CuGenDBv2

Gene ID	MS021868
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Mitochondrial
Genome location	scaffold1:888281..888763
RNA-Seq Expression	MS021868
Synteny	MS021868
Gene Ontology terms	GO:0005762 - mitochondrial large ribosomal subunit (cellular component) GO:0004386 - helicase activity (molecular function)
InterPro domains	IPR019716 - Ribosomal protein L53, mitochondrial

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7024167.1 hypothetical protein SDJN02_12980, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.0e-56

93.33

Show/hide

Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDQPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKV+IEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDD PPQIAVTFVNGVEEVFDATSTP+QTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDQPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPIVIPEEELRQPTPSIKV
        TWP++IP+EEL QP PSIKV
Subjt:  TWPIVIPEEELRQPTPSIKV

XP_022139291.1 uncharacterized protein LOC111010210 [Momordica charantia]

5.5e-59

100

Show/hide

Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDQPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDQPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDQPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPIVIPEEELRQPTPSIK
        TWPIVIPEEELRQPTPSIK
Subjt:  TWPIVIPEEELRQPTPSIK

XP_022974807.1 uncharacterized protein LOC111473560 isoform X2 [Cucurbita maxima]

1.3e-55

93.28

Show/hide

Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDQPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRL SCMEFLAQCNARKAKESNPACQLIVKRRTDD PPQI VTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDQPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPIVIPEEELRQPTPSIK
        TWP++IP+EEL QP PSIK
Subjt:  TWPIVIPEEELRQPTPSIK

XP_022974808.1 uncharacterized protein LOC111473560 isoform X3 [Cucurbita maxima]

9.7e-56

92.5

Show/hide

Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDQPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRL SCMEFLAQCNARKAKESNPACQLIVKRRTDD PPQI VTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDQPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPIVIPEEELRQPTPSIKV
        TWP++IP+EEL QP PSIK+
Subjt:  TWPIVIPEEELRQPTPSIKV

XP_023536065.1 uncharacterized protein LOC111797318 [Cucurbita pepo subsp. pepo]

7.5e-56

93.28

Show/hide

Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDQPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVK+EFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDD PPQIAVTFVNGVEEVFDATSTPAQTIRN ILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDQPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPIVIPEEELRQPTPSIK
        TWP++IP+EEL QP PSIK
Subjt:  TWPIVIPEEELRQPTPSIK

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CC86 uncharacterized protein LOC111010210

2.7e-59

100

Show/hide

Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDQPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDQPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDQPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPIVIPEEELRQPTPSIK
        TWPIVIPEEELRQPTPSIK
Subjt:  TWPIVIPEEELRQPTPSIK

A0A6J1IB98 uncharacterized protein LOC111473560 isoform X2

6.2e-56

93.28

Show/hide

Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDQPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRL SCMEFLAQCNARKAKESNPACQLIVKRRTDD PPQI VTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDQPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPIVIPEEELRQPTPSIK
        TWP++IP+EEL QP PSIK
Subjt:  TWPIVIPEEELRQPTPSIK

A0A6J1IEW0 uncharacterized protein LOC111473560 isoform X1

6.2e-56

93.28

Show/hide

Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDQPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRL SCMEFLAQCNARKAKESNPACQLIVKRRTDD PPQI VTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDQPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPIVIPEEELRQPTPSIK
        TWP++IP+EEL QP PSIK
Subjt:  TWPIVIPEEELRQPTPSIK

A0A6J1IHE6 uncharacterized protein LOC111473560 isoform X3

4.7e-56

92.5

Show/hide

Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDQPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRL SCMEFLAQCNARKAKESNPACQLIVKRRTDD PPQI VTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDQPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPIVIPEEELRQPTPSIKV
        TWP++IP+EEL QP PSIK+
Subjt:  TWPIVIPEEELRQPTPSIKV

A0A6J1IZE5 uncharacterized protein LOC111481279

6.8e-55

92.44

Show/hide

Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDQPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDD PPQIAVTFVNGVEEVFDATSTPAQTIR  ILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDQPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPIVIPEEELRQPTPSIK
        TWP++IP+EEL  P PSIK
Subjt:  TWPIVIPEEELRQPTPSIK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G39600.1 CONTAINS InterPro DOMAIN/s: Ribosomal protein L53, mitochondrial (InterPro:IPR019716); Has 50 Blast hits to 50 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

5.9e-51

78.99

Show/hide

Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDQPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKV+IEFN LDPRLASC+EFLAQCNARKAKESNP CQ++VKRRTD+QPPQI VTFVNGVEE FDA +T AQ+IR MIL+KGQ LETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDQPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPIVIPEEELRQPTPSIK
         WP++IP+EEL Q  P +K
Subjt:  TWPIVIPEEELRQPTPSIK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTTGAAGTTCCTGTCTAAAGTGAAGATCGAATTCAATGCCCTGGATCCACGCTTAGCTTCTTGTATGGAATTTTTGGCGCAGTGTAATGCTCGCAAGGCCAAGGAATC
GAACCCCGCTTGTCAGTTGATCGTCAAGCGCCGAACCGACGACCAGCCGCCCCAGATCGCCGTCACCTTCGTCAATGGAGTTGAGGAGGTTTTCGACGCTACCTCCACTC
CTGCTCAAACTATTAGGAATATGATTCTTGAGAAGGGCCAACTCCTTGAGACCGAGCAAATGTTCCGAGAGGCTGGCGAAACTTGGCCGATCGTCATCCCCGAGGAGGAG
CTTCGTCAACCTACTCCCAGCATCAAGGTTACTTCCTTTTTTGTTCTCCCTTACTGCAAATATTTCTTCTGCTTGGGTTTTCACTTTGGTACTGTTTTACTTATGGCATT
TTGTCGAACAACAGACGTGCACGAAATAGTCTTACGAATTTTC

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDQPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGETWPIVIPEEE
LRQPTPSIKVTSFFVLPYCKYFFCLGFHFGTVLLMAFCRTTDVHEIVLRIF

MS021868 (gene) of Bitter gourd (TR) v1 genome