; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS021752 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS021752
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionsplicing factor U2af small subunit B-like
Genome locationscaffold1:173565..174386
RNA-Seq ExpressionMS021752
SyntenyMS021752
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0089701 - U2AF (cellular component)
GO:0030628 - pre-mRNA 3'-splice site binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR000571 - Zinc finger, CCCH-type
IPR003954 - RNA recognition motif domain, eukaryote
IPR009145 - U2 auxiliary factor small subunit
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022142994.1 splicing factor U2af small subunit B-like [Momordica charantia]2.2e-153100Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS

Query:  LSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEK
        LSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEK
Subjt:  LSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEK

XP_022936161.1 splicing factor U2af small subunit B-like [Cucurbita moschata]3.5e-14696.01Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIE LNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYR--RSRSRS
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGR+RGYR  RSRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYR--RSRSRS

Query:  RSLSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEK
        RSLSPRNRK+ DRRERD+RDR+ RGNGRSKER+DRYDRDGGRRRHGSPRRSRSPVREGS ERRARIEQWNREREEK
Subjt:  RSLSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEK

XP_022941119.1 splicing factor U2af small subunit B-like [Cucurbita moschata]4.4e-14997.82Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLN+
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG-RYRGYRRSRSRSR
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG R+RGYRRSRSRSR
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG-RYRGYRRSRSRSR

Query:  SLSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEK
        SLSPRNRKDYDRRERD+RDRD RGNGRSKER DRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEK
Subjt:  SLSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEK

XP_023521110.1 splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo]1.1e-14796.72Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIE LNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGR+RGYRRSRSRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS

Query:  LSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEK
        LSPRNRK+ DRRERD+RDR+ RGNGRSKER+DRYDRDGGRRRHGSPRRSRSPVREGS ERRARIEQWNREREEK
Subjt:  LSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEK

XP_023525325.1 splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo]1.3e-14897.45Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLN+
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG-RYRGYRRSRSRSR
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG R+RGYRRSRSRSR
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG-RYRGYRRSRSRSR

Query:  SLSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEK
        SLSPRNRKDYDRRERD+RDRD RGNGRSKER DR+DRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEK
Subjt:  SLSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEK

TrEMBL top hitse value%identityAlignment
A0A5A7VFL1 Splicing factor U2af small subunit B-like1.0e-14394.96Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYR SRSRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS

Query:  LSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGRRRHGSPR--RSRSPV--REGSEERRARIEQWNREREEK
        LSPRNRK+YDRRERD+R+R++RGNGRSKE   R+DRDGGRRRHGSPR  RSRSPV  REGSEERRARIEQWNREREEK
Subjt:  LSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGRRRHGSPR--RSRSPV--REGSEERRARIEQWNREREEK

A0A6J1CN17 splicing factor U2af small subunit B-like1.1e-153100Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS

Query:  LSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEK
        LSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEK
Subjt:  LSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEK

A0A6J1F6R3 splicing factor U2af small subunit B-like1.7e-14696.01Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIE LNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYR--RSRSRS
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGR+RGYR  RSRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYR--RSRSRS

Query:  RSLSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEK
        RSLSPRNRK+ DRRERD+RDR+ RGNGRSKER+DRYDRDGGRRRHGSPRRSRSPVREGS ERRARIEQWNREREEK
Subjt:  RSLSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEK

A0A6J1FSM7 splicing factor U2af small subunit B-like2.1e-14997.82Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLN+
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG-RYRGYRRSRSRSR
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG R+RGYRRSRSRSR
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG-RYRGYRRSRSRSR

Query:  SLSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEK
        SLSPRNRKDYDRRERD+RDRD RGNGRSKER DRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEK
Subjt:  SLSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEK

A0A6J1IV82 splicing factor U2af small subunit B-like2.1e-14997.82Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLN+
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG-RYRGYRRSRSRSR
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG R+RGYRRSRSRSR
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG-RYRGYRRSRSRSR

Query:  SLSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEK
        SLSPRNRKDYDRRERD+RDRD RGNGRSKER DRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEK
Subjt:  SLSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEK

SwissProt top hitse value%identityAlignment
A1A4K8 Splicing factor U2AF 35 kDa subunit2.2e-6652.48Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEEL-GKFGEIESLN
        MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S T+ L N+Y+ P   +   D     +   ++QEH+++F+E+++ E+  K+GE+E +N
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEEL-GKFGEIESLN

Query:  VCDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSR
        VCDNL DH++GNVYV+FR E+ A  A+  L  R+++G+PI A+ SPVTDFREA CRQYE   C RGG+CNFMH+K I ++LRR+L+GR R   RSRSRSR
Subjt:  VCDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSR

Query:  SLSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGRR
            R+      R+R        G GR ++R    DR+   R
Subjt:  SLSPRNRKDYDRRERDFRDRDFRGNGRSKERYDRYDRDGGRR

Q6AUG0 Splicing factor U2af small subunit B3.5e-11774.18Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPT+SPT++L+NMYQRPDMITPGVDAQGQPIDP K+QEHFEDFYEDIYEEL KFGE+E+LNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS
        CDNLADHMIGNVYVQFREE+QA AA  ALQGRFYSGRPII ++SPVTDFREATCRQ+EEN+CNRGGYCNFMHVK IG++LRRKL+G     RRS  RSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS

Query:  LSPRNR-----KDYDRRERD--------------------FRDRD-FRGNG-----RSKERYDRYDRDGGRRRHGS-PRRSRSPVREGSEERRARIEQWN
         SPR+R     +D  RRERD                    +R  D +RG G         RYDRYD DGGRRRHGS PRR+RSPVRE SEERRA+IEQWN
Subjt:  LSPRNR-----KDYDRRERD--------------------FRDRD-FRGNG-----RSKERYDRYDRDGGRRRHGS-PRRSRSPVREGSEERRARIEQWN

Query:  REREEK
        REREEK
Subjt:  REREEK

Q9FMY5 Splicing factor U2af small subunit B3.4e-12885.41Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVD QGQP+DP KIQ+HFEDFYEDI+EEL KFGE+ESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYRR-SRSRS
        CDNLADHMIGNVYV F+EED AAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK I ++LRRKLFGRY R YRR SRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYRR-SRSRS

Query:  RSLSPRNRKDYDR-RER-DFRDRDFRGNG-RSKERYDRYDRD-GGRRRHGSPRRSRSP--VREGSEERRARIEQWNREREE
        RS+SPR ++++ R RER D RDRD  GNG RS +R +R+DRD GGRRRHGSP+RSRSP  VREGSEERRARIEQWNRER+E
Subjt:  RSLSPRNRKDYDR-RER-DFRDRDFRGNG-RSKERYDRYDRD-GGRRRHGSPRRSRSP--VREGSEERRARIEQWNREREE

Q9S709 Splicing factor U2af small subunit A4.9e-12782.47Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQP+DPRKIQEHFEDF+ED++EELGKFGEIESLN+
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYR---RSRS
        CDNLADHMIGNVYVQF+EEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVK++ ++LRRKLFGRY R YR   RSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYR---RSRS

Query:  RSRSLSPRNRKDYDRRE---RDF----RDRDFRGNG---RSKERYDRYDRDGGR-RRHGSPRRSRSP--VREGSEERRARIEQWNREREEK
        RSRS+SPRN++D DRR+   R+F    RDR+F  +G   RS ER +R +RDG R RR  SP+R  SP   REGSEERRARIEQWNREREEK
Subjt:  RSRSLSPRNRKDYDRRE---RDF----RDRDFRGNG---RSKERYDRYDRDGGR-RRHGSPRRSRSP--VREGSEERRARIEQWNREREEK

Q9ZQW8 Splicing factor U2af small subunit A3.4e-11274.65Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN+P++SPTLLLSNMY RPDMITPG+DAQG PIDP KIQ  FEDFYEDI+EEL K+GEIESL+V
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS
        CDN ADHMIGNVYVQFREEDQAA ALQAL GR+YSGRPII +FSPV+DFREATCRQYEEN+CNRGGYCNFMHVK IG+DLR++LFG     RRS S  RS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRS

Query:  LSP---RNRKDYDRRERD-FRDRD----------FRGNG-RSKERY-DRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNRERE
         SP     R+DYDRR     RD D          +RG   RS ER+   YD DG RRRH S  R+RSPVR+GSEERRA+IEQWNRERE
Subjt:  LSP---RNRKDYDRRERD-FRDRD----------FRGNG-RSKERY-DRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNRERE

Arabidopsis top hitse value%identityAlignment
AT1G10320.1 Zinc finger C-x8-C-x5-C-x3-H type family protein9.1e-2832.24Show/hide
Query:  FGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHM
        FGTE+D+ +CPF+ K GACR G RCSR+H  P  S TLL+ NMY  P  IT   D +G      + +  +E+FYED++ E  K+GE+ +  VC N + H+
Subjt:  FGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHM

Query:  IGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN---NCNRGGYCNFMH-VKMIGKDLR----------------RKLFG--
         GNVYV +R  + A  A Q++ GR+++G+ +  +F  ++ ++ A C +Y ++    C+RG  CNF+H  +  G D                    LFG  
Subjt:  IGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN---NCNRGGYCNFMH-VKMIGKDLR----------------RKLFG--

Query:  --RYRGYRRSRSRSRS---LSPRNRKDYDRRER-------------DFRDRDFRGNGRSKERYDRYDRDGGRRRHG--SPRRSRSPVREGSEERRARIEQ
          ++  +  S S + S   LS  + +   RR R              +R R + G+ +   R D+  R       G  SP R  S  RE  +ERR   + 
Subjt:  --RYRGYRRSRSRSRS---LSPRNRKDYDRRER-------------DFRDRDFRGNGRSKERYDRYDRDGGRRRHG--SPRRSRSPVREGSEERRARIEQ

Query:  WNRE
         +R+
Subjt:  WNRE

AT1G27650.1 U2 snRNP auxiliary factor small subunit, putative3.5e-12882.47Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQP+DPRKIQEHFEDF+ED++EELGKFGEIESLN+
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYR---RSRS
        CDNLADHMIGNVYVQF+EEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVK++ ++LRRKLFGRY R YR   RSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYR---RSRS

Query:  RSRSLSPRNRKDYDRRE---RDF----RDRDFRGNG---RSKERYDRYDRDGGR-RRHGSPRRSRSP--VREGSEERRARIEQWNREREEK
        RSRS+SPRN++D DRR+   R+F    RDR+F  +G   RS ER +R +RDG R RR  SP+R  SP   REGSEERRARIEQWNREREEK
Subjt:  RSRSLSPRNRKDYDRRE---RDF----RDRDFRGNG---RSKERYDRYDRDGGR-RRHGSPRRSRSP--VREGSEERRARIEQWNREREEK

AT1G27650.2 U2 snRNP auxiliary factor small subunit, putative1.7e-9578.84Show/hide
Query:  MYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFR
        MYQRPDMITPGVDAQGQP+DPRKIQEHFEDF+ED++EELGKFGEIESLN+CDNLADHMIGNVYVQF+EEDQAAAALQALQGRFYSGRPIIADFSPVTDFR
Subjt:  MYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFR

Query:  EATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYR---RSRSRSRSLSPRNRKDYDRRE---RDF----RDRDFRGNG---RSKERYDRYDR
        EATCRQYEENNCNRGGYCNFMHVK++ ++LRRKLFGRY R YR   RSRSRSRS+SPRN++D DRR+   R+F    RDR+F  +G   RS ER +R +R
Subjt:  EATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYR---RSRSRSRSLSPRNRKDYDRRE---RDF----RDRDFRGNG---RSKERYDRYDR

Query:  DGGR-RRHGSPRRSRSP--VREGSEERRARIEQWNREREEK
        DG R RR  SP+R  SP   REGSEERRARIEQWNREREEK
Subjt:  DGGR-RRHGSPRRSRSP--VREGSEERRARIEQWNREREEK

AT5G42820.1 Zinc finger C-x8-C-x5-C-x3-H type family protein2.4e-12985.41Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVD QGQP+DP KIQ+HFEDFYEDI+EEL KFGE+ESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYRR-SRSRS
        CDNLADHMIGNVYV F+EED AAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK I ++LRRKLFGRY R YRR SRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYRR-SRSRS

Query:  RSLSPRNRKDYDR-RER-DFRDRDFRGNG-RSKERYDRYDRD-GGRRRHGSPRRSRSP--VREGSEERRARIEQWNREREE
        RS+SPR ++++ R RER D RDRD  GNG RS +R +R+DRD GGRRRHGSP+RSRSP  VREGSEERRARIEQWNRER+E
Subjt:  RSLSPRNRKDYDR-RER-DFRDRDFRGNG-RSKERYDRYDRD-GGRRRHGSPRRSRSP--VREGSEERRARIEQWNREREE

AT5G42820.2 Zinc finger C-x8-C-x5-C-x3-H type family protein2.4e-12985.41Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVD QGQP+DP KIQ+HFEDFYEDI+EEL KFGE+ESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYRR-SRSRS
        CDNLADHMIGNVYV F+EED AAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK I ++LRRKLFGRY R YRR SRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYRR-SRSRS

Query:  RSLSPRNRKDYDR-RER-DFRDRDFRGNG-RSKERYDRYDRD-GGRRRHGSPRRSRSP--VREGSEERRARIEQWNREREE
        RS+SPR ++++ R RER D RDRD  GNG RS +R +R+DRD GGRRRHGSP+RSRSP  VREGSEERRARIEQWNRER+E
Subjt:  RSLSPRNRKDYDR-RER-DFRDRDFRGNG-RSKERYDRYDRD-GGRRRHGSPRRSRSP--VREGSEERRARIEQWNREREE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGAACACTTAGCCTCAATATTTGGCACCGAAAAGGACCGTGTCAACTGCCCCTTCTATTTCAAGATCGGCGCCTGCCGTCATGGAGATCGCTGCTCTCGGCTCCA
CAACCGCCCCACTATTTCGCCGACTCTTCTCTTATCGAACATGTACCAGCGCCCCGACATGATCACCCCTGGCGTAGATGCTCAGGGTCAGCCCATAGATCCCCGAAAAA
TTCAGGAACACTTTGAGGATTTTTATGAAGACATCTACGAGGAACTCGGAAAGTTCGGTGAGATCGAGAGCCTCAACGTCTGTGATAATCTCGCCGACCACATGATTGGC
AATGTCTACGTTCAGTTTAGGGAGGAGGACCAGGCTGCTGCCGCACTCCAAGCGCTGCAAGGTCGGTTCTACTCTGGTCGACCCATTATTGCTGATTTTTCTCCCGTGAC
TGATTTCCGGGAGGCCACATGCCGCCAATACGAGGAGAATAACTGTAATCGAGGCGGGTATTGTAATTTTATGCATGTTAAGATGATTGGGAAGGATTTGAGGAGGAAGC
TGTTCGGTAGGTATCGGGGATATAGACGGAGCCGGAGCAGGAGTAGAAGTTTGAGTCCGCGCAACCGGAAGGACTATGATAGGCGTGAGAGGGATTTTAGAGATCGTGAC
TTTCGCGGAAACGGACGGAGCAAGGAACGATATGATAGGTATGATAGGGATGGGGGAAGGAGAAGGCATGGTAGCCCGAGACGAAGCAGAAGCCCTGTGAGAGAAGGGAG
TGAAGAGCGCCGAGCCCGGATTGAACAGTGGAACCGAGAAAGGGAGGAGAAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTGAACACTTAGCCTCAATATTTGGCACCGAAAAGGACCGTGTCAACTGCCCCTTCTATTTCAAGATCGGCGCCTGCCGTCATGGAGATCGCTGCTCTCGGCTCCA
CAACCGCCCCACTATTTCGCCGACTCTTCTCTTATCGAACATGTACCAGCGCCCCGACATGATCACCCCTGGCGTAGATGCTCAGGGTCAGCCCATAGATCCCCGAAAAA
TTCAGGAACACTTTGAGGATTTTTATGAAGACATCTACGAGGAACTCGGAAAGTTCGGTGAGATCGAGAGCCTCAACGTCTGTGATAATCTCGCCGACCACATGATTGGC
AATGTCTACGTTCAGTTTAGGGAGGAGGACCAGGCTGCTGCCGCACTCCAAGCGCTGCAAGGTCGGTTCTACTCTGGTCGACCCATTATTGCTGATTTTTCTCCCGTGAC
TGATTTCCGGGAGGCCACATGCCGCCAATACGAGGAGAATAACTGTAATCGAGGCGGGTATTGTAATTTTATGCATGTTAAGATGATTGGGAAGGATTTGAGGAGGAAGC
TGTTCGGTAGGTATCGGGGATATAGACGGAGCCGGAGCAGGAGTAGAAGTTTGAGTCCGCGCAACCGGAAGGACTATGATAGGCGTGAGAGGGATTTTAGAGATCGTGAC
TTTCGCGGAAACGGACGGAGCAAGGAACGATATGATAGGTATGATAGGGATGGGGGAAGGAGAAGGCATGGTAGCCCGAGACGAAGCAGAAGCCCTGTGAGAGAAGGGAG
TGAAGAGCGCCGAGCCCGGATTGAACAGTGGAACCGAGAAAGGGAGGAGAAG
Protein sequenceShow/hide protein sequence
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIG
NVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRRSRSRSRSLSPRNRKDYDRRERDFRDRD
FRGNGRSKERYDRYDRDGGRRRHGSPRRSRSPVREGSEERRARIEQWNREREEK