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MS021748 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS021748
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRING-type E3 ubiquitin transferase
Genome locationscaffold1:159430..159641
RNA-Seq ExpressionMS021748
SyntenyMS021748
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600987.1 putative E3 ubiquitin-protein ligase RHC2A, partial [Cucurbita argyrosperma subsp. sororia]6.8e-1465.75Show/hide
Query:  SMAAASSSWCYQCSRSTNQQPQKSL----CNSGFVKQIEHVLRLVNVEAA-RRRFPAATMYMIGYRSNSGSGL
        SMAAASS WCY+CSR      Q S+    CNSGF++QIEH  RLV+VE+A RRRFPAA MYMIG+RSNSG  L
Subjt:  SMAAASSSWCYQCSRSTNQQPQKSL----CNSGFVKQIEHVLRLVNVEAA-RRRFPAATMYMIGYRSNSGSGL

XP_022138905.1 probable E3 ubiquitin-protein ligase RHC2A [Momordica charantia]2.8e-1569.86Show/hide
Query:  SMAAASSSWCYQCSRSTNQQPQKSL----CNSGFVKQIEHVLRLVNVEAA-RRRFPAATMYMIGYRSNSGSGL
        SMAAASS WCY+CSR      Q S+    CNSGFV+QIEH  RLVNVEAA RRRFPAA MYMIG+RSNSG  L
Subjt:  SMAAASSSWCYQCSRSTNQQPQKSL----CNSGFVKQIEHVLRLVNVEAA-RRRFPAATMYMIGYRSNSGSGL

XP_022957087.1 probable E3 ubiquitin-protein ligase RHC2A [Cucurbita moschata]8.9e-1465.75Show/hide
Query:  SMAAASSSWCYQCSRSTNQQPQKSL----CNSGFVKQIEHVLRLVNVEAA-RRRFPAATMYMIGYRSNSGSGL
        SMAAASS WCY+CSR      Q S+    CNSGF++QIEH  RLV+VE+A RRRFPAA MYMIG+RSNSG  L
Subjt:  SMAAASSSWCYQCSRSTNQQPQKSL----CNSGFVKQIEHVLRLVNVEAA-RRRFPAATMYMIGYRSNSGSGL

XP_022987501.1 probable E3 ubiquitin-protein ligase RHC2A [Cucurbita maxima]6.8e-1465.75Show/hide
Query:  SMAAASSSWCYQCSRSTNQQPQKSL----CNSGFVKQIEHVLRLVNVEAA-RRRFPAATMYMIGYRSNSGSGL
        SMAAASS WCY+CSR      Q S+    CNSGF++QIEH  RLV+VE+A RRRFPAA MYMIG+RSNSG  L
Subjt:  SMAAASSSWCYQCSRSTNQQPQKSL----CNSGFVKQIEHVLRLVNVEAA-RRRFPAATMYMIGYRSNSGSGL

XP_038890198.1 probable E3 ubiquitin-protein ligase RHC2A [Benincasa hispida]3.1e-1467.12Show/hide
Query:  SMAAASSSWCYQCSRSTNQQPQKSL----CNSGFVKQIEHVLRLVNVEAA-RRRFPAATMYMIGYRSNSGSGL
        SMAAASS WCY+CSR      Q S+    CNSGF++QIE   RLVNVEAA RRRFPAA MYMIG+RSNSG  L
Subjt:  SMAAASSSWCYQCSRSTNQQPQKSL----CNSGFVKQIEHVLRLVNVEAA-RRRFPAATMYMIGYRSNSGSGL

TrEMBL top hitse value%identityAlignment
A0A0A0KLW4 RING-type E3 ubiquitin transferase5.6e-1467.12Show/hide
Query:  SMAAASSSWCYQCSRSTNQQPQKSL----CNSGFVKQIEHVLRLVNVEAA-RRRFPAATMYMIGYRSNSGSGL
        SMAAASS WC++CS       Q S+    CNSGFV+QIEH  RLVNVEAA RRRFPAA MYMIG RSNSG  L
Subjt:  SMAAASSSWCYQCSRSTNQQPQKSL----CNSGFVKQIEHVLRLVNVEAA-RRRFPAATMYMIGYRSNSGSGL

A0A5A7UA14 RING-type E3 ubiquitin transferase1.3e-1367.12Show/hide
Query:  SMAAASSSWCYQCSRSTNQQPQKSL----CNSGFVKQIEHVLRLVNVEAA-RRRFPAATMYMIGYRSNSGSGL
        SMAAASS WCY+CS       Q S+    CNSGFV+QIE   RLVNVEAA RRRFPAA MYMIG RSNSG  L
Subjt:  SMAAASSSWCYQCSRSTNQQPQKSL----CNSGFVKQIEHVLRLVNVEAA-RRRFPAATMYMIGYRSNSGSGL

A0A6J1CAT7 RING-type E3 ubiquitin transferase1.3e-1569.86Show/hide
Query:  SMAAASSSWCYQCSRSTNQQPQKSL----CNSGFVKQIEHVLRLVNVEAA-RRRFPAATMYMIGYRSNSGSGL
        SMAAASS WCY+CSR      Q S+    CNSGFV+QIEH  RLVNVEAA RRRFPAA MYMIG+RSNSG  L
Subjt:  SMAAASSSWCYQCSRSTNQQPQKSL----CNSGFVKQIEHVLRLVNVEAA-RRRFPAATMYMIGYRSNSGSGL

A0A6J1GY71 RING-type E3 ubiquitin transferase4.3e-1465.75Show/hide
Query:  SMAAASSSWCYQCSRSTNQQPQKSL----CNSGFVKQIEHVLRLVNVEAA-RRRFPAATMYMIGYRSNSGSGL
        SMAAASS WCY+CSR      Q S+    CNSGF++QIEH  RLV+VE+A RRRFPAA MYMIG+RSNSG  L
Subjt:  SMAAASSSWCYQCSRSTNQQPQKSL----CNSGFVKQIEHVLRLVNVEAA-RRRFPAATMYMIGYRSNSGSGL

A0A6J1JEE7 RING-type E3 ubiquitin transferase3.3e-1465.75Show/hide
Query:  SMAAASSSWCYQCSRSTNQQPQKSL----CNSGFVKQIEHVLRLVNVEAA-RRRFPAATMYMIGYRSNSGSGL
        SMAAASS WCY+CSR      Q S+    CNSGF++QIEH  RLV+VE+A RRRFPAA MYMIG+RSNSG  L
Subjt:  SMAAASSSWCYQCSRSTNQQPQKSL----CNSGFVKQIEHVLRLVNVEAA-RRRFPAATMYMIGYRSNSGSGL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTTTTCTCGATGGCAGCGGCGTCTTCCTCTTGGTGCTACCAATGCAGTCGCTCCACAAACCAACAACCTCAAAAGTCGCTATGTAATAGTGGGTTTGTGAAGCAGATCGA
GCATGTGTTGAGGTTGGTGAACGTGGAAGCAGCACGGAGGAGGTTTCCCGCTGCGACCATGTACATGATTGGCTACCGCTCGAATTCGGGATCTGGGCTT
mRNA sequenceShow/hide mRNA sequence
GTTTTCTCGATGGCAGCGGCGTCTTCCTCTTGGTGCTACCAATGCAGTCGCTCCACAAACCAACAACCTCAAAAGTCGCTATGTAATAGTGGGTTTGTGAAGCAGATCGA
GCATGTGTTGAGGTTGGTGAACGTGGAAGCAGCACGGAGGAGGTTTCCCGCTGCGACCATGTACATGATTGGCTACCGCTCGAATTCGGGATCTGGGCTT
Protein sequenceShow/hide protein sequence
VFSMAAASSSWCYQCSRSTNQQPQKSLCNSGFVKQIEHVLRLVNVEAARRRFPAATMYMIGYRSNSGSGL