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MS021786 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS021786
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionHigh mobility group B protein 2
Genome locationscaffold1:337921..339112
RNA-Seq ExpressionMS021786
SyntenyMS021786
Gene Ontology termsGO:0006333 - chromatin assembly or disassembly (biological process)
GO:0000785 - chromatin (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003682 - chromatin binding (molecular function)
GO:0030527 - structural constituent of chromatin (molecular function)
InterPro domainsIPR009071 - High mobility group box domain
IPR031061 - High mobility group protein HMGB, plant
IPR036910 - High mobility group box domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004145545.1 HMG1/2-like protein [Cucumis sativus]6.9e-4783.45Show/hide
Query:  MKGGKSKSESKKADAKLSVKKGAAKAGATRG-KKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRK
        MKGGKS+SESKKAD KL+VKKGAA   A +G KKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS               AEKAPYIAKADKRK
Subjt:  MKGGKSKSESKKADAKLSVKKGAAKAGATRG-KKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRK

Query:  VEYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEE
        VEYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEE
Subjt:  VEYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEE

XP_008452973.1 PREDICTED: HMG1/2-like protein [Cucumis melo]2.4e-4783.33Show/hide
Query:  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRKV
        MKGGKSKSESKKAD KL+VKKGA  AG    KKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS               AEKAPYIAKADKRKV
Subjt:  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRKV

Query:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEE
        EYEKNMKAYNKKQASGANAA+EDESEKSMSEVNDDEDGDEGSEE
Subjt:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEE

XP_022142588.1 HMG1/2-like protein [Momordica charantia]1.7e-5389.58Show/hide
Query:  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRKV
        MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS               AEKAPYIAKADKRKV
Subjt:  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRKV

Query:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEE
        EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEE
Subjt:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEE

XP_022936925.1 HMG1/2-like protein [Cucurbita moschata]3.4e-4680.56Show/hide
Query:  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRKV
        MKGGKSKSESKKAD KL+VKKGAA AG    KKA KDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS               A+KAPY+AKADKRKV
Subjt:  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRKV

Query:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEE
        EYEK MKAYNKKQASGANAAEEDESEKS+SEVNDDE+GDEGSEE
Subjt:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEE

XP_038896795.1 HMG1/2-like protein isoform X1 [Benincasa hispida]9.6e-4983.33Show/hide
Query:  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRKV
        MKGGKSKS+SKKADAKL+VKKGAA AG    KKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS               AEKAPYIAKADKRK+
Subjt:  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRKV

Query:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEE
        EYEKNMKAYNKKQASGANA EEDESEKSMSEVNDDEDGDEGSEE
Subjt:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEE

TrEMBL top hitse value%identityAlignment
A0A1S3BW96 HMG1/2-like protein1.1e-4783.33Show/hide
Query:  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRKV
        MKGGKSKSESKKAD KL+VKKGA  AG    KKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS               AEKAPYIAKADKRKV
Subjt:  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRKV

Query:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEE
        EYEKNMKAYNKKQASGANAA+EDESEKSMSEVNDDEDGDEGSEE
Subjt:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEE

A0A5A7VCD7 HMG1/2-like protein9.4e-4277.78Show/hide
Query:  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRKV
        MKGGKS         KL+VKKGA  AG    KKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS               AEKAPYIAKADKRKV
Subjt:  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRKV

Query:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEE
        EYEKNMKAYNKKQASGANAA+EDESEKSMSEVNDDEDGDEGSEE
Subjt:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEE

A0A6J1CNM1 HMG1/2-like protein8.2e-5489.58Show/hide
Query:  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRKV
        MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS               AEKAPYIAKADKRKV
Subjt:  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRKV

Query:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEE
        EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEE
Subjt:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEE

A0A6J1FF34 HMG1/2-like protein1.7e-4680.56Show/hide
Query:  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRKV
        MKGGKSKSESKKAD KL+VKKGAA AG    KKA KDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS               A+KAPY+AKADKRKV
Subjt:  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRKV

Query:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEE
        EYEK MKAYNKKQASGANAAEEDESEKS+SEVNDDE+GDEGSEE
Subjt:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEE

A0A6J1IF57 HMG1/2-like protein1.7e-4680.56Show/hide
Query:  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRKV
        MKGGKSKSESKKAD KL+VKKGAA AG    KKA KDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS               A+KAPY+AKADKRKV
Subjt:  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRKV

Query:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEE
        EYEK MKAYNKKQASGANAAEEDESEKS+SEVNDDE+GDEGSEE
Subjt:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEE

SwissProt top hitse value%identityAlignment
O49596 High mobility group B protein 23.6e-3059.72Show/hide
Query:  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRKV
        MKG KSK+E++   +KLSV K  AK GA RGK A KDPNKPKRPASAFFVFME+FR+ F +ENP NK+V+               +EKAPY+AKA+KRKV
Subjt:  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRKV

Query:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEE
        EYEKN+KAYNKK   G    E++ES+KS+SEVND++D ++GSEE
Subjt:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEE

P26585 HMG1/2-like protein9.7e-3666.67Show/hide
Query:  MKGGKSKSESKKADAKLSV-KKGAA-KAGATRGK-KAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADK
        MKGGKSK+ESK+AD KL+V KKGAA KA    GK KA KDPNKPKRP SAFFVFMEEFRK FN+E+P NKAVS               AEKAPY+AK++K
Subjt:  MKGGKSKSESKKADAKLSV-KKGAA-KAGATRGK-KAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADK

Query:  RKVEYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEE
        RKVEYEKNM+AYNKKQA G    +E+ESEKS+SEVND++D +EGS E
Subjt:  RKVEYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEE

P27347 DNA-binding protein MNB1B4.5e-2555.56Show/hide
Query:  MKGGKSKSESKKADAKLSVK-KGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVSA---------------EKAPYIAKADKRK
        MKG KSK  + KADAKL+VK KGA K    R  KAGKDPNKPKR  SAFFVFMEEFRK+F E+NP NK+V+A               +KAPY+AKA+K K
Subjt:  MKGGKSKSESKKADAKLSVK-KGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVSA---------------EKAPYIAKADKRK

Query:  VEYEKNMKAYNKKQASGANAA--------EEDESEKSMSEVNDDEDGDEGSEE
        +EY K + AYNK +++ A  A        +E+ES+KS SEVN DED +EGSEE
Subjt:  VEYEKNMKAYNKKQASGANAA--------EEDESEKSMSEVNDDEDGDEGSEE

P40619 HMG1/2-like protein2.3e-2960.42Show/hide
Query:  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAV---------------SAEKAPYIAKADKRKV
        MKGGKSK+   K+D KL+VKK AA    T  KKA KDPNKPKRP SAFFVFME+FRK + E++PNNK+V               +AEKAP+I+KA+KRK 
Subjt:  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAV---------------SAEKAPYIAKADKRKV

Query:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEE
        EYEKN++AYNKKQA+G  AAEE+ES+KS SEVNDD++  +GS E
Subjt:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEE

P93047 High mobility group B protein 31.3e-2757.64Show/hide
Query:  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVSA---------------EKAPYIAKADKRKV
        MKG KSK+E++    KLSV K  AK      K A KDPNKPKRP+SAFFVFME+FR  + EE+P NK+V+A               EKAPY+AKADKRKV
Subjt:  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVSA---------------EKAPYIAKADKRKV

Query:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEE
        EYEKNMKAYNKK   G    E++ES+KS+SEVND++D ++GSEE
Subjt:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEE

Arabidopsis top hitse value%identityAlignment
AT1G20693.1 high mobility group B22.5e-3159.72Show/hide
Query:  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRKV
        MKG KSK+E++   +KLSV K  AK GA RGK A KDPNKPKRPASAFFVFME+FR+ F +ENP NK+V+               +EKAPY+AKA+KRKV
Subjt:  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRKV

Query:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEE
        EYEKN+KAYNKK   G    E++ES+KS+SEVND++D ++GSEE
Subjt:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEE

AT1G20693.2 high mobility group B22.5e-3159.72Show/hide
Query:  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRKV
        MKG KSK+E++   +KLSV K  AK GA RGK A KDPNKPKRPASAFFVFME+FR+ F +ENP NK+V+               +EKAPY+AKA+KRKV
Subjt:  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRKV

Query:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEE
        EYEKN+KAYNKK   G    E++ES+KS+SEVND++D ++GSEE
Subjt:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEE

AT1G20693.3 high mobility group B22.5e-3159.72Show/hide
Query:  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRKV
        MKG KSK+E++   +KLSV K  AK GA RGK A KDPNKPKRPASAFFVFME+FR+ F +ENP NK+V+               +EKAPY+AKA+KRKV
Subjt:  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRKV

Query:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEE
        EYEKN+KAYNKK   G    E++ES+KS+SEVND++D ++GSEE
Subjt:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEE

AT1G20696.1 high mobility group B39.0e-2957.64Show/hide
Query:  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVSA---------------EKAPYIAKADKRKV
        MKG KSK+E++    KLSV K  AK      K A KDPNKPKRP+SAFFVFME+FR  + EE+P NK+V+A               EKAPY+AKADKRKV
Subjt:  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVSA---------------EKAPYIAKADKRKV

Query:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEE
        EYEKNMKAYNKK   G    E++ES+KS+SEVND++D ++GSEE
Subjt:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEE

AT1G20696.3 high mobility group B32.4e-2957.93Show/hide
Query:  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVSA---------------EKAPYIAKADKRKV
        MKG KSK+E++    KLSV K  AK      K A KDPNKPKRP+SAFFVFME+FR  + EE+P NK+V+A               EKAPY+AKADKRKV
Subjt:  MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVSA---------------EKAPYIAKADKRKV

Query:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEEV
        EYEKNMKAYNKK   G    E++ES+KS+SEVND++D ++GSEEV
Subjt:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEEV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGGTGGAAAATCGAAGTCCGAGTCGAAGAAAGCAGACGCGAAGCTTTCTGTGAAGAAAGGTGCAGCCAAAGCGGGCGCAACACGGGGTAAGAAGGCAGGGAAGGA
TCCTAACAAACCTAAGCGGCCGGCCAGTGCCTTCTTCGTTTTTATGGAGGAGTTCAGGAAGAAGTTTAATGAAGAGAATCCGAATAACAAAGCAGTATCCGCTGAAAAAG
CACCTTACATTGCTAAGGCTGACAAGAGGAAGGTTGAATATGAGAAAAATATGAAGGCCTATAACAAGAAACAGGCCAGTGGAGCCAATGCTGCTGAAGAAGATGAATCT
GAGAAGTCCATGTCTGAGGTGAATGATGATGAGGATGGAGACGAGGGCAGCGAAGAGGTTAGTGGGTTGAAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAGGTGGAAAATCGAAGTCCGAGTCGAAGAAAGCAGACGCGAAGCTTTCTGTGAAGAAAGGTGCAGCCAAAGCGGGCGCAACACGGGGTAAGAAGGCAGGGAAGGA
TCCTAACAAACCTAAGCGGCCGGCCAGTGCCTTCTTCGTTTTTATGGAGGAGTTCAGGAAGAAGTTTAATGAAGAGAATCCGAATAACAAAGCAGTATCCGCTGAAAAAG
CACCTTACATTGCTAAGGCTGACAAGAGGAAGGTTGAATATGAGAAAAATATGAAGGCCTATAACAAGAAACAGGCCAGTGGAGCCAATGCTGCTGAAGAAGATGAATCT
GAGAAGTCCATGTCTGAGGTGAATGATGATGAGGATGGAGACGAGGGCAGCGAAGAGGTTAGTGGGTTGAAG
Protein sequenceShow/hide protein sequence
MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVSAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAAEEDES
EKSMSEVNDDEDGDEGSEEVSGLK