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MS021737 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS021737
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUPF0047 protein like
Genome locationscaffold1:91213..93338
RNA-Seq ExpressionMS021737
SyntenyMS021737
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR001602 - Uncharacterised protein family UPF0047
IPR035917 - YjbQ-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008453044.1 PREDICTED: UPF0047 protein YjbQ [Cucumis melo]6.8e-6786.84Show/hide
Query:  MQGAVLLAAQAQPVRVKLARSINCNTSSGHPSASAGSGTPSQMAAAGPKWAQKTVTLPPHRRGCHLITPKIMKEIGQDLAEFKCGLAHIFLQHTSASLTI
        MQGA++LA  AQP+RVKL RS   N+S+G+PSA+AGS  PS MAAAGPKWAQKTVTL PHRRGCHLITPKIMKEIGQDL+EFKCGLAHIFLQHTSASLTI
Subjt:  MQGAVLLAAQAQPVRVKLARSINCNTSSGHPSASAGSGTPSQMAAAGPKWAQKTVTLPPHRRGCHLITPKIMKEIGQDLAEFKCGLAHIFLQHTSASLTI

Query:  NENYDSDVQSDTETFLNRIVPEGTSAPWKHTLEGPDDMPAHIKSSMFGCALT
        NENYDSDVQSDTETFLN+IVPEGTSAPWKHTLEGPDDMPAHIKSS+FGCALT
Subjt:  NENYDSDVQSDTETFLNRIVPEGTSAPWKHTLEGPDDMPAHIKSSMFGCALT

XP_022151749.1 uncharacterized protein LOC111019630 isoform X1 [Momordica charantia]7.0e-8098.68Show/hide
Query:  MQGAVLLAAQAQPVRVKLARSINCNTSSGHPSASAGSGTPSQMAAAGPKWAQKTVTLPPHRRGCHLITPKIMKEIGQDLAEFKCGLAHIFLQHTSASLTI
        MQGAVLLA QAQPVRVKLARSINCNTSSGHPSASAGSGTPSQMAAAGPKWAQKTVTLPPHRRGCHLITPKIMKEIGQDLAEFKCGLAHIFLQHTSASLTI
Subjt:  MQGAVLLAAQAQPVRVKLARSINCNTSSGHPSASAGSGTPSQMAAAGPKWAQKTVTLPPHRRGCHLITPKIMKEIGQDLAEFKCGLAHIFLQHTSASLTI

Query:  NENYDSDVQSDTETFLNRIVPEGTSAPWKHTLEGPDDMPAHIKSSMFGCALT
        NENYDSDV+SDTETFLNRIVPEGTSAPWKHTLEGPDDMPAHIKSSMFGCALT
Subjt:  NENYDSDVQSDTETFLNRIVPEGTSAPWKHTLEGPDDMPAHIKSSMFGCALT

XP_022151829.1 uncharacterized protein LOC111019630 isoform X2 [Momordica charantia]7.0e-8098.68Show/hide
Query:  MQGAVLLAAQAQPVRVKLARSINCNTSSGHPSASAGSGTPSQMAAAGPKWAQKTVTLPPHRRGCHLITPKIMKEIGQDLAEFKCGLAHIFLQHTSASLTI
        MQGAVLLA QAQPVRVKLARSINCNTSSGHPSASAGSGTPSQMAAAGPKWAQKTVTLPPHRRGCHLITPKIMKEIGQDLAEFKCGLAHIFLQHTSASLTI
Subjt:  MQGAVLLAAQAQPVRVKLARSINCNTSSGHPSASAGSGTPSQMAAAGPKWAQKTVTLPPHRRGCHLITPKIMKEIGQDLAEFKCGLAHIFLQHTSASLTI

Query:  NENYDSDVQSDTETFLNRIVPEGTSAPWKHTLEGPDDMPAHIKSSMFGCALT
        NENYDSDV+SDTETFLNRIVPEGTSAPWKHTLEGPDDMPAHIKSSMFGCALT
Subjt:  NENYDSDVQSDTETFLNRIVPEGTSAPWKHTLEGPDDMPAHIKSSMFGCALT

XP_022936473.1 uncharacterized protein LOC111443082 [Cucurbita moschata]8.9e-6787.5Show/hide
Query:  MQGAVLLAAQAQPVRVKLARSINCNTSSGHPSASAGSGTPSQMAAAGPKWAQKTVTLPPHRRGCHLITPKIMKEIGQDLAEFKCGLAHIFLQHTSASLTI
        MQGAVLLA  AQP+RVKL  S   N+S+G+PSA+AG+G PS MAAAGPKWAQKTVTLPPHRRGCHLITPKIMKEIG+DL+EFKCGLAHIFLQHTSASLTI
Subjt:  MQGAVLLAAQAQPVRVKLARSINCNTSSGHPSASAGSGTPSQMAAAGPKWAQKTVTLPPHRRGCHLITPKIMKEIGQDLAEFKCGLAHIFLQHTSASLTI

Query:  NENYDSDVQSDTETFLNRIVPEGTSAPWKHTLEGPDDMPAHIKSSMFGCALT
        NENYDSDV+SDTETFLN IVPEGTSAPWKHTLEGPDDMPAHIKSSMFGCALT
Subjt:  NENYDSDVQSDTETFLNRIVPEGTSAPWKHTLEGPDDMPAHIKSSMFGCALT

XP_022976235.1 uncharacterized protein LOC111476694 [Cucurbita maxima]8.9e-6787.5Show/hide
Query:  MQGAVLLAAQAQPVRVKLARSINCNTSSGHPSASAGSGTPSQMAAAGPKWAQKTVTLPPHRRGCHLITPKIMKEIGQDLAEFKCGLAHIFLQHTSASLTI
        MQGAVLLA  AQP+RVKL  S   N+S+G+PSA+AG+G PS MAAAGPKWAQKTVTLPPHRRGCHLITPKIMKEIG DL+EFKCGLAHIFLQHTSASLTI
Subjt:  MQGAVLLAAQAQPVRVKLARSINCNTSSGHPSASAGSGTPSQMAAAGPKWAQKTVTLPPHRRGCHLITPKIMKEIGQDLAEFKCGLAHIFLQHTSASLTI

Query:  NENYDSDVQSDTETFLNRIVPEGTSAPWKHTLEGPDDMPAHIKSSMFGCALT
        NENYDSDV+SDTETFLN IVPEGTSAPWKHTLEGPDDMPAHIKSSMFGCALT
Subjt:  NENYDSDVQSDTETFLNRIVPEGTSAPWKHTLEGPDDMPAHIKSSMFGCALT

TrEMBL top hitse value%identityAlignment
A0A1S3BUP9 UPF0047 protein YjbQ3.3e-6786.84Show/hide
Query:  MQGAVLLAAQAQPVRVKLARSINCNTSSGHPSASAGSGTPSQMAAAGPKWAQKTVTLPPHRRGCHLITPKIMKEIGQDLAEFKCGLAHIFLQHTSASLTI
        MQGA++LA  AQP+RVKL RS   N+S+G+PSA+AGS  PS MAAAGPKWAQKTVTL PHRRGCHLITPKIMKEIGQDL+EFKCGLAHIFLQHTSASLTI
Subjt:  MQGAVLLAAQAQPVRVKLARSINCNTSSGHPSASAGSGTPSQMAAAGPKWAQKTVTLPPHRRGCHLITPKIMKEIGQDLAEFKCGLAHIFLQHTSASLTI

Query:  NENYDSDVQSDTETFLNRIVPEGTSAPWKHTLEGPDDMPAHIKSSMFGCALT
        NENYDSDVQSDTETFLN+IVPEGTSAPWKHTLEGPDDMPAHIKSS+FGCALT
Subjt:  NENYDSDVQSDTETFLNRIVPEGTSAPWKHTLEGPDDMPAHIKSSMFGCALT

A0A6J1DDZ9 uncharacterized protein LOC111019630 isoform X13.4e-8098.68Show/hide
Query:  MQGAVLLAAQAQPVRVKLARSINCNTSSGHPSASAGSGTPSQMAAAGPKWAQKTVTLPPHRRGCHLITPKIMKEIGQDLAEFKCGLAHIFLQHTSASLTI
        MQGAVLLA QAQPVRVKLARSINCNTSSGHPSASAGSGTPSQMAAAGPKWAQKTVTLPPHRRGCHLITPKIMKEIGQDLAEFKCGLAHIFLQHTSASLTI
Subjt:  MQGAVLLAAQAQPVRVKLARSINCNTSSGHPSASAGSGTPSQMAAAGPKWAQKTVTLPPHRRGCHLITPKIMKEIGQDLAEFKCGLAHIFLQHTSASLTI

Query:  NENYDSDVQSDTETFLNRIVPEGTSAPWKHTLEGPDDMPAHIKSSMFGCALT
        NENYDSDV+SDTETFLNRIVPEGTSAPWKHTLEGPDDMPAHIKSSMFGCALT
Subjt:  NENYDSDVQSDTETFLNRIVPEGTSAPWKHTLEGPDDMPAHIKSSMFGCALT

A0A6J1DE78 uncharacterized protein LOC111019630 isoform X23.4e-8098.68Show/hide
Query:  MQGAVLLAAQAQPVRVKLARSINCNTSSGHPSASAGSGTPSQMAAAGPKWAQKTVTLPPHRRGCHLITPKIMKEIGQDLAEFKCGLAHIFLQHTSASLTI
        MQGAVLLA QAQPVRVKLARSINCNTSSGHPSASAGSGTPSQMAAAGPKWAQKTVTLPPHRRGCHLITPKIMKEIGQDLAEFKCGLAHIFLQHTSASLTI
Subjt:  MQGAVLLAAQAQPVRVKLARSINCNTSSGHPSASAGSGTPSQMAAAGPKWAQKTVTLPPHRRGCHLITPKIMKEIGQDLAEFKCGLAHIFLQHTSASLTI

Query:  NENYDSDVQSDTETFLNRIVPEGTSAPWKHTLEGPDDMPAHIKSSMFGCALT
        NENYDSDV+SDTETFLNRIVPEGTSAPWKHTLEGPDDMPAHIKSSMFGCALT
Subjt:  NENYDSDVQSDTETFLNRIVPEGTSAPWKHTLEGPDDMPAHIKSSMFGCALT

A0A6J1FDC5 uncharacterized protein LOC1114430824.3e-6787.5Show/hide
Query:  MQGAVLLAAQAQPVRVKLARSINCNTSSGHPSASAGSGTPSQMAAAGPKWAQKTVTLPPHRRGCHLITPKIMKEIGQDLAEFKCGLAHIFLQHTSASLTI
        MQGAVLLA  AQP+RVKL  S   N+S+G+PSA+AG+G PS MAAAGPKWAQKTVTLPPHRRGCHLITPKIMKEIG+DL+EFKCGLAHIFLQHTSASLTI
Subjt:  MQGAVLLAAQAQPVRVKLARSINCNTSSGHPSASAGSGTPSQMAAAGPKWAQKTVTLPPHRRGCHLITPKIMKEIGQDLAEFKCGLAHIFLQHTSASLTI

Query:  NENYDSDVQSDTETFLNRIVPEGTSAPWKHTLEGPDDMPAHIKSSMFGCALT
        NENYDSDV+SDTETFLN IVPEGTSAPWKHTLEGPDDMPAHIKSSMFGCALT
Subjt:  NENYDSDVQSDTETFLNRIVPEGTSAPWKHTLEGPDDMPAHIKSSMFGCALT

A0A6J1IIX0 uncharacterized protein LOC1114766944.3e-6787.5Show/hide
Query:  MQGAVLLAAQAQPVRVKLARSINCNTSSGHPSASAGSGTPSQMAAAGPKWAQKTVTLPPHRRGCHLITPKIMKEIGQDLAEFKCGLAHIFLQHTSASLTI
        MQGAVLLA  AQP+RVKL  S   N+S+G+PSA+AG+G PS MAAAGPKWAQKTVTLPPHRRGCHLITPKIMKEIG DL+EFKCGLAHIFLQHTSASLTI
Subjt:  MQGAVLLAAQAQPVRVKLARSINCNTSSGHPSASAGSGTPSQMAAAGPKWAQKTVTLPPHRRGCHLITPKIMKEIGQDLAEFKCGLAHIFLQHTSASLTI

Query:  NENYDSDVQSDTETFLNRIVPEGTSAPWKHTLEGPDDMPAHIKSSMFGCALT
        NENYDSDV+SDTETFLN IVPEGTSAPWKHTLEGPDDMPAHIKSSMFGCALT
Subjt:  NENYDSDVQSDTETFLNRIVPEGTSAPWKHTLEGPDDMPAHIKSSMFGCALT

SwissProt top hitse value%identityAlignment
O14155 UPF0047 protein C4A8.02c2.9e-2047.52Show/hide
Query:  QKTVTLPPHRRGCHLITPKIMKEIGQDLAEFKCGLAHIFLQHTSASLTINENYDSDVQSDTETFLNRIVPEGTSAPWKHTLEGPDDMPAHIKSSMFGCAL
        Q+ +TL    +G ++IT  ++K++  +L  F  G  + F+QHTSA+LTINEN+D+D ++D    L++IVPE  SA ++HT EG DDMPAH+KSS+ G +L
Subjt:  QKTVTLPPHRRGCHLITPKIMKEIGQDLAEFKCGLAHIFLQHTSASLTINENYDSDVQSDTETFLNRIVPEGTSAPWKHTLEGPDDMPAHIKSSMFGCAL

Query:  T
        T
Subjt:  T

P0A2L1 UPF0047 protein YjbQ4.6e-1847.06Show/hide
Query:  WAQKTVTLPPHRRGCHLITPKIMKEIGQDLAEFKCGLAHIFLQHTSASLTINENYDSDVQSDTETFLNRIVPEGTSAPWKHTLEGPDDMPAHIKSSMFGC
        W Q+T+TL    RG HLIT +I  ++   L   + GL H+ L HTSASLT+NEN D  V++D E    + VP+  +A ++H  EG DDMP+HIKSS+ G 
Subjt:  WAQKTVTLPPHRRGCHLITPKIMKEIGQDLAEFKCGLAHIFLQHTSASLTINENYDSDVQSDTETFLNRIVPEGTSAPWKHTLEGPDDMPAHIKSSMFGC

Query:  AL
        +L
Subjt:  AL

P0A2L2 UPF0047 protein YjbQ4.6e-1847.06Show/hide
Query:  WAQKTVTLPPHRRGCHLITPKIMKEIGQDLAEFKCGLAHIFLQHTSASLTINENYDSDVQSDTETFLNRIVPEGTSAPWKHTLEGPDDMPAHIKSSMFGC
        W Q+T+TL    RG HLIT +I  ++   L   + GL H+ L HTSASLT+NEN D  V++D E    + VP+  +A ++H  EG DDMP+HIKSS+ G 
Subjt:  WAQKTVTLPPHRRGCHLITPKIMKEIGQDLAEFKCGLAHIFLQHTSASLTINENYDSDVQSDTETFLNRIVPEGTSAPWKHTLEGPDDMPAHIKSSMFGC

Query:  AL
        +L
Subjt:  AL

P0AF48 UPF0047 protein YjbQ5.8e-2150Show/hide
Query:  WAQKTVTLPPHRRGCHLITPKIMKEIGQDLAEFKCGLAHIFLQHTSASLTINENYDSDVQSDTETFLNRIVPEGTSAPWKHTLEGPDDMPAHIKSSMFGC
        W QKT+TL    RG HL+T +I+ ++  D+     GL H+ LQHTSASLT+NEN D  V+ D E F  R VP+  +  ++H  EG DDMP+HIKSSM G 
Subjt:  WAQKTVTLPPHRRGCHLITPKIMKEIGQDLAEFKCGLAHIFLQHTSASLTINENYDSDVQSDTETFLNRIVPEGTSAPWKHTLEGPDDMPAHIKSSMFGC

Query:  AL
        +L
Subjt:  AL

P0AF49 UPF0047 protein YjbQ5.8e-2150Show/hide
Query:  WAQKTVTLPPHRRGCHLITPKIMKEIGQDLAEFKCGLAHIFLQHTSASLTINENYDSDVQSDTETFLNRIVPEGTSAPWKHTLEGPDDMPAHIKSSMFGC
        W QKT+TL    RG HL+T +I+ ++  D+     GL H+ LQHTSASLT+NEN D  V+ D E F  R VP+  +  ++H  EG DDMP+HIKSSM G 
Subjt:  WAQKTVTLPPHRRGCHLITPKIMKEIGQDLAEFKCGLAHIFLQHTSASLTINENYDSDVQSDTETFLNRIVPEGTSAPWKHTLEGPDDMPAHIKSSMFGC

Query:  AL
        +L
Subjt:  AL

Arabidopsis top hitse value%identityAlignment
AT1G21065.1 unknown protein1.7e-5276.67Show/hide
Query:  ASAGSGTPSQMAAAGPKWAQKTVTLPPHRRGCHLITPKIMKEIGQDLAEFKCGLAHIFLQHTSASLTINENYDSDVQSDTETFLNRIVPEGTSAPWKHTL
        A+  +   S  +++G KWAQKT+TLPP RRGCHLITPKI+KEI +DL++F CGLAH+FLQHTSASLTINENYD DVQ+DTETFLNRIVPEG SAPW+HT+
Subjt:  ASAGSGTPSQMAAAGPKWAQKTVTLPPHRRGCHLITPKIMKEIGQDLAEFKCGLAHIFLQHTSASLTINENYDSDVQSDTETFLNRIVPEGTSAPWKHTL

Query:  EGPDDMPAHIKSSMFGCALT
        EGPDDMPAHIKSSMFGC LT
Subjt:  EGPDDMPAHIKSSMFGCALT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGGCGCTGTTCTCTTGGCTGCACAAGCACAACCAGTCCGAGTAAAGTTGGCGAGGAGCATCAATTGCAATACCAGTAGTGGTCATCCGTCCGCCTCCGCAGGCTC
AGGCACTCCAAGCCAGATGGCGGCCGCTGGTCCGAAGTGGGCTCAGAAGACTGTTACGCTGCCTCCTCATAGGCGGGGCTGTCATCTCATCACCCCGAAGATAATGAAGG
AAATTGGACAAGACTTGGCAGAGTTCAAATGTGGCCTTGCTCATATCTTCTTGCAGCATACAAGTGCCTCTCTTACCATCAATGAAAACTATGATTCGGATGTTCAGAGC
GATACTGAAACCTTCCTCAATAGGATAGTGCCTGAAGGGACATCTGCTCCTTGGAAGCATACACTTGAAGGTCCGGATGACATGCCAGCACATATTAAATCATCAATGTT
TGGCTGTGCTCTCACG
mRNA sequenceShow/hide mRNA sequence
ATGCAAGGCGCTGTTCTCTTGGCTGCACAAGCACAACCAGTCCGAGTAAAGTTGGCGAGGAGCATCAATTGCAATACCAGTAGTGGTCATCCGTCCGCCTCCGCAGGCTC
AGGCACTCCAAGCCAGATGGCGGCCGCTGGTCCGAAGTGGGCTCAGAAGACTGTTACGCTGCCTCCTCATAGGCGGGGCTGTCATCTCATCACCCCGAAGATAATGAAGG
AAATTGGACAAGACTTGGCAGAGTTCAAATGTGGCCTTGCTCATATCTTCTTGCAGCATACAAGTGCCTCTCTTACCATCAATGAAAACTATGATTCGGATGTTCAGAGC
GATACTGAAACCTTCCTCAATAGGATAGTGCCTGAAGGGACATCTGCTCCTTGGAAGCATACACTTGAAGGTCCGGATGACATGCCAGCACATATTAAATCATCAATGTT
TGGCTGTGCTCTCACG
Protein sequenceShow/hide protein sequence
MQGAVLLAAQAQPVRVKLARSINCNTSSGHPSASAGSGTPSQMAAAGPKWAQKTVTLPPHRRGCHLITPKIMKEIGQDLAEFKCGLAHIFLQHTSASLTINENYDSDVQS
DTETFLNRIVPEGTSAPWKHTLEGPDDMPAHIKSSMFGCALT