CuGenDBv2

Gene ID	MS021758
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	AT-rich interactive domain-containing protein 6
Genome location	scaffold1:211238..211357
RNA-Seq Expression	MS021758
Synteny	MS021758
Gene Ontology terms	GO:0006357 - regulation of transcription by RNA polymerase II (biological process) GO:0005634 - nucleus (cellular component) GO:0003677 - DNA binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7037977.1 AT-rich interactive domain-containing protein 3, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.4e-11

84.44

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Query:  MAEADESGTPEDRVAFMKEIENFHRERA-----PKFYGEPLNCLK
        MAE DESGTPEDRV FMKEIENFHRERA     PKFYGEPLNCLK
Subjt:  MAEADESGTPEDRVAFMKEIENFHRERA-----PKFYGEPLNCLK

XP_022941348.1 AT-rich interactive domain-containing protein 6 isoform X2 [Cucurbita moschata]

2.4e-11

84.44

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Query:  MAEADESGTPEDRVAFMKEIENFHRERA-----PKFYGEPLNCLK
        MAE DESGTPEDRV FMKEIENFHRERA     PKFYGEPLNCLK
Subjt:  MAEADESGTPEDRVAFMKEIENFHRERA-----PKFYGEPLNCLK

XP_022981998.1 AT-rich interactive domain-containing protein 6 [Cucurbita maxima]

6.2e-12

86.67

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Query:  MAEADESGTPEDRVAFMKEIENFHRERA-----PKFYGEPLNCLK
        MAE DESGTPEDRVAFMKEIENFHRERA     PKFYGEPLNCLK
Subjt:  MAEADESGTPEDRVAFMKEIENFHRERA-----PKFYGEPLNCLK

XP_023525687.1 AT-rich interactive domain-containing protein 5 isoform X1 [Cucurbita pepo subsp. pepo]

6.2e-12

86.67

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Query:  MAEADESGTPEDRVAFMKEIENFHRERA-----PKFYGEPLNCLK
        MAE DESGTPEDRVAFMKEIENFHRERA     PKFYGEPLNCLK
Subjt:  MAEADESGTPEDRVAFMKEIENFHRERA-----PKFYGEPLNCLK

XP_023525688.1 AT-rich interactive domain-containing protein 5 isoform X2 [Cucurbita pepo subsp. pepo]

6.2e-12

86.67

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Query:  MAEADESGTPEDRVAFMKEIENFHRERA-----PKFYGEPLNCLK
        MAE DESGTPEDRVAFMKEIENFHRERA     PKFYGEPLNCLK
Subjt:  MAEADESGTPEDRVAFMKEIENFHRERA-----PKFYGEPLNCLK

TrEMBL top hits

e value

%identity

Alignment

A0A2P2KFL3 Transcription factor

1.8e-09

73.33

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Query:  MAEADESGTPEDRVAFMKEIENFHRERA-----PKFYGEPLNCLK
        M EADESGTPE+R AFMKE+E FHR+ A     PKFYGEPLNCLK
Subjt:  MAEADESGTPEDRVAFMKEIENFHRERA-----PKFYGEPLNCLK

A0A2P2KFP3 Uncharacterized protein MANES_05G129200

1.8e-09

73.33

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Query:  MAEADESGTPEDRVAFMKEIENFHRERA-----PKFYGEPLNCLK
        M EADESGTPE+R AFMKE+E FHR+ A     PKFYGEPLNCLK
Subjt:  MAEADESGTPEDRVAFMKEIENFHRERA-----PKFYGEPLNCLK

A0A6J1FKV6 AT-rich interactive domain-containing protein 6 isoform X1

1.1e-11

84.44

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Query:  MAEADESGTPEDRVAFMKEIENFHRERA-----PKFYGEPLNCLK
        MAE DESGTPEDRV FMKEIENFHRERA     PKFYGEPLNCLK
Subjt:  MAEADESGTPEDRVAFMKEIENFHRERA-----PKFYGEPLNCLK

A0A6J1FRV5 AT-rich interactive domain-containing protein 6 isoform X2

1.1e-11

84.44

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Query:  MAEADESGTPEDRVAFMKEIENFHRERA-----PKFYGEPLNCLK
        MAE DESGTPEDRV FMKEIENFHRERA     PKFYGEPLNCLK
Subjt:  MAEADESGTPEDRVAFMKEIENFHRERA-----PKFYGEPLNCLK

A0A6J1J3M7 AT-rich interactive domain-containing protein 6

3.0e-12

86.67

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Query:  MAEADESGTPEDRVAFMKEIENFHRERA-----PKFYGEPLNCLK
        MAE DESGTPEDRVAFMKEIENFHRERA     PKFYGEPLNCLK
Subjt:  MAEADESGTPEDRVAFMKEIENFHRERA-----PKFYGEPLNCLK

SwissProt top hits

e value

%identity

Alignment

C0SUW7 AT-rich interactive domain-containing protein 6

5.3e-06

53.66

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Query:  DESGTPEDRVAFMKEIENFHRE-----RAPKFYGEPLNCLK
        DE+GTP ++VAF++E+E F++E     + PKFYG+PLN LK
Subjt:  DESGTPEDRVAFMKEIENFHRE-----RAPKFYGEPLNCLK

Q0WNR6 AT-rich interactive domain-containing protein 5

5.7e-08

58.14

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Query:  EADESGTPEDRVAFMKEIENFHRE-----RAPKFYGEPLNCLK
        E DE+G P+D+ AF+KE+E F++E     +APKFYG+PLNCLK
Subjt:  EADESGTPEDRVAFMKEIENFHRE-----RAPKFYGEPLNCLK

Q940Y3 AT-rich interactive domain-containing protein 3

4.8e-07

59.09

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Query:  AEADESGTPEDRVAFMKEIENFHRER-----APKFYGEPLNCLK
        ++ +ESGT ED+ AFMKE+++F RER      PKFYGE LNCLK
Subjt:  AEADESGTPEDRVAFMKEIENFHRER-----APKFYGEPLNCLK

Arabidopsis top hits

e value

%identity

Alignment

AT1G76510.1 ARID/BRIGHT DNA-binding domain-containing protein

4.0e-09

58.14

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Query:  EADESGTPEDRVAFMKEIENFHRE-----RAPKFYGEPLNCLK
        E DE+G P+D+ AF+KE+E F++E     +APKFYG+PLNCLK
Subjt:  EADESGTPEDRVAFMKEIENFHRE-----RAPKFYGEPLNCLK

AT1G76510.2 ARID/BRIGHT DNA-binding domain-containing protein

4.0e-09

58.14

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Query:  EADESGTPEDRVAFMKEIENFHRE-----RAPKFYGEPLNCLK
        E DE+G P+D+ AF+KE+E F++E     +APKFYG+PLNCLK
Subjt:  EADESGTPEDRVAFMKEIENFHRE-----RAPKFYGEPLNCLK

AT1G76510.3 ARID/BRIGHT DNA-binding domain-containing protein

4.0e-09

58.14

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Query:  EADESGTPEDRVAFMKEIENFHRE-----RAPKFYGEPLNCLK
        E DE+G P+D+ AF+KE+E F++E     +APKFYG+PLNCLK
Subjt:  EADESGTPEDRVAFMKEIENFHRE-----RAPKFYGEPLNCLK

AT2G17410.1 ARID/BRIGHT DNA-binding domain-containing protein

3.4e-08

59.09

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Query:  AEADESGTPEDRVAFMKEIENFHRER-----APKFYGEPLNCLK
        ++ +ESGT ED+ AFMKE+++F RER      PKFYGE LNCLK
Subjt:  AEADESGTPEDRVAFMKEIENFHRER-----APKFYGEPLNCLK

AT2G17410.2 ARID/BRIGHT DNA-binding domain-containing protein

3.4e-08

59.09

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Query:  AEADESGTPEDRVAFMKEIENFHRER-----APKFYGEPLNCLK
        ++ +ESGT ED+ AFMKE+++F RER      PKFYGE LNCLK
Subjt:  AEADESGTPEDRVAFMKEIENFHRER-----APKFYGEPLNCLK

Sequences

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CDS sequence

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ATGGCCGAAGCTGATGAATCAGGGACACCGGAGGATAGGGTGGCATTTATGAAGGAGATTGAGAATTTCCATAGGGAGAGGGCTCCTAAGTTCTATGGGGAGCCACTAAA
TTGTTTGAAG

mRNA sequence

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ATGGCCGAAGCTGATGAATCAGGGACACCGGAGGATAGGGTGGCATTTATGAAGGAGATTGAGAATTTCCATAGGGAGAGGGCTCCTAAGTTCTATGGGGAGCCACTAAA
TTGTTTGAAG

Protein sequence

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MAEADESGTPEDRVAFMKEIENFHRERAPKFYGEPLNCLK

MS021758 (gene) of Bitter gourd (TR) v1 genome