; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS021747 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS021747
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionChlorophyll a-b binding protein, chloroplastic
Genome locationscaffold1:152918..156793
RNA-Seq ExpressionMS021747
SyntenyMS021747
Gene Ontology termsGO:0009416 - response to light stimulus (biological process)
GO:0009768 - photosynthesis, light harvesting in photosystem I (biological process)
GO:0018298 - protein-chromophore linkage (biological process)
GO:0009522 - photosystem I (cellular component)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016168 - chlorophyll binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001344 - Chlorophyll A-B binding protein, plant and chromista
IPR022796 - Chlorophyll A-B binding protein
IPR023329 - Chlorophyll a/b binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008453032.2 PREDICTED: chlorophyll a-b binding protein of LHCII type 1 isoform X1 [Cucumis melo]4.9e-17188.92Show/hide
Query:  MAILQPHTSPSAIPSSSASFYGSSLQQPR----LSNLRNSRSVPYRSTCKASWQELAGVLIFSAIPFTAVKAIANSPLGESLQRQMEKKKEAAIANSSKF
        MA++QPHT  S+I SSSASFYG+ LQQ R      NLR++ S+ +RSTC+ASWQELAGVLIFSA+PFTAVKAIANSPLGESLQRQ+EKKK++A+ANSSKF
Subjt:  MAILQPHTSPSAIPSSSASFYGSSLQQPR----LSNLRNSRSVPYRSTCKASWQELAGVLIFSAIPFTAVKAIANSPLGESLQRQMEKKKEAAIANSSKF

Query:  KALAREARKDSSWYGEERPRWLGPIPYEYPKYLTGDLPGDYGFDIAGLSKDPVAFQKYFNFEILHARWAMLASLGALIPEILDISGAFHFSEPIWWRVGY
        KALA EARKDSSWYGEERPRWLGP+PY+YPKYLTG+LPGDYGFDIAGLS+DPVAFQKYFNFEILHARWAMLASLGAL+PEILDI GAFHF+EPIWWRVGY
Subjt:  KALAREARKDSSWYGEERPRWLGPIPYEYPKYLTGDLPGDYGFDIAGLSKDPVAFQKYFNFEILHARWAMLASLGALIPEILDISGAFHFSEPIWWRVGY

Query:  SKLKGDTLDYLGIPGLHLAGSQGVIVIAICQVILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLG
        SKLKGDTLDYLGIPGLHLAGSQGVIVIAICQ ILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLG
Subjt:  SKLKGDTLDYLGIPGLHLAGSQGVIVIAICQVILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLG

Query:  FYSQAALTGKGPVQNLLEHISDPFHNNFLSLLNS
        FYSQAALTGKGPVQNLL+HISDPFHNNFLSLLNS
Subjt:  FYSQAALTGKGPVQNLLEHISDPFHNNFLSLLNS

XP_022141964.1 chlorophyll a-b binding protein 7, chloroplastic [Momordica charantia]1.1e-189100Show/hide
Query:  MAILQPHTSPSAIPSSSASFYGSSLQQPRLSNLRNSRSVPYRSTCKASWQELAGVLIFSAIPFTAVKAIANSPLGESLQRQMEKKKEAAIANSSKFKALA
        MAILQPHTSPSAIPSSSASFYGSSLQQPRLSNLRNSRSVPYRSTCKASWQELAGVLIFSAIPFTAVKAIANSPLGESLQRQMEKKKEAAIANSSKFKALA
Subjt:  MAILQPHTSPSAIPSSSASFYGSSLQQPRLSNLRNSRSVPYRSTCKASWQELAGVLIFSAIPFTAVKAIANSPLGESLQRQMEKKKEAAIANSSKFKALA

Query:  REARKDSSWYGEERPRWLGPIPYEYPKYLTGDLPGDYGFDIAGLSKDPVAFQKYFNFEILHARWAMLASLGALIPEILDISGAFHFSEPIWWRVGYSKLK
        REARKDSSWYGEERPRWLGPIPYEYPKYLTGDLPGDYGFDIAGLSKDPVAFQKYFNFEILHARWAMLASLGALIPEILDISGAFHFSEPIWWRVGYSKLK
Subjt:  REARKDSSWYGEERPRWLGPIPYEYPKYLTGDLPGDYGFDIAGLSKDPVAFQKYFNFEILHARWAMLASLGALIPEILDISGAFHFSEPIWWRVGYSKLK

Query:  GDTLDYLGIPGLHLAGSQGVIVIAICQVILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQ
        GDTLDYLGIPGLHLAGSQGVIVIAICQVILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQ
Subjt:  GDTLDYLGIPGLHLAGSQGVIVIAICQVILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQ

Query:  AALTGKGPVQNLLEHISDPFHNNFLSLLNSW
        AALTGKGPVQNLLEHISDPFHNNFLSLLNSW
Subjt:  AALTGKGPVQNLLEHISDPFHNNFLSLLNSW

XP_022936160.1 chlorophyll a-b binding protein 7, chloroplastic [Cucurbita moschata]4.5e-17289.82Show/hide
Query:  MAILQPHTSPSAIPSSSASFYGSSLQQPR----LSNLRNSRSVPYRSTCKASWQELAGVLIFSAIPFTAVKAIANSPLGESLQRQMEKKKEAAIANSSKF
        MA+ QPHTSPSAI SSSASFYGSSLQQ R      NLRNS S+P+R TC ASWQELAGVLIFSAIPFTAVKAIANSP GESLQRQ+EKKK AA+A SSKF
Subjt:  MAILQPHTSPSAIPSSSASFYGSSLQQPR----LSNLRNSRSVPYRSTCKASWQELAGVLIFSAIPFTAVKAIANSPLGESLQRQMEKKKEAAIANSSKF

Query:  KALAREARKDSSWYGEERPRWLGPIPYEYPKYLTGDLPGDYGFDIAGLSKDPVAFQKYFNFEILHARWAMLASLGALIPEILDISGAFHFSEPIWWRVGY
        KALA +ARKDSSWYGE+RPRWLGP+PY YPKYLTG+LPGDYGFDIAGLS+DPVAF+KYFNFEILHARWAMLASLGAL+PEILDI GAFHF+EPIWWRVGY
Subjt:  KALAREARKDSSWYGEERPRWLGPIPYEYPKYLTGDLPGDYGFDIAGLSKDPVAFQKYFNFEILHARWAMLASLGALIPEILDISGAFHFSEPIWWRVGY

Query:  SKLKGDTLDYLGIPGLHLAGSQGVIVIAICQVILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLG
        SKLKGDTLDYLGIPGLHLAGSQGVIVIAICQ ILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLG
Subjt:  SKLKGDTLDYLGIPGLHLAGSQGVIVIAICQVILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLG

Query:  FYSQAALTGKGPVQNLLEHISDPFHNNFLSLLNS
        FYSQAALTGKGP+QNLLEH+SDPFHNNFLSLLNS
Subjt:  FYSQAALTGKGPVQNLLEHISDPFHNNFLSLLNS

XP_023521109.1 chlorophyll a-b binding protein 7, chloroplastic [Cucurbita pepo subsp. pepo]2.0e-17290.12Show/hide
Query:  MAILQPHTSPSAIPSSSASFYGSSLQQPR----LSNLRNSRSVPYRSTCKASWQELAGVLIFSAIPFTAVKAIANSPLGESLQRQMEKKKEAAIANSSKF
        MA+ QPHTSPSAI SSSASFYGSSLQQ R      NLRNS S+P+R TC ASWQELAGVLIFSAIPFTAVKAIANSP GESLQRQ+EKKK AA+A SSKF
Subjt:  MAILQPHTSPSAIPSSSASFYGSSLQQPR----LSNLRNSRSVPYRSTCKASWQELAGVLIFSAIPFTAVKAIANSPLGESLQRQMEKKKEAAIANSSKF

Query:  KALAREARKDSSWYGEERPRWLGPIPYEYPKYLTGDLPGDYGFDIAGLSKDPVAFQKYFNFEILHARWAMLASLGALIPEILDISGAFHFSEPIWWRVGY
        KALA EARKDSSWYGE+RPRWLGP+PY YPKYLTG+LPGDYGFDIAGLS+DPVAF+KYFNFEILHARWAMLASLGAL+PEILDI GAFHF+EPIWWRVGY
Subjt:  KALAREARKDSSWYGEERPRWLGPIPYEYPKYLTGDLPGDYGFDIAGLSKDPVAFQKYFNFEILHARWAMLASLGALIPEILDISGAFHFSEPIWWRVGY

Query:  SKLKGDTLDYLGIPGLHLAGSQGVIVIAICQVILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLG
        SKLKGDTLDYLGIPGLHLAGSQGVIVIAICQ ILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLG
Subjt:  SKLKGDTLDYLGIPGLHLAGSQGVIVIAICQVILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLG

Query:  FYSQAALTGKGPVQNLLEHISDPFHNNFLSLLNS
        FYSQAALTGKGP+QNLLEH+SDPFHNNFLSLLNS
Subjt:  FYSQAALTGKGPVQNLLEHISDPFHNNFLSLLNS

XP_038898449.1 chlorophyll a-b binding protein 7, chloroplastic isoform X1 [Benincasa hispida]4.9e-17189.82Show/hide
Query:  MAILQPHTSPSAIPSSSASFYGSSLQQPR----LSNLRNSRSVPYRSTCKASWQELAGVLIFSAIPFTAVKAIANSPLGESLQRQMEKKKEAAIANSSKF
        MA++QPHT   AI SSSASFYGSSLQ+ R      NLRN  S+P+RSTC+ASWQELAGVLIFSAIPFTAVKAIANSPLGESLQRQ+EKKK++AIANSSKF
Subjt:  MAILQPHTSPSAIPSSSASFYGSSLQQPR----LSNLRNSRSVPYRSTCKASWQELAGVLIFSAIPFTAVKAIANSPLGESLQRQMEKKKEAAIANSSKF

Query:  KALAREARKDSSWYGEERPRWLGPIPYEYPKYLTGDLPGDYGFDIAGLSKDPVAFQKYFNFEILHARWAMLASLGALIPEILDISGAFHFSEPIWWRVGY
        K LA EARKDSSWYGEERPRWLGP+PY+YPKYLTG+LPGDYGFDIAGLS+DPVAFQKYFNFEILHARWAMLASLGAL+PEILDI GAFHF+EPIWWRVGY
Subjt:  KALAREARKDSSWYGEERPRWLGPIPYEYPKYLTGDLPGDYGFDIAGLSKDPVAFQKYFNFEILHARWAMLASLGALIPEILDISGAFHFSEPIWWRVGY

Query:  SKLKGDTLDYLGIPGLHLAGSQGVIVIAICQVILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLG
        SKLKGDTLDYLGIPGLHLAGSQGV+VIAICQ ILMVGPEYARYCGIEALEPLGI+LPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLG
Subjt:  SKLKGDTLDYLGIPGLHLAGSQGVIVIAICQVILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLG

Query:  FYSQAALTGKGPVQNLLEHISDPFHNNFLSLLNS
        FYSQAALTGKGPVQNLLEHISDPFHNNFLSLLNS
Subjt:  FYSQAALTGKGPVQNLLEHISDPFHNNFLSLLNS

TrEMBL top hitse value%identityAlignment
A0A1S3BWE1 Chlorophyll a-b binding protein, chloroplastic2.4e-17188.92Show/hide
Query:  MAILQPHTSPSAIPSSSASFYGSSLQQPR----LSNLRNSRSVPYRSTCKASWQELAGVLIFSAIPFTAVKAIANSPLGESLQRQMEKKKEAAIANSSKF
        MA++QPHT  S+I SSSASFYG+ LQQ R      NLR++ S+ +RSTC+ASWQELAGVLIFSA+PFTAVKAIANSPLGESLQRQ+EKKK++A+ANSSKF
Subjt:  MAILQPHTSPSAIPSSSASFYGSSLQQPR----LSNLRNSRSVPYRSTCKASWQELAGVLIFSAIPFTAVKAIANSPLGESLQRQMEKKKEAAIANSSKF

Query:  KALAREARKDSSWYGEERPRWLGPIPYEYPKYLTGDLPGDYGFDIAGLSKDPVAFQKYFNFEILHARWAMLASLGALIPEILDISGAFHFSEPIWWRVGY
        KALA EARKDSSWYGEERPRWLGP+PY+YPKYLTG+LPGDYGFDIAGLS+DPVAFQKYFNFEILHARWAMLASLGAL+PEILDI GAFHF+EPIWWRVGY
Subjt:  KALAREARKDSSWYGEERPRWLGPIPYEYPKYLTGDLPGDYGFDIAGLSKDPVAFQKYFNFEILHARWAMLASLGALIPEILDISGAFHFSEPIWWRVGY

Query:  SKLKGDTLDYLGIPGLHLAGSQGVIVIAICQVILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLG
        SKLKGDTLDYLGIPGLHLAGSQGVIVIAICQ ILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLG
Subjt:  SKLKGDTLDYLGIPGLHLAGSQGVIVIAICQVILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLG

Query:  FYSQAALTGKGPVQNLLEHISDPFHNNFLSLLNS
        FYSQAALTGKGPVQNLL+HISDPFHNNFLSLLNS
Subjt:  FYSQAALTGKGPVQNLLEHISDPFHNNFLSLLNS

A0A5A7VCG1 Chlorophyll a-b binding protein, chloroplastic2.9e-16988.32Show/hide
Query:  MAILQPHTSPSAIPSSSASFYGSSLQQPR----LSNLRNSRSVPYRSTCKASWQELAGVLIFSAIPFTAVKAIANSPLGESLQRQMEKKKEAAIANSSKF
        MA++QPHT  S+I SSSASFYG+ LQQ R      NLR++ S+ +RSTC+ASWQELAGVLIFSA+PFTAVKAIANSPLGESLQRQ+EKKK++A+ANSSKF
Subjt:  MAILQPHTSPSAIPSSSASFYGSSLQQPR----LSNLRNSRSVPYRSTCKASWQELAGVLIFSAIPFTAVKAIANSPLGESLQRQMEKKKEAAIANSSKF

Query:  KALAREARKDSSWYGEERPRWLGPIPYEYPKYLTGDLPGDYGFDIAGLSKDPVAFQKYFNFEILHARWAMLASLGALIPEILDISGAFHFSEPIWWRVGY
        KALA EARKDSSWYGEERPRWLGP+PY+YPKYLTG+LPGDYGFDIAGLS+DPVAFQKYFNFEILHARWAMLASLGAL+PEILDI GAFHF+EPIWWRVGY
Subjt:  KALAREARKDSSWYGEERPRWLGPIPYEYPKYLTGDLPGDYGFDIAGLSKDPVAFQKYFNFEILHARWAMLASLGALIPEILDISGAFHFSEPIWWRVGY

Query:  SKLKGDTLDYLGIPGLHLAGSQGVIVIAICQVILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLG
        SKLK  TLDYLGIPGLHLAGSQGVIVIAICQ ILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLG
Subjt:  SKLKGDTLDYLGIPGLHLAGSQGVIVIAICQVILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLG

Query:  FYSQAALTGKGPVQNLLEHISDPFHNNFLSLLNS
        FYSQAALTGKGPVQNLL+HISDPFHNNFLSLLNS
Subjt:  FYSQAALTGKGPVQNLLEHISDPFHNNFLSLLNS

A0A6J1CK83 Chlorophyll a-b binding protein, chloroplastic5.1e-190100Show/hide
Query:  MAILQPHTSPSAIPSSSASFYGSSLQQPRLSNLRNSRSVPYRSTCKASWQELAGVLIFSAIPFTAVKAIANSPLGESLQRQMEKKKEAAIANSSKFKALA
        MAILQPHTSPSAIPSSSASFYGSSLQQPRLSNLRNSRSVPYRSTCKASWQELAGVLIFSAIPFTAVKAIANSPLGESLQRQMEKKKEAAIANSSKFKALA
Subjt:  MAILQPHTSPSAIPSSSASFYGSSLQQPRLSNLRNSRSVPYRSTCKASWQELAGVLIFSAIPFTAVKAIANSPLGESLQRQMEKKKEAAIANSSKFKALA

Query:  REARKDSSWYGEERPRWLGPIPYEYPKYLTGDLPGDYGFDIAGLSKDPVAFQKYFNFEILHARWAMLASLGALIPEILDISGAFHFSEPIWWRVGYSKLK
        REARKDSSWYGEERPRWLGPIPYEYPKYLTGDLPGDYGFDIAGLSKDPVAFQKYFNFEILHARWAMLASLGALIPEILDISGAFHFSEPIWWRVGYSKLK
Subjt:  REARKDSSWYGEERPRWLGPIPYEYPKYLTGDLPGDYGFDIAGLSKDPVAFQKYFNFEILHARWAMLASLGALIPEILDISGAFHFSEPIWWRVGYSKLK

Query:  GDTLDYLGIPGLHLAGSQGVIVIAICQVILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQ
        GDTLDYLGIPGLHLAGSQGVIVIAICQVILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQ
Subjt:  GDTLDYLGIPGLHLAGSQGVIVIAICQVILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQ

Query:  AALTGKGPVQNLLEHISDPFHNNFLSLLNSW
        AALTGKGPVQNLLEHISDPFHNNFLSLLNSW
Subjt:  AALTGKGPVQNLLEHISDPFHNNFLSLLNSW

A0A6J1FCV0 Chlorophyll a-b binding protein, chloroplastic2.2e-17289.82Show/hide
Query:  MAILQPHTSPSAIPSSSASFYGSSLQQPR----LSNLRNSRSVPYRSTCKASWQELAGVLIFSAIPFTAVKAIANSPLGESLQRQMEKKKEAAIANSSKF
        MA+ QPHTSPSAI SSSASFYGSSLQQ R      NLRNS S+P+R TC ASWQELAGVLIFSAIPFTAVKAIANSP GESLQRQ+EKKK AA+A SSKF
Subjt:  MAILQPHTSPSAIPSSSASFYGSSLQQPR----LSNLRNSRSVPYRSTCKASWQELAGVLIFSAIPFTAVKAIANSPLGESLQRQMEKKKEAAIANSSKF

Query:  KALAREARKDSSWYGEERPRWLGPIPYEYPKYLTGDLPGDYGFDIAGLSKDPVAFQKYFNFEILHARWAMLASLGALIPEILDISGAFHFSEPIWWRVGY
        KALA +ARKDSSWYGE+RPRWLGP+PY YPKYLTG+LPGDYGFDIAGLS+DPVAF+KYFNFEILHARWAMLASLGAL+PEILDI GAFHF+EPIWWRVGY
Subjt:  KALAREARKDSSWYGEERPRWLGPIPYEYPKYLTGDLPGDYGFDIAGLSKDPVAFQKYFNFEILHARWAMLASLGALIPEILDISGAFHFSEPIWWRVGY

Query:  SKLKGDTLDYLGIPGLHLAGSQGVIVIAICQVILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLG
        SKLKGDTLDYLGIPGLHLAGSQGVIVIAICQ ILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLG
Subjt:  SKLKGDTLDYLGIPGLHLAGSQGVIVIAICQVILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLG

Query:  FYSQAALTGKGPVQNLLEHISDPFHNNFLSLLNS
        FYSQAALTGKGP+QNLLEH+SDPFHNNFLSLLNS
Subjt:  FYSQAALTGKGPVQNLLEHISDPFHNNFLSLLNS

A0A6J1IGJ6 Chlorophyll a-b binding protein, chloroplastic4.1e-17188.62Show/hide
Query:  MAILQPHTSPSAIPSSSASFYGSSLQQPR----LSNLRNSRSVPYRSTCKASWQELAGVLIFSAIPFTAVKAIANSPLGESLQRQMEKKKEAAIANSSKF
        MA+  PHTSPSA+ SSSASFYGSSLQQ R      NLRNS S+P+R TC ASWQELAG+LIFSAIPFTAVKAIANSP GESLQRQ+EKKK AA+A SSKF
Subjt:  MAILQPHTSPSAIPSSSASFYGSSLQQPR----LSNLRNSRSVPYRSTCKASWQELAGVLIFSAIPFTAVKAIANSPLGESLQRQMEKKKEAAIANSSKF

Query:  KALAREARKDSSWYGEERPRWLGPIPYEYPKYLTGDLPGDYGFDIAGLSKDPVAFQKYFNFEILHARWAMLASLGALIPEILDISGAFHFSEPIWWRVGY
        KALA +ARKDSSWYGE+RPRWLGP+PY YPKYLTG+LPGDYGFDIAGLS+DPVAF+KYFNFEILHARWAMLASLGAL+PEILDI GAFHF+EPIWWRVGY
Subjt:  KALAREARKDSSWYGEERPRWLGPIPYEYPKYLTGDLPGDYGFDIAGLSKDPVAFQKYFNFEILHARWAMLASLGALIPEILDISGAFHFSEPIWWRVGY

Query:  SKLKGDTLDYLGIPGLHLAGSQGVIVIAICQVILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLG
        SKLKGDTLDYLGIPGLHLAGSQGVIVIAICQ ILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLS+DAAAFEELKVKEIKNGRLAMVAWLG
Subjt:  SKLKGDTLDYLGIPGLHLAGSQGVIVIAICQVILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLG

Query:  FYSQAALTGKGPVQNLLEHISDPFHNNFLSLLNS
        FYSQAALTGKGP+QNLLEH+SDPFHNNFLSLLNS
Subjt:  FYSQAALTGKGPVQNLLEHISDPFHNNFLSLLNS

SwissProt top hitse value%identityAlignment
P07370 Chlorophyll a-b binding protein 1B, chloroplastic2.3e-5449.34Show/hide
Query:  KALAREARKDSSWYGEERPRWLGPIPYEYPKYLTGDLPGDYGFDIAGLSKDPVAFQKYFNFEILHARWAMLASLGALIPEILDISGAFHFSEPIWWRVGY
        KA+A+ A   S WYG +R ++LGP   E P YLTG+ PGDYG+D AGLS DP  F K    E++H RWAML +LG + PE+L  +G   F E +W++ G 
Subjt:  KALAREARKDSSWYGEERPRWLGPIPYEYPKYLTGDLPGDYGFDIAGLSKDPVAFQKYFNFEILHARWAMLASLGALIPEILDISGAFHFSEPIWWRVGY

Query:  SKLKGDTLDYLGIPGLHLAGSQGVIVIAICQVILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLG
               LDYLG P   L  +Q ++ I  CQV+LM   E  R  G     PLG  +  D  YPGG  FDPL L++D  AF ELKVKEIKNGRLAM +  G
Subjt:  SKLKGDTLDYLGIPGLHLAGSQGVIVIAICQVILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLG

Query:  FYSQAALTGKGPVQNLLEHISDPFHNN
        F+ QA +TGKGP++NL +H++DP +NN
Subjt:  FYSQAALTGKGPVQNLLEHISDPFHNN

P14278 Chlorophyll a-b binding protein 4, chloroplastic1.1e-5351.15Show/hide
Query:  SSWYGEERPRWLGPIPYEYPKYLTGDLPGDYGFDIAGLSKDPVAFQKYFNFEILHARWAMLASLGALIPEILDISGAFHFSEPIWWRVGYSKLKGDTLDY
        S WYGE+RP++LGP   + P YLTG+ PGDYG+D AGLS DP  F +    E++H RWAML +LG + PEIL  +G   F E +W++ G        LDY
Subjt:  SSWYGEERPRWLGPIPYEYPKYLTGDLPGDYGFDIAGLSKDPVAFQKYFNFEILHARWAMLASLGALIPEILDISGAFHFSEPIWWRVGYSKLKGDTLDY

Query:  LGIPGLHLAGSQGVIVIAICQVILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQAALTGK
        LG P  +L  +Q ++ I  CQV+LM   E  R  G     PLG  L  D  YPGG  FDPL L+ D  AF ELKVKEIKNGRLAM +  GF+ QA +TGK
Subjt:  LGIPGLHLAGSQGVIVIAICQVILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQAALTGK

Query:  GPVQNLLEHISDPFHNN
        GP++NL +HI+DP  NN
Subjt:  GPVQNLLEHISDPFHNN

P27493 Chlorophyll a-b binding protein 21, chloroplastic1.5e-5348.9Show/hide
Query:  KALAREARKDSSWYGEERPRWLGPIPYEYPKYLTGDLPGDYGFDIAGLSKDPVAFQKYFNFEILHARWAMLASLGALIPEILDISGAFHFSEPIWWRVGY
        K +A+     S WYG +R ++LGP   E P YLTG+ PGDYG+D AGLS DP  F K    E++H RWAML +LG + PE+L  +G   F E +W++ G 
Subjt:  KALAREARKDSSWYGEERPRWLGPIPYEYPKYLTGDLPGDYGFDIAGLSKDPVAFQKYFNFEILHARWAMLASLGALIPEILDISGAFHFSEPIWWRVGY

Query:  SKLKGDTLDYLGIPGLHLAGSQGVIVIAICQVILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLG
               LDYLG P   L  +Q ++ I  CQVILM   E  R  G     PLG  +  D  YPGG  FDPL L++D  AF ELKVKEIKNGRLAM +  G
Subjt:  SKLKGDTLDYLGIPGLHLAGSQGVIVIAICQVILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLG

Query:  FYSQAALTGKGPVQNLLEHISDPFHNN
        F+ QA +TGKGP++NL +H++DP +NN
Subjt:  FYSQAALTGKGPVQNLLEHISDPFHNN

Q9C9K1 Chlorophyll a-b binding protein 7, chloroplastic1.0e-14275.24Show/hide
Query:  SSSASFYGSSLQQPRL--SNLRNSRSV-PYRSTCKASWQELAGVLIFSAIPFTAVKAIANSPLGESLQRQMEKKKEAAIANSSKFKALAREARKDSSWYG
        SS +S Y S    PR+  S  RN  +V   RS C+ASWQELAGVL+FSAIPFTAVKAIANS +G SL+R++E+KK+ A+ NSS+FK+ A+EAR DS WYG
Subjt:  SSSASFYGSSLQQPRL--SNLRNSRSV-PYRSTCKASWQELAGVLIFSAIPFTAVKAIANSPLGESLQRQMEKKKEAAIANSSKFKALAREARKDSSWYG

Query:  EERPRWLGPIPYEYPKYLTGDLPGDYGFDIAGLSKDPVAFQKYFNFEILHARWAMLASLGALIPEILDISGAFHFSEPIWWRVGYSKLKGDTLDYLGIPG
        +ERPRW GPIPY+YP YLTG+LPGDYGFDIAGL KD + F KYFNFEILHARWAMLA+LGALIPE+ D++G FHF+EP+WWRVGYSKL+G+TL+YLGIPG
Subjt:  EERPRWLGPIPYEYPKYLTGDLPGDYGFDIAGLSKDPVAFQKYFNFEILHARWAMLASLGALIPEILDISGAFHFSEPIWWRVGYSKLKGDTLDYLGIPG

Query:  LHLAGSQGVIVIAICQVILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQN
        LH+AGSQGVIVIAICQV+LMVGPEYARYCGIEALEPLGIYLPGDINYPGG LFDPLNLS+D  AFE+LKVKEIKNGRLAMVAWLGFY+QAA TGKGPVQN
Subjt:  LHLAGSQGVIVIAICQVILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQN

Query:  LLEHISDPFHNNFLSLLNS
        L++H+SDP HNN +++L +
Subjt:  LLEHISDPFHNNFLSLLNS

Q9XF87 Chlorophyll a-b binding protein 2.4, chloroplastic1.1e-5351.15Show/hide
Query:  SSWYGEERPRWLGPIPYEYPKYLTGDLPGDYGFDIAGLSKDPVAFQKYFNFEILHARWAMLASLGALIPEILDISGAFHFSEPIWWRVGYSKLKGDTLDY
        S WYG +RP++LGP     P YLTG+ PGDYG+D AGLS DP  F K    E++H+RWAML +LG   PEIL  +G   F E +W++ G        LDY
Subjt:  SSWYGEERPRWLGPIPYEYPKYLTGDLPGDYGFDIAGLSKDPVAFQKYFNFEILHARWAMLASLGALIPEILDISGAFHFSEPIWWRVGYSKLKGDTLDY

Query:  LGIPGLHLAGSQGVIVIAICQVILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQAALTGK
        LG P  +L  +Q ++ I  CQV+LM   E  R  G     PLG  L  D  YPGG  FDPLNL++D  AF ELKVKE+KNGRLAM +  GF+ QA +TGK
Subjt:  LGIPGLHLAGSQGVIVIAICQVILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQAALTGK

Query:  GPVQNLLEHISDPFHNN
        GP++NL +HI+DP  NN
Subjt:  GPVQNLLEHISDPFHNN

Arabidopsis top hitse value%identityAlignment
AT1G29910.1 chlorophyll A/B binding protein 32.2e-5248.85Show/hide
Query:  SSWYGEERPRWLGPIPYEYPKYLTGDLPGDYGFDIAGLSKDPVAFQKYFNFEILHARWAMLASLGALIPEILDISGAFHFSEPIWWRVGYSKLKGDTLDY
        S WYG +R ++LGP   E P YLTG+ PGDYG+D AGLS DP  F +    E++H+RWAML +LG + PE+L  +G   F E +W++ G        LDY
Subjt:  SSWYGEERPRWLGPIPYEYPKYLTGDLPGDYGFDIAGLSKDPVAFQKYFNFEILHARWAMLASLGALIPEILDISGAFHFSEPIWWRVGYSKLKGDTLDY

Query:  LGIPGLHLAGSQGVIVIAICQVILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQAALTGK
        LG P   L  +Q ++ I   QVILM   E  R  G     PLG     D+ YPGG  FDPL L+ D  AF ELKVKE+KNGRLAM +  GF+ QA +TGK
Subjt:  LGIPGLHLAGSQGVIVIAICQVILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQAALTGK

Query:  GPVQNLLEHISDPFHNN
        GP++NL +H++DP +NN
Subjt:  GPVQNLLEHISDPFHNN

AT1G76570.1 Chlorophyll A-B binding family protein7.1e-14475.24Show/hide
Query:  SSSASFYGSSLQQPRL--SNLRNSRSV-PYRSTCKASWQELAGVLIFSAIPFTAVKAIANSPLGESLQRQMEKKKEAAIANSSKFKALAREARKDSSWYG
        SS +S Y S    PR+  S  RN  +V   RS C+ASWQELAGVL+FSAIPFTAVKAIANS +G SL+R++E+KK+ A+ NSS+FK+ A+EAR DS WYG
Subjt:  SSSASFYGSSLQQPRL--SNLRNSRSV-PYRSTCKASWQELAGVLIFSAIPFTAVKAIANSPLGESLQRQMEKKKEAAIANSSKFKALAREARKDSSWYG

Query:  EERPRWLGPIPYEYPKYLTGDLPGDYGFDIAGLSKDPVAFQKYFNFEILHARWAMLASLGALIPEILDISGAFHFSEPIWWRVGYSKLKGDTLDYLGIPG
        +ERPRW GPIPY+YP YLTG+LPGDYGFDIAGL KD + F KYFNFEILHARWAMLA+LGALIPE+ D++G FHF+EP+WWRVGYSKL+G+TL+YLGIPG
Subjt:  EERPRWLGPIPYEYPKYLTGDLPGDYGFDIAGLSKDPVAFQKYFNFEILHARWAMLASLGALIPEILDISGAFHFSEPIWWRVGYSKLKGDTLDYLGIPG

Query:  LHLAGSQGVIVIAICQVILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQN
        LH+AGSQGVIVIAICQV+LMVGPEYARYCGIEALEPLGIYLPGDINYPGG LFDPLNLS+D  AFE+LKVKEIKNGRLAMVAWLGFY+QAA TGKGPVQN
Subjt:  LHLAGSQGVIVIAICQVILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQN

Query:  LLEHISDPFHNNFLSLLNS
        L++H+SDP HNN +++L +
Subjt:  LLEHISDPFHNNFLSLLNS

AT2G05070.1 photosystem II light harvesting complex gene 2.22.0e-5350.23Show/hide
Query:  SSWYGEERPRWLGPIPYEYPKYLTGDLPGDYGFDIAGLSKDPVAFQKYFNFEILHARWAMLASLGALIPEILDISGAFHFSEPIWWRVGYSKLKGDTLDY
        S WYG +RP++LGP     P YLTG+ PGDYG+D AGLS DP  F K    E++H+RWAML +LG   PEIL  +G   F E +W++ G        LDY
Subjt:  SSWYGEERPRWLGPIPYEYPKYLTGDLPGDYGFDIAGLSKDPVAFQKYFNFEILHARWAMLASLGALIPEILDISGAFHFSEPIWWRVGYSKLKGDTLDY

Query:  LGIPGLHLAGSQGVIVIAICQVILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQAALTGK
        LG P  +L  +Q ++ I   QV+LM   E  R  G     PLG  L  D  YPGG  FDPLNL++D  AF ELKVKE+KNGRLAM +  GF+ QA +TGK
Subjt:  LGIPGLHLAGSQGVIVIAICQVILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQAALTGK

Query:  GPVQNLLEHISDPFHNN
        GP++NL +H++DP  NN
Subjt:  GPVQNLLEHISDPFHNN

AT2G05100.1 photosystem II light harvesting complex gene 2.12.0e-5350.23Show/hide
Query:  SSWYGEERPRWLGPIPYEYPKYLTGDLPGDYGFDIAGLSKDPVAFQKYFNFEILHARWAMLASLGALIPEILDISGAFHFSEPIWWRVGYSKLKGDTLDY
        S WYG +RP++LGP     P YLTG+ PGDYG+D AGLS DP  F K    E++H+RWAML +LG   PEIL  +G   F E +W++ G        LDY
Subjt:  SSWYGEERPRWLGPIPYEYPKYLTGDLPGDYGFDIAGLSKDPVAFQKYFNFEILHARWAMLASLGALIPEILDISGAFHFSEPIWWRVGYSKLKGDTLDY

Query:  LGIPGLHLAGSQGVIVIAICQVILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQAALTGK
        LG P  +L  +Q ++ I   QV+LM   E  R  G     PLG  L  D  YPGG  FDPLNL++D  AF ELKVKE+KNGRLAM +  GF+ QA +TGK
Subjt:  LGIPGLHLAGSQGVIVIAICQVILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQAALTGK

Query:  GPVQNLLEHISDPFHNN
        GP++NL +H++DP  NN
Subjt:  GPVQNLLEHISDPFHNN

AT3G27690.1 photosystem II light harvesting complex gene 2.38.1e-5551.15Show/hide
Query:  SSWYGEERPRWLGPIPYEYPKYLTGDLPGDYGFDIAGLSKDPVAFQKYFNFEILHARWAMLASLGALIPEILDISGAFHFSEPIWWRVGYSKLKGDTLDY
        S WYG +RP++LGP     P YLTG+ PGDYG+D AGLS DP  F K    E++H+RWAML +LG   PEIL  +G   F E +W++ G        LDY
Subjt:  SSWYGEERPRWLGPIPYEYPKYLTGDLPGDYGFDIAGLSKDPVAFQKYFNFEILHARWAMLASLGALIPEILDISGAFHFSEPIWWRVGYSKLKGDTLDY

Query:  LGIPGLHLAGSQGVIVIAICQVILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQAALTGK
        LG P  +L  +Q ++ I  CQV+LM   E  R  G     PLG  L  D  YPGG  FDPLNL++D  AF ELKVKE+KNGRLAM +  GF+ QA +TGK
Subjt:  LGIPGLHLAGSQGVIVIAICQVILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQAALTGK

Query:  GPVQNLLEHISDPFHNN
        GP++NL +HI+DP  NN
Subjt:  GPVQNLLEHISDPFHNN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGATACTTCAGCCACACACTTCACCTTCTGCGATTCCATCTTCCTCCGCTTCATTCTACGGGAGTTCTCTTCAGCAACCCCGTTTATCAAATCTTCGAAACAGCCG
CTCCGTTCCCTATCGCTCCACTTGCAAAGCTTCCTGGCAGGAGCTTGCGGGGGTTCTGATATTCTCCGCTATTCCCTTCACGGCTGTGAAAGCCATCGCCAATAGTCCAC
TCGGAGAGTCGCTCCAGAGACAAATGGAAAAGAAGAAAGAAGCTGCCATAGCCAACTCTTCCAAGTTCAAGGCTCTCGCTAGGGAGGCTAGAAAAGATAGTTCCTGGTAT
GGAGAAGAGCGTCCTCGCTGGCTTGGTCCAATACCATATGAGTATCCAAAATATCTAACAGGTGATCTGCCAGGTGACTATGGGTTCGACATTGCAGGCCTGAGCAAGGA
TCCCGTGGCTTTTCAGAAGTACTTCAACTTTGAAATACTGCATGCTCGTTGGGCTATGTTGGCATCCCTTGGGGCTTTAATACCAGAGATCCTAGATATTTCTGGAGCAT
TTCATTTCAGCGAACCCATCTGGTGGCGTGTAGGCTATTCAAAGCTTAAGGGTGATACACTCGACTATCTTGGAATACCAGGGCTGCATTTAGCTGGAAGCCAAGGAGTG
ATTGTCATTGCAATATGCCAAGTCATTTTAATGGTTGGTCCTGAGTACGCAAGATATTGTGGTATAGAGGCATTGGAGCCCCTGGGAATATACCTGCCCGGGGATATAAA
TTATCCAGGTGGTGTGTTGTTTGATCCCTTGAACCTGTCCAAGGATGCTGCAGCATTTGAGGAACTGAAGGTAAAAGAGATTAAAAATGGGCGGTTAGCCATGGTTGCCT
GGCTAGGATTTTACAGTCAAGCAGCATTGACGGGTAAGGGACCAGTCCAAAACCTTCTCGAACATATTTCTGATCCTTTCCACAATAACTTCCTTTCCCTGCTCAACTCT
TGG
mRNA sequenceShow/hide mRNA sequence
ATGGCGATACTTCAGCCACACACTTCACCTTCTGCGATTCCATCTTCCTCCGCTTCATTCTACGGGAGTTCTCTTCAGCAACCCCGTTTATCAAATCTTCGAAACAGCCG
CTCCGTTCCCTATCGCTCCACTTGCAAAGCTTCCTGGCAGGAGCTTGCGGGGGTTCTGATATTCTCCGCTATTCCCTTCACGGCTGTGAAAGCCATCGCCAATAGTCCAC
TCGGAGAGTCGCTCCAGAGACAAATGGAAAAGAAGAAAGAAGCTGCCATAGCCAACTCTTCCAAGTTCAAGGCTCTCGCTAGGGAGGCTAGAAAAGATAGTTCCTGGTAT
GGAGAAGAGCGTCCTCGCTGGCTTGGTCCAATACCATATGAGTATCCAAAATATCTAACAGGTGATCTGCCAGGTGACTATGGGTTCGACATTGCAGGCCTGAGCAAGGA
TCCCGTGGCTTTTCAGAAGTACTTCAACTTTGAAATACTGCATGCTCGTTGGGCTATGTTGGCATCCCTTGGGGCTTTAATACCAGAGATCCTAGATATTTCTGGAGCAT
TTCATTTCAGCGAACCCATCTGGTGGCGTGTAGGCTATTCAAAGCTTAAGGGTGATACACTCGACTATCTTGGAATACCAGGGCTGCATTTAGCTGGAAGCCAAGGAGTG
ATTGTCATTGCAATATGCCAAGTCATTTTAATGGTTGGTCCTGAGTACGCAAGATATTGTGGTATAGAGGCATTGGAGCCCCTGGGAATATACCTGCCCGGGGATATAAA
TTATCCAGGTGGTGTGTTGTTTGATCCCTTGAACCTGTCCAAGGATGCTGCAGCATTTGAGGAACTGAAGGTAAAAGAGATTAAAAATGGGCGGTTAGCCATGGTTGCCT
GGCTAGGATTTTACAGTCAAGCAGCATTGACGGGTAAGGGACCAGTCCAAAACCTTCTCGAACATATTTCTGATCCTTTCCACAATAACTTCCTTTCCCTGCTCAACTCT
TGG
Protein sequenceShow/hide protein sequence
MAILQPHTSPSAIPSSSASFYGSSLQQPRLSNLRNSRSVPYRSTCKASWQELAGVLIFSAIPFTAVKAIANSPLGESLQRQMEKKKEAAIANSSKFKALAREARKDSSWY
GEERPRWLGPIPYEYPKYLTGDLPGDYGFDIAGLSKDPVAFQKYFNFEILHARWAMLASLGALIPEILDISGAFHFSEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGV
IVIAICQVILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQNLLEHISDPFHNNFLSLLNS
W