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MS021845 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS021845
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTransmembrane protein
Genome locationscaffold1:759348..759722
RNA-Seq ExpressionMS021845
SyntenyMS021845
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063287.1 hypothetical protein E6C27_scaffold205G001100 [Cucumis melo var. makuwa]3.1e-4173.81Show/hide
Query:  MSWMVGERGPEWKYGWAERTMTSLSLPPMPLLAFFGVVVLLLSLQT-KTVFDFKLFLFAVILLLIFVVNSMAVYGTVVGPASVRTTTRSVREAEKASPWG
        MSW+V ERGPEWKYGW ER M S+SLPPMPLLAF GVVVLLLSLQ+ + V DFKL L A+  L+IF  NS+AV GT VG A++RT +RS +EAE+ SPWG
Subjt:  MSWMVGERGPEWKYGWAERTMTSLSLPPMPLLAFFGVVVLLLSLQT-KTVFDFKLFLFAVILLLIFVVNSMAVYGTVVGPASVRTTTRSVREAEKASPWG

Query:  VAVLLFLLLILLWNRPYFRSKWSPPS
         AVLLFLLLILLWNRPYFRSKWSPPS
Subjt:  VAVLLFLLLILLWNRPYFRSKWSPPS

KAG6608597.1 hypothetical protein SDJN03_01939, partial [Cucurbita argyrosperma subsp. sororia]4.9e-3169.57Show/hide
Query:  MSWMVGERGPEWKYGWAERTMTSLSLPPMPLLAFFGVVVLLLSLQTKTV-FDFKLFLFAVILLLIFVVNSMAVYGTVVGPASVRTTTRSVREAEKASPWG
        MSW   ER  EWKYGWAERTM S+SLPPMPLLAF GVV+LLLSLQ++ + FDFKLFL A+  LLIF+ NS+ V G+V   A +RT  RS +EAEK SPWG
Subjt:  MSWMVGERGPEWKYGWAERTMTSLSLPPMPLLAFFGVVVLLLSLQTKTV-FDFKLFLFAVILLLIFVVNSMAVYGTVVGPASVRTTTRSVREAEKASPWG

Query:  VAVLLFLLLILLWNR
         AVLLFLLLILLWNR
Subjt:  VAVLLFLLLILLWNR

KAG7037914.1 hypothetical protein SDJN02_01545, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-3068.7Show/hide
Query:  MSWMVGERGPEWKYGWAERTMTSLSLPPMPLLAFFGVVVLLLSLQTKTV-FDFKLFLFAVILLLIFVVNSMAVYGTVVGPASVRTTTRSVREAEKASPWG
        MSW   ER PEWKYGWAERT+ S+S PPMPLLAF GVV+LLLSLQ++ + FDFKLFL A+  LLIF+ NS+ V G+V   A +RT  RS +EAEK SPWG
Subjt:  MSWMVGERGPEWKYGWAERTMTSLSLPPMPLLAFFGVVVLLLSLQTKTV-FDFKLFLFAVILLLIFVVNSMAVYGTVVGPASVRTTTRSVREAEKASPWG

Query:  VAVLLFLLLILLWNR
         AVLLFLLLILLWNR
Subjt:  VAVLLFLLLILLWNR

KGN60038.1 hypothetical protein Csa_001668 [Cucumis sativus]2.8e-4275.4Show/hide
Query:  MSWMVGERGPEWKYGWAERTMTSLSLPPMPLLAFFGVVVLLLSLQT-KTVFDFKLFLFAVILLLIFVVNSMAVYGTVVGPASVRTTTRSVREAEKASPWG
        MSW+V ERGPEWKYGW ER M+S+SLPPMPLLAF GVVVLLLSLQ+ + V DFKL L A+  L+IFV NS+AV GT VG AS+RT +RS +EAE+ SPWG
Subjt:  MSWMVGERGPEWKYGWAERTMTSLSLPPMPLLAFFGVVVLLLSLQT-KTVFDFKLFLFAVILLLIFVVNSMAVYGTVVGPASVRTTTRSVREAEKASPWG

Query:  VAVLLFLLLILLWNRPYFRSKWSPPS
         AVLLFLLLILLWNRPYFRSKWSPPS
Subjt:  VAVLLFLLLILLWNRPYFRSKWSPPS

TYK31488.1 hypothetical protein E5676_scaffold455G008040 [Cucumis melo var. makuwa]9.0e-4173.02Show/hide
Query:  MSWMVGERGPEWKYGWAERTMTSLSLPPMPLLAFFGVVVLLLSLQT-KTVFDFKLFLFAVILLLIFVVNSMAVYGTVVGPASVRTTTRSVREAEKASPWG
        MSW+V ERGPEWKYGW ER M S+SLPPMPLLAF GVVVLLLSLQ+ + V DFKL L A+   +IF  NS+AV GT VG A++RT +RS +EAE+ SPWG
Subjt:  MSWMVGERGPEWKYGWAERTMTSLSLPPMPLLAFFGVVVLLLSLQT-KTVFDFKLFLFAVILLLIFVVNSMAVYGTVVGPASVRTTTRSVREAEKASPWG

Query:  VAVLLFLLLILLWNRPYFRSKWSPPS
         AVLLFLLLILLWNRPYFRSKWSPPS
Subjt:  VAVLLFLLLILLWNRPYFRSKWSPPS

TrEMBL top hitse value%identityAlignment
A0A0A0LE80 Uncharacterized protein1.3e-4275.4Show/hide
Query:  MSWMVGERGPEWKYGWAERTMTSLSLPPMPLLAFFGVVVLLLSLQT-KTVFDFKLFLFAVILLLIFVVNSMAVYGTVVGPASVRTTTRSVREAEKASPWG
        MSW+V ERGPEWKYGW ER M+S+SLPPMPLLAF GVVVLLLSLQ+ + V DFKL L A+  L+IFV NS+AV GT VG AS+RT +RS +EAE+ SPWG
Subjt:  MSWMVGERGPEWKYGWAERTMTSLSLPPMPLLAFFGVVVLLLSLQT-KTVFDFKLFLFAVILLLIFVVNSMAVYGTVVGPASVRTTTRSVREAEKASPWG

Query:  VAVLLFLLLILLWNRPYFRSKWSPPS
         AVLLFLLLILLWNRPYFRSKWSPPS
Subjt:  VAVLLFLLLILLWNRPYFRSKWSPPS

A0A5A7V8G0 Uncharacterized protein1.5e-4173.81Show/hide
Query:  MSWMVGERGPEWKYGWAERTMTSLSLPPMPLLAFFGVVVLLLSLQT-KTVFDFKLFLFAVILLLIFVVNSMAVYGTVVGPASVRTTTRSVREAEKASPWG
        MSW+V ERGPEWKYGW ER M S+SLPPMPLLAF GVVVLLLSLQ+ + V DFKL L A+  L+IF  NS+AV GT VG A++RT +RS +EAE+ SPWG
Subjt:  MSWMVGERGPEWKYGWAERTMTSLSLPPMPLLAFFGVVVLLLSLQT-KTVFDFKLFLFAVILLLIFVVNSMAVYGTVVGPASVRTTTRSVREAEKASPWG

Query:  VAVLLFLLLILLWNRPYFRSKWSPPS
         AVLLFLLLILLWNRPYFRSKWSPPS
Subjt:  VAVLLFLLLILLWNRPYFRSKWSPPS

A0A5A7VAG3 Uncharacterized protein4.7e-1943.7Show/hide
Query:  MSWMVGE-RGPEWKYGWAERTMTSLSLPPMPLLAFFGVVVLLLSLQT---------KTVFDFKLFLFAVILLLIFVVNSMAVYG--TVVGPASVRTTTRS
        M W++ E RGP WK GWAE+ ++S++ PP PLLA  G++V+LLS+ +         KT  +FKLF   + L+ +FV NS+  YG   ++ P +       
Subjt:  MSWMVGE-RGPEWKYGWAERTMTSLSLPPMPLLAFFGVVVLLLSLQT---------KTVFDFKLFLFAVILLLIFVVNSMAVYG--TVVGPASVRTTTRS

Query:  VREAEKASPWGVAVLLFLLLILLWNRPYFRSKWSP
           A  ASPWG AVLL +LL+LL  +PYF SKW P
Subjt:  VREAEKASPWGVAVLLFLLLILLWNRPYFRSKWSP

A0A5D3E6P1 Uncharacterized protein4.3e-4173.02Show/hide
Query:  MSWMVGERGPEWKYGWAERTMTSLSLPPMPLLAFFGVVVLLLSLQT-KTVFDFKLFLFAVILLLIFVVNSMAVYGTVVGPASVRTTTRSVREAEKASPWG
        MSW+V ERGPEWKYGW ER M S+SLPPMPLLAF GVVVLLLSLQ+ + V DFKL L A+   +IF  NS+AV GT VG A++RT +RS +EAE+ SPWG
Subjt:  MSWMVGERGPEWKYGWAERTMTSLSLPPMPLLAFFGVVVLLLSLQT-KTVFDFKLFLFAVILLLIFVVNSMAVYGTVVGPASVRTTTRSVREAEKASPWG

Query:  VAVLLFLLLILLWNRPYFRSKWSPPS
         AVLLFLLLILLWNRPYFRSKWSPPS
Subjt:  VAVLLFLLLILLWNRPYFRSKWSPPS

A0A6J1FL09 uncharacterized protein LOC1114462112.6e-3067.83Show/hide
Query:  MSWMVGERGPEWKYGWAERTMTSLSLPPMPLLAFFGVVVLLLSLQTKTV-FDFKLFLFAVILLLIFVVNSMAVYGTVVGPASVRTTTRSVREAEKASPWG
        MSW   ER PEWKYGWAERT+ S+S PPMPLLAF GVV+LLLSLQ++ +  DFKLFL A+  LLIF+ NS+ V G+V   A +RT  RS +EAEK SPWG
Subjt:  MSWMVGERGPEWKYGWAERTMTSLSLPPMPLLAFFGVVVLLLSLQTKTV-FDFKLFLFAVILLLIFVVNSMAVYGTVVGPASVRTTTRSVREAEKASPWG

Query:  VAVLLFLLLILLWNR
         AVLLFLLLILLWNR
Subjt:  VAVLLFLLLILLWNR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G42146.1 unknown protein1.7e-1335.56Show/hide
Query:  MSWMVGE-RGPEWKYGWAERTMTSLSLPPMPLLAFFGVVVLLLSLQT---------KTVFDFKLFLFAVILLLIFVVNSMAVYGTVV--GPASVRTTTRS
        M W + E RG  WK GW E T+ + S PP+ LLA   ++ LLL L +         KT  + KLF+  + +L +FV+ S++    ++     SVR     
Subjt:  MSWMVGE-RGPEWKYGWAERTMTSLSLPPMPLLAFFGVVVLLLSLQT---------KTVFDFKLFLFAVILLLIFVVNSMAVYGTVV--GPASVRTTTRS

Query:  VREAEKASPWGVAVLLFLLLILLWNRPYFRSKWSP
            E   PWGV ++L LLL+L+  + YF S W P
Subjt:  VREAEKASPWGVAVLLFLLLILLWNRPYFRSKWSP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTGGATGGTGGGGGAAAGAGGTCCAGAGTGGAAGTATGGATGGGCAGAGAGAACGATGACCTCCTTGTCTCTCCCGCCGATGCCGCTGCTCGCCTTTTTCGGTGT
CGTCGTCCTTCTGCTGTCGTTGCAGACGAAAACCGTGTTCGACTTCAAGTTGTTCCTTTTTGCTGTGATATTATTGCTGATCTTTGTTGTAAATTCCATGGCCGTGTATG
GTACGGTTGTTGGGCCTGCTTCAGTGAGAACTACGACCAGGTCGGTTCGGGAGGCCGAAAAGGCCTCGCCTTGGGGCGTGGCGGTGTTGCTGTTTCTGCTGCTGATATTG
CTATGGAACCGCCCTTACTTCCGCTCCAAGTGGTCGCCTCCATCT
mRNA sequenceShow/hide mRNA sequence
ATGAGTTGGATGGTGGGGGAAAGAGGTCCAGAGTGGAAGTATGGATGGGCAGAGAGAACGATGACCTCCTTGTCTCTCCCGCCGATGCCGCTGCTCGCCTTTTTCGGTGT
CGTCGTCCTTCTGCTGTCGTTGCAGACGAAAACCGTGTTCGACTTCAAGTTGTTCCTTTTTGCTGTGATATTATTGCTGATCTTTGTTGTAAATTCCATGGCCGTGTATG
GTACGGTTGTTGGGCCTGCTTCAGTGAGAACTACGACCAGGTCGGTTCGGGAGGCCGAAAAGGCCTCGCCTTGGGGCGTGGCGGTGTTGCTGTTTCTGCTGCTGATATTG
CTATGGAACCGCCCTTACTTCCGCTCCAAGTGGTCGCCTCCATCT
Protein sequenceShow/hide protein sequence
MSWMVGERGPEWKYGWAERTMTSLSLPPMPLLAFFGVVVLLLSLQTKTVFDFKLFLFAVILLLIFVVNSMAVYGTVVGPASVRTTTRSVREAEKASPWGVAVLLFLLLIL
LWNRPYFRSKWSPPS