CuGenDBv2

Gene ID	MS021839
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	TFIIS N-terminal domain-containing protein
Genome location	scaffold1:715177..715347
RNA-Seq Expression	MS021839
Synteny	MS021839
Gene Ontology terms	GO:0005634 - nucleus (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6591263.1 hypothetical protein SDJN03_13609, partial [Cucurbita argyrosperma subsp. sororia]

1.6e-21

98.25

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Query:  LQFEGTLGWRGSAATSAFRPASPRKVPDSDRTLSSGGNSDSSKQRQDFLDIDLNVAE
        LQFEG LGWRGSAATSAFRPASPRKVPDSDRTLSSGGNSDSSKQRQDFLDIDLNVAE
Subjt:  LQFEGTLGWRGSAATSAFRPASPRKVPDSDRTLSSGGNSDSSKQRQDFLDIDLNVAE

KAG7024145.1 hypothetical protein SDJN02_12958, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.6e-21

98.25

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Query:  LQFEGTLGWRGSAATSAFRPASPRKVPDSDRTLSSGGNSDSSKQRQDFLDIDLNVAE
        LQFEG LGWRGSAATSAFRPASPRKVPDSDRTLSSGGNSDSSKQRQDFLDIDLNVAE
Subjt:  LQFEGTLGWRGSAATSAFRPASPRKVPDSDRTLSSGGNSDSSKQRQDFLDIDLNVAE

XP_022134007.1 uncharacterized protein LOC111006388 [Momordica charantia]

4.3e-22

100

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Query:  LQFEGTLGWRGSAATSAFRPASPRKVPDSDRTLSSGGNSDSSKQRQDFLDIDLNVAE
        LQFEGTLGWRGSAATSAFRPASPRKVPDSDRTLSSGGNSDSSKQRQDFLDIDLNVAE
Subjt:  LQFEGTLGWRGSAATSAFRPASPRKVPDSDRTLSSGGNSDSSKQRQDFLDIDLNVAE

XP_022937099.1 uncharacterized protein LOC111443504 [Cucurbita moschata]

1.6e-21

98.25

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Query:  LQFEGTLGWRGSAATSAFRPASPRKVPDSDRTLSSGGNSDSSKQRQDFLDIDLNVAE
        LQFEG LGWRGSAATSAFRPASPRKVPDSDRTLSSGGNSDSSKQRQDFLDIDLNVAE
Subjt:  LQFEGTLGWRGSAATSAFRPASPRKVPDSDRTLSSGGNSDSSKQRQDFLDIDLNVAE

XP_038899939.1 uncharacterized protein LOC120087121 [Benincasa hispida]

1.6e-21

98.25

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Query:  LQFEGTLGWRGSAATSAFRPASPRKVPDSDRTLSSGGNSDSSKQRQDFLDIDLNVAE
        LQFEG LGWRGSAATSAFRPASPRKVPDSDRTLSSGGNSDSSKQRQDFLDIDLNVAE
Subjt:  LQFEGTLGWRGSAATSAFRPASPRKVPDSDRTLSSGGNSDSSKQRQDFLDIDLNVAE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7V5D2 TFIIS N-terminal domain-containing protein

2.3e-21

96.49

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Query:  LQFEGTLGWRGSAATSAFRPASPRKVPDSDRTLSSGGNSDSSKQRQDFLDIDLNVAE
        LQFEG LGWRGSAATSAFRPASPRKVPDSDRT SSGGNSDSSKQRQDFLDIDLNVAE
Subjt:  LQFEGTLGWRGSAATSAFRPASPRKVPDSDRTLSSGGNSDSSKQRQDFLDIDLNVAE

A0A5D3E6E1 TFIIS N-terminal domain-containing protein

2.3e-21

96.49

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Query:  LQFEGTLGWRGSAATSAFRPASPRKVPDSDRTLSSGGNSDSSKQRQDFLDIDLNVAE
        LQFEG LGWRGSAATSAFRPASPRKVPDSDRT SSGGNSDSSKQRQDFLDIDLNVAE
Subjt:  LQFEGTLGWRGSAATSAFRPASPRKVPDSDRTLSSGGNSDSSKQRQDFLDIDLNVAE

A0A6J1BYC5 uncharacterized protein LOC111006388

2.1e-22

100

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Query:  LQFEGTLGWRGSAATSAFRPASPRKVPDSDRTLSSGGNSDSSKQRQDFLDIDLNVAE
        LQFEGTLGWRGSAATSAFRPASPRKVPDSDRTLSSGGNSDSSKQRQDFLDIDLNVAE
Subjt:  LQFEGTLGWRGSAATSAFRPASPRKVPDSDRTLSSGGNSDSSKQRQDFLDIDLNVAE

A0A6J1FA72 uncharacterized protein LOC111443504

7.8e-22

98.25

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Query:  LQFEGTLGWRGSAATSAFRPASPRKVPDSDRTLSSGGNSDSSKQRQDFLDIDLNVAE
        LQFEG LGWRGSAATSAFRPASPRKVPDSDRTLSSGGNSDSSKQRQDFLDIDLNVAE
Subjt:  LQFEGTLGWRGSAATSAFRPASPRKVPDSDRTLSSGGNSDSSKQRQDFLDIDLNVAE

A0A6J1IDQ7 uncharacterized protein LOC111475590

1.0e-21

96.49

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Query:  LQFEGTLGWRGSAATSAFRPASPRKVPDSDRTLSSGGNSDSSKQRQDFLDIDLNVAE
        LQFEG LGWRGSAATSAFRPASPRK+PDSDRTLSSGGNSDSSKQRQDFLDIDLNVAE
Subjt:  LQFEGTLGWRGSAATSAFRPASPRKVPDSDRTLSSGGNSDSSKQRQDFLDIDLNVAE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G48050.1 BAH domain ;TFIIS helical bundle-like domain

2.6e-09

52.46

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Query:  LQFEGTLGWRGSAATSAFRPASPRKVPDSDRTLSSGGNSDSS----KQRQDFLDIDLNVAE
        L+ +G +GWRGSAATSAFRPA PRK  D   ++++   SD+S    KQ + FLD DLNV +
Subjt:  LQFEGTLGWRGSAATSAFRPASPRKVPDSDRTLSSGGNSDSS----KQRQDFLDIDLNVAE

AT3G48050.2 BAH domain ;TFIIS helical bundle-like domain

2.6e-09

52.46

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Query:  LQFEGTLGWRGSAATSAFRPASPRKVPDSDRTLSSGGNSDSS----KQRQDFLDIDLNVAE
        L+ +G +GWRGSAATSAFRPA PRK  D   ++++   SD+S    KQ + FLD DLNV +
Subjt:  LQFEGTLGWRGSAATSAFRPASPRKVPDSDRTLSSGGNSDSS----KQRQDFLDIDLNVAE

AT3G48060.1 BAH domain ;TFIIS helical bundle-like domain

3.0e-10

52.46

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Query:  LQFEGTLGWRGSAATSAFRPASPRKVPDSDRTLSSGGNSDSS----KQRQDFLDIDLNVAE
        L+++G +GWRGSAATSAFRPA PRK  D   ++++   SD+S    KQ + FLD DLNV +
Subjt:  LQFEGTLGWRGSAATSAFRPASPRKVPDSDRTLSSGGNSDSS----KQRQDFLDIDLNVAE

Sequences

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CDS sequence

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TTGCAGTTTGAAGGGACCCTTGGATGGAGAGGCTCTGCAGCCACCAGTGCTTTCCGCCCTGCTTCCCCACGTAAAGTTCCTGATAGTGATAGGACTCTTTCTAGTGGTGG
AAATTCTGATAGTTCGAAGCAGAGGCAGGACTTTCTTGACATTGATCTGAATGTGGCTGAG

mRNA sequence

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TTGCAGTTTGAAGGGACCCTTGGATGGAGAGGCTCTGCAGCCACCAGTGCTTTCCGCCCTGCTTCCCCACGTAAAGTTCCTGATAGTGATAGGACTCTTTCTAGTGGTGG
AAATTCTGATAGTTCGAAGCAGAGGCAGGACTTTCTTGACATTGATCTGAATGTGGCTGAG

Protein sequence

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LQFEGTLGWRGSAATSAFRPASPRKVPDSDRTLSSGGNSDSSKQRQDFLDIDLNVAE

MS021839 (gene) of Bitter gourd (TR) v1 genome