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MS021850 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS021850
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionAP complex subunit sigma
Genome locationscaffold1:770996..771937
RNA-Seq ExpressionMS021850
SyntenyMS021850
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0072583 - clathrin-dependent endocytosis (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0030122 - AP-2 adaptor complex (cellular component)
GO:0004518 - nuclease activity (molecular function)
GO:0035615 - clathrin adaptor activity (molecular function)
InterPro domainsIPR011012 - Longin-like domain superfamily
IPR016635 - Adaptor protein complex, sigma subunit
IPR022775 - AP complex, mu/sigma subunit


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF9853533.1 hypothetical protein H0E87_005497 [Populus deltoides]7.4e-5598.18Show/hide
Query:  IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCEL
        IRFILLQNRQGKTRLAKYYVPLE+SEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFF+LCVDITDNELAYLECIHLFVEILDHFFSNVCEL
Subjt:  IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCEL

Query:  DLVFNFHKVC
        DLVFNFHKVC
Subjt:  DLVFNFHKVC

KDO84851.1 hypothetical protein CISIN_1g032349mg [Citrus sinensis]3.3e-5599.09Show/hide
Query:  IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCEL
        IRFILLQNRQGKTRLAKYYVPLE+SEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCEL
Subjt:  IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCEL

Query:  DLVFNFHKVC
        DLVFNFHKVC
Subjt:  DLVFNFHKVC

KZN01168.1 hypothetical protein DCAR_009922 [Daucus carota subsp. sativus]4.4e-55100Show/hide
Query:  QIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE
        QIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE
Subjt:  QIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE

Query:  LDLVFNFHKV
        LDLVFNFHKV
Subjt:  LDLVFNFHKV

OAY50587.1 hypothetical protein MANES_05G147900v8 [Manihot esculenta]3.3e-5599.09Show/hide
Query:  IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCEL
        IRFILLQNRQGKTRLAKYYVPLE+SEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCEL
Subjt:  IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCEL

Query:  DLVFNFHKVC
        DLVFNFHKVC
Subjt:  DLVFNFHKVC

XP_015900335.1 AP-2 complex subunit sigma isoform X1 [Ziziphus jujuba]9.7e-5599.09Show/hide
Query:  QIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE
        QIRFILLQNRQGKTRLAKYYVPLE+SEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE
Subjt:  QIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE

Query:  LDLVFNFHKV
        LDLVFNFHKV
Subjt:  LDLVFNFHKV

TrEMBL top hitse value%identityAlignment
A0A067HB09 AP complex subunit sigma1.6e-5599.09Show/hide
Query:  IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCEL
        IRFILLQNRQGKTRLAKYYVPLE+SEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCEL
Subjt:  IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCEL

Query:  DLVFNFHKVC
        DLVFNFHKVC
Subjt:  DLVFNFHKVC

A0A166AFE0 Clat_adaptor_s domain-containing protein2.1e-55100Show/hide
Query:  QIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE
        QIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE
Subjt:  QIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE

Query:  LDLVFNFHKV
        LDLVFNFHKV
Subjt:  LDLVFNFHKV

A0A2C9VWA3 AP complex subunit sigma1.6e-5599.09Show/hide
Query:  IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCEL
        IRFILLQNRQGKTRLAKYYVPLE+SEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCEL
Subjt:  IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCEL

Query:  DLVFNFHKVC
        DLVFNFHKVC
Subjt:  DLVFNFHKVC

A0A2P2MI94 AP complex subunit sigma4.7e-5597.27Show/hide
Query:  IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCEL
        IRFI+LQNRQGKTRLAKYYVPLE+SEKHKVEYEVHRLVVNRDPKFTNFVEFRTHK+IYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCEL
Subjt:  IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCEL

Query:  DLVFNFHKVC
        DLVFNFHKVC
Subjt:  DLVFNFHKVC

K7MP16 AP complex subunit sigma4.7e-5597.27Show/hide
Query:  IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCEL
        IRFILLQNRQGKTRLAKYYVPLE+SEKHKVEYEVHRLVVNRDPK+TNFVEFRTHK+IYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCEL
Subjt:  IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCEL

Query:  DLVFNFHKVC
        DLVFNFHKVC
Subjt:  DLVFNFHKVC

SwissProt top hitse value%identityAlignment
O50016 AP-2 complex subunit sigma8.2e-5798.17Show/hide
Query:  IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCEL
        IRFILLQNRQGKTRLAKYYVPLE+SEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFS+CVDITDNELAYLECIHLFVEILDHFFSNVCEL
Subjt:  IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCEL

Query:  DLVFNFHKV
        DLVFNFHKV
Subjt:  DLVFNFHKV

Q4WS49 AP-2 complex subunit sigma7.2e-3770.27Show/hide
Query:  IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKF-TNFVEF-RTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVC
        + FIL+QNRQGKTRLAK+Y P  + EK K++ EVHRLV  RD K+ +NFVEF R+ K++YRRYAGLFF +CVD TDNELAYLE IH FVE+LD FF NVC
Subjt:  IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKF-TNFVEF-RTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVC

Query:  ELDLVFNFHKV
        ELDLVFNF+KV
Subjt:  ELDLVFNFHKV

Q54H39 AP-2 complex subunit sigma2.4e-4070.64Show/hide
Query:  IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCEL
        I FIL+QNRQGKTRL+K+Y P E+ EK K+ +E+H++V +R+ KFTNFVEFRTH+++YRRYAGLFFS+CVD TDNEL  LE IHLFVE+LD +F NVCEL
Subjt:  IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCEL

Query:  DLVFNFHKV
        DLVFNF+KV
Subjt:  DLVFNFHKV

Q7SAQ1 AP-2 complex subunit sigma5.9e-3971.82Show/hide
Query:  IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKF-TNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE
        + FIL+QNRQGKTRLAK+YVP  + EK K++ E+HRLV  RD K+ +NFVEFR HKV+YRRYAGLFF  CVD  DNELAYLE IH FVE+LD FF NVCE
Subjt:  IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKF-TNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE

Query:  LDLVFNFHKV
        LDLVFNF+KV
Subjt:  LDLVFNFHKV

Q84WL9 AP-2 complex subunit sigma5.9e-5597.25Show/hide
Query:  IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCEL
        IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRD KFTNFVEFRTHKVIYRRYAGLFFS+CVDITDNELAYLE IHLFVEILDHFFSNVCEL
Subjt:  IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCEL

Query:  DLVFNFHKV
        DLVFNFHKV
Subjt:  DLVFNFHKV

Arabidopsis top hitse value%identityAlignment
AT1G47830.1 SNARE-like superfamily protein4.2e-5697.25Show/hide
Query:  IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCEL
        IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRD KFTNFVEFRTHKVIYRRYAGLFFS+CVDITDNELAYLE IHLFVEILDHFFSNVCEL
Subjt:  IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCEL

Query:  DLVFNFHKV
        DLVFNFHKV
Subjt:  DLVFNFHKV

AT2G17380.1 associated protein 191.0e-3055.56Show/hide
Query:  IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCEL
        I F+LL +RQGK RL K+Y P  + E+ KV  E+  +++NR PK  NF+E+R +KV+Y+RYA L+F +C+D  DNEL  LE IH +VEILD +F +VCEL
Subjt:  IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCEL

Query:  DLVFNFHK
        DL+FNFHK
Subjt:  DLVFNFHK

AT2G19790.1 SNARE-like superfamily protein7.2e-2451.85Show/hide
Query:  IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCEL
        IRFIL+ N+QG+TRLA+YY  L   E+  +E E+ R  + R+ +  +FVE R +K++YRRYA LFF + VD  +NELA LE IHL VE +D  F NVCEL
Subjt:  IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCEL

Query:  DLVFNFHK
        D++F+  K
Subjt:  DLVFNFHK

AT4G35410.1 Clathrin adaptor complex small chain family protein3.6e-3156.88Show/hide
Query:  IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCEL
        I F+LL +RQGK RL K+Y P  + E+ KV  E+  +++NR PK  NFVE+R +KV+Y+RYA L+F +C+D  DNEL  LE IH +VEILD +F +VCEL
Subjt:  IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCEL

Query:  DLVFNFHKV
        DL+FNFHKV
Subjt:  DLVFNFHKV

AT4G35410.2 Clathrin adaptor complex small chain family protein1.0e-3056.48Show/hide
Query:  IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCEL
        I F+LL +RQGK RL K+Y P  + E+ KV  E+  +++NR PK  NFVE+R +KV+Y+RYA L+F +C+D  DNEL  LE IH +VEILD +F +VCEL
Subjt:  IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCEL

Query:  DLVFNFHK
        DL+FNFHK
Subjt:  DLVFNFHK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CAGATCCGGTTCATACTTTTGCAAAACAGGCAGGGCAAGACTCGTCTGGCTAAGTACTATGTTCCTCTTGAGGAATCCGAGAAGCACAAGGTCGAATACGAGGTTCACCG
ATTGGTGGTGAATAGAGATCCCAAGTTCACAAATTTCGTTGAGTTCCGAACACATAAGGTAATCTACAGACGATATGCCGGGTTATTTTTCTCTCTTTGTGTGGACATAA
CCGACAATGAGTTGGCATATCTCGAGTGTATTCATTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTTTGTGAGCTCGATTTGGTTTTTAACTTTCACAAGGTT
TGT
mRNA sequenceShow/hide mRNA sequence
CAGATCCGGTTCATACTTTTGCAAAACAGGCAGGGCAAGACTCGTCTGGCTAAGTACTATGTTCCTCTTGAGGAATCCGAGAAGCACAAGGTCGAATACGAGGTTCACCG
ATTGGTGGTGAATAGAGATCCCAAGTTCACAAATTTCGTTGAGTTCCGAACACATAAGGTAATCTACAGACGATATGCCGGGTTATTTTTCTCTCTTTGTGTGGACATAA
CCGACAATGAGTTGGCATATCTCGAGTGTATTCATTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTTTGTGAGCTCGATTTGGTTTTTAACTTTCACAAGGTT
TGT
Protein sequenceShow/hide protein sequence
QIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKV
C