCIVVESDSQKAIRFIQGDSQTLGDELIWISEMRSIALDFESISISHVSHMCNSCSHKKWGISASTTC--TWVSHYPS

Query:  W
        W
Subjt:  W

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTTACCCCTCTTCTGGCTGAAATTAAAGGTATTTTGGAGGCTATGCAGCTAGCTCGATCGAGAAATTGCCTTTGTATTGTTGTTGAATCAGATTCCCAAAAGGCTATTCG
CTTTATTCAGGGAGATTCTCAAACTCTAGGAGACGAATTGATCTGGATTTCGGAGATGAGAAGCATAGCTCTAGATTTTGAGTCCATTTCCATATCTCATGTCTCCCATA
TGTGCAACTCGTGTTCTCACAAAAAATGGGGAATCTCAGCTTCAACCACGTGTACGTGGGTCTCCCATTATCCTTCATGG
mRNA sequenceShow/hide mRNA sequence
CTTACCCCTCTTCTGGCTGAAATTAAAGGTATTTTGGAGGCTATGCAGCTAGCTCGATCGAGAAATTGCCTTTGTATTGTTGTTGAATCAGATTCCCAAAAGGCTATTCG
CTTTATTCAGGGAGATTCTCAAACTCTAGGAGACGAATTGATCTGGATTTCGGAGATGAGAAGCATAGCTCTAGATTTTGAGTCCATTTCCATATCTCATGTCTCCCATA
TGTGCAACTCGTGTTCTCACAAAAAATGGGGAATCTCAGCTTCAACCACGTGTACGTGGGTCTCCCATTATCCTTCATGG
Protein sequenceShow/hide protein sequence
LTPLLAEIKGILEAMQLARSRNCLCIVVESDSQKAIRFIQGDSQTLGDELIWISEMRSIALDFESISISHVSHMCNSCSHKKWGISASTTCTWVSHYPSW