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MS021877 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS021877
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionglycine-rich RNA-binding protein 2-like
Genome locationscaffold1:928147..928668
RNA-Seq ExpressionMS021877
SyntenyMS021877
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6608571.1 hypothetical protein SDJN03_01913, partial [Cucurbita argyrosperma subsp. sororia]1.2e-4663.93Show/hide
Query:  VVFAALIYGSMADGLKNGTMRTNVTFLTFSE------GRNESSSNTTTTVEVSKQNGSGRGGGGGYGWGWGWGGGG-----------------GGGGGGW
        V F   +YGS A+GLKNG      TFLTFSE      G   +SS  TTTVEVSKQN   RGGGGGYGWGWG GGGG                 GGGGGGW
Subjt:  VVFAALIYGSMADGLKNGTMRTNVTFLTFSE------GRNESSSNTTTTVEVSKQNGSGRGGGGGYGWGWGWGGGG-----------------GGGGGGW

Query:  WKWGCGGQPKSGRGGGGRRRGSGRNQNHVFRKRMYDEGDYKTGEFGQCVVRGRCRGMRLDCPLHCGGPCFYDCRYMCKAHCRR
        WKWGCGGQPKSGR GGGRR+       +V RKR+Y+E DY  GEF +C+V+GRCRGMRLDCPLHCGGPCFYDCRYMCKAHCRR
Subjt:  WKWGCGGQPKSGRGGGGRRRGSGRNQNHVFRKRMYDEGDYKTGEFGQCVVRGRCRGMRLDCPLHCGGPCFYDCRYMCKAHCRR

KAG7037889.1 hypothetical protein SDJN02_01520, partial [Cucurbita argyrosperma subsp. argyrosperma]5.8e-4661.7Show/hide
Query:  VVFAALIYGSMADGLKNGTMRTNVTFLTFSE------GRNESSSNTTTTVEVSKQNGSGRGGGGGYGWGWGWGGGG----------------------GG
        + F   +YGS A+GLKNG      TFLTFSE      G   +SS  TTTVEVSKQN   RGGGGGYGWGWG GGGG                      GG
Subjt:  VVFAALIYGSMADGLKNGTMRTNVTFLTFSE------GRNESSSNTTTTVEVSKQNGSGRGGGGGYGWGWGWGGGG----------------------GG

Query:  GGGGWWKWGCGGQPKSGRGGGGRRRGSGRNQNHVFRKRMYDEGDYKTGEFGQCVVRGRCRGMRLDCPLHCGGPCFYDCRYMCKAHCRR
        GGGGWWKWGCGGQPKSGR GGGRR+       +V RKR+Y+E DY  GEF +C+V+GRCRGMRLDCPLHCGGPCFYDCRYMCKAHCRR
Subjt:  GGGGWWKWGCGGQPKSGRGGGGRRRGSGRNQNHVFRKRMYDEGDYKTGEFGQCVVRGRCRGMRLDCPLHCGGPCFYDCRYMCKAHCRR

XP_008455258.1 PREDICTED: keratin, type II cytoskeletal 1 [Cucumis melo]2.2e-4561.31Show/hide
Query:  MACQNLMKFCALAVVFAALIYGS-MADGLKNGTMRTNVTFLTFSE------GRNESSSNTTTTVEVSKQNGSGRGGGGGYGWGWGWGGGG----------
        M  +N +K  AL V+ A +IYGS  A+GL NG+M  NVTFLTFSE      G   +SS+ T+TVEVSKQNG G GGGGGYGWGWG GGGG          
Subjt:  MACQNLMKFCALAVVFAALIYGS-MADGLKNGTMRTNVTFLTFSE------GRNESSSNTTTTVEVSKQNGSGRGGGGGYGWGWGWGGGG----------

Query:  ---------GGGGGGWWKWGCGGQPKSGRGGGGRRRGSGRNQNHVFRKRMYDEGDYKTGEFGQCVVRGRCRGMRLDCPLHCGGPCFYDCRYMCKAHCRR
                 GGGGGGWWKWGCGG+PK  +   GRR  +GR +N V RK+MY+E DY+ GEF QC+V+GRCRGMRLDCPLHCGGPCFYDCRYMCKAHC R
Subjt:  ---------GGGGGGWWKWGCGGQPKSGRGGGGRRRGSGRNQNHVFRKRMYDEGDYKTGEFGQCVVRGRCRGMRLDCPLHCGGPCFYDCRYMCKAHCRR

XP_011659711.1 keratin, type II cytoskeletal 2 epidermal [Cucumis sativus]1.4e-4462.24Show/hide
Query:  MACQNLMKFCALAVVFAALIYGS-MADGLKNGTMRTNVTFLTFSE------GRNESSSNTTTTVEVSKQNGSGRGGGGGYGWGWGWGGGG----------
        M  +N +K  AL V+ A +I GS  A+GL NG+M  NVTFLTFSE      G   +SS+ +TTVEVSKQNG   GGGGGYGWGWG GGGG          
Subjt:  MACQNLMKFCALAVVFAALIYGS-MADGLKNGTMRTNVTFLTFSE------GRNESSSNTTTTVEVSKQNGSGRGGGGGYGWGWGWGGGG----------

Query:  ------GGGGGGWWKWGCGGQPKSGRGGGGRRRGSGRNQNHVFRKRMYDEGDYKTGEFGQCVVRGRCRGMRLDCPLHCGGPCFYDCRYMCKAHCRR
              GGGGGGWWKWGCGGQPKS R   GRR  +G ++N V  KRMY E DY+ GEF QC+V+GRCRGMRLDCPLHCGGPCFYDCRYMCKAHC R
Subjt:  ------GGGGGGWWKWGCGGQPKSGRGGGGRRRGSGRNQNHVFRKRMYDEGDYKTGEFGQCVVRGRCRGMRLDCPLHCGGPCFYDCRYMCKAHCRR

XP_022940700.1 glycine-rich RNA-binding protein 2-like [Cucurbita moschata]2.2e-4564.77Show/hide
Query:  IYGSMADGLKNGTMRTNVTFLTFSE------GRNESSSNTTTTVEVSKQNGSGRGGGGGYGWGWGWGGGG----------------GGGGGGWWKWGCGG
        +YGS A+GLKNG      TFLTFSE      G   +SS  TTTVEVSKQN   RGGGGGYGWGWG GGGG                GGGGGGWWKWGCGG
Subjt:  IYGSMADGLKNGTMRTNVTFLTFSE------GRNESSSNTTTTVEVSKQNGSGRGGGGGYGWGWGWGGGG----------------GGGGGGWWKWGCGG

Query:  QPKSGRGGGGRRRGSGRNQNHVFRKRMYDEGDYKTGEFGQCVVRGRCRGMRLDCPLHCGGPCFYDCRYMCKAHCRR
        QPKSGR GGGRR+       +V RKR+Y+E DY  GEF +C+V+GRCRGMRLDCPLHCGGPCFYDCR+MCKAHCRR
Subjt:  QPKSGRGGGGRRRGSGRNQNHVFRKRMYDEGDYKTGEFGQCVVRGRCRGMRLDCPLHCGGPCFYDCRYMCKAHCRR

TrEMBL top hitse value%identityAlignment
A0A0A0K766 Uncharacterized protein6.9e-4562.24Show/hide
Query:  MACQNLMKFCALAVVFAALIYGS-MADGLKNGTMRTNVTFLTFSE------GRNESSSNTTTTVEVSKQNGSGRGGGGGYGWGWGWGGGG----------
        M  +N +K  AL V+ A +I GS  A+GL NG+M  NVTFLTFSE      G   +SS+ +TTVEVSKQNG   GGGGGYGWGWG GGGG          
Subjt:  MACQNLMKFCALAVVFAALIYGS-MADGLKNGTMRTNVTFLTFSE------GRNESSSNTTTTVEVSKQNGSGRGGGGGYGWGWGWGGGG----------

Query:  ------GGGGGGWWKWGCGGQPKSGRGGGGRRRGSGRNQNHVFRKRMYDEGDYKTGEFGQCVVRGRCRGMRLDCPLHCGGPCFYDCRYMCKAHCRR
              GGGGGGWWKWGCGGQPKS R   GRR  +G ++N V  KRMY E DY+ GEF QC+V+GRCRGMRLDCPLHCGGPCFYDCRYMCKAHC R
Subjt:  ------GGGGGGWWKWGCGGQPKSGRGGGGRRRGSGRNQNHVFRKRMYDEGDYKTGEFGQCVVRGRCRGMRLDCPLHCGGPCFYDCRYMCKAHCRR

A0A1S3C029 keratin, type II cytoskeletal 11.1e-4561.31Show/hide
Query:  MACQNLMKFCALAVVFAALIYGS-MADGLKNGTMRTNVTFLTFSE------GRNESSSNTTTTVEVSKQNGSGRGGGGGYGWGWGWGGGG----------
        M  +N +K  AL V+ A +IYGS  A+GL NG+M  NVTFLTFSE      G   +SS+ T+TVEVSKQNG G GGGGGYGWGWG GGGG          
Subjt:  MACQNLMKFCALAVVFAALIYGS-MADGLKNGTMRTNVTFLTFSE------GRNESSSNTTTTVEVSKQNGSGRGGGGGYGWGWGWGGGG----------

Query:  ---------GGGGGGWWKWGCGGQPKSGRGGGGRRRGSGRNQNHVFRKRMYDEGDYKTGEFGQCVVRGRCRGMRLDCPLHCGGPCFYDCRYMCKAHCRR
                 GGGGGGWWKWGCGG+PK  +   GRR  +GR +N V RK+MY+E DY+ GEF QC+V+GRCRGMRLDCPLHCGGPCFYDCRYMCKAHC R
Subjt:  ---------GGGGGGWWKWGCGGQPKSGRGGGGRRRGSGRNQNHVFRKRMYDEGDYKTGEFGQCVVRGRCRGMRLDCPLHCGGPCFYDCRYMCKAHCRR

A0A5D2KXD0 Uncharacterized protein6.7e-3274.14Show/hide
Query:  GSGRGGGGGYGWGWGWGGGG---GGGGGGWWKWGCGGQPKSGRGGG-GRRRGS-GRNQNHVFRKRMYDEGDYKTGEFGQCVVRGRCRGMRLDCPLHCGGP
        G G GGGGGYGWGWG GGGG   GGGGGGW+KWGCGG+ K+G+G G GR +GS GRNQ H  RKR++++ DYK GEF QC VRGRCRGMRLDCPLHCGGP
Subjt:  GSGRGGGGGYGWGWGWGGGG---GGGGGGWWKWGCGGQPKSGRGGG-GRRRGS-GRNQNHVFRKRMYDEGDYKTGEFGQCVVRGRCRGMRLDCPLHCGGP

Query:  CFYDCRYMCKAHCRRP
        C YDC++MCKAHCRRP
Subjt:  CFYDCRYMCKAHCRRP

A0A5J5RFA8 Uncharacterized protein8.7e-3273.5Show/hide
Query:  GSGRGGGGGYGWGWGWGGGG----GGGGGGWWKWGCGGQPKSGRGGG-GRRRGS-GRNQNHVFRKRMYDEGDYKTGEFGQCVVRGRCRGMRLDCPLHCGG
        G G GGGGGYGWGWG GGGG    GGGGGGW+KWGCGG+ K+G+G G GR +GS GRNQ H  RKR++++ DYK GEF QC VRGRCRGMRLDCPLHCGG
Subjt:  GSGRGGGGGYGWGWGWGGGG----GGGGGGWWKWGCGGQPKSGRGGG-GRRRGS-GRNQNHVFRKRMYDEGDYKTGEFGQCVVRGRCRGMRLDCPLHCGG

Query:  PCFYDCRYMCKAHCRRP
        PC YDC++MCKAHCRRP
Subjt:  PCFYDCRYMCKAHCRRP

A0A6J1FRC8 glycine-rich RNA-binding protein 2-like1.1e-4564.77Show/hide
Query:  IYGSMADGLKNGTMRTNVTFLTFSE------GRNESSSNTTTTVEVSKQNGSGRGGGGGYGWGWGWGGGG----------------GGGGGGWWKWGCGG
        +YGS A+GLKNG      TFLTFSE      G   +SS  TTTVEVSKQN   RGGGGGYGWGWG GGGG                GGGGGGWWKWGCGG
Subjt:  IYGSMADGLKNGTMRTNVTFLTFSE------GRNESSSNTTTTVEVSKQNGSGRGGGGGYGWGWGWGGGG----------------GGGGGGWWKWGCGG

Query:  QPKSGRGGGGRRRGSGRNQNHVFRKRMYDEGDYKTGEFGQCVVRGRCRGMRLDCPLHCGGPCFYDCRYMCKAHCRR
        QPKSGR GGGRR+       +V RKR+Y+E DY  GEF +C+V+GRCRGMRLDCPLHCGGPCFYDCR+MCKAHCRR
Subjt:  QPKSGRGGGGRRRGSGRNQNHVFRKRMYDEGDYKTGEFGQCVVRGRCRGMRLDCPLHCGGPCFYDCRYMCKAHCRR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G75550.1 glycine-rich protein1.8e-1642.54Show/hide
Query:  MKFCALAVVFAALIYGSMADGLKNGTMRTNVTFLTFSEGRNESSSNTTTTVEVSKQNGSGRGGGGGYGWGW----------GWGGGGGGGGGGWWKWGCG
        MK  +  VV   LI     + L +G  R+N       +  N   ++TTT V V  +  S  GG G Y WGW          G GGGGGGGGGG W WG G
Subjt:  MKFCALAVVFAALIYGSMADGLKNGTMRTNVTFLTFSEGRNESSSNTTTTVEVSKQNGSGRGGGGGYGWGW----------GWGGGGGGGGGGWWKWGCG

Query:  GQP----KSGRGGGGRRRGSGRNQNHVFRKRMYDEGDYKTGEFGQCVVRGRCRGMRLDCPLHCGGPCFYDCRYMCKAHCRR
        G      K G GGGG  +G GR     F KR          E+ +C  RG+C G RL+CP HCGG CFYDC ++CK HCRR
Subjt:  GQP----KSGRGGGGRRRGSGRNQNHVFRKRMYDEGDYKTGEFGQCVVRGRCRGMRLDCPLHCGGPCFYDCRYMCKAHCRR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTGCCAAAATCTAATGAAATTCTGCGCTCTGGCGGTGGTTTTTGCGGCACTGATTTATGGGTCAATGGCGGATGGTTTGAAAAATGGCACAATGCGTACTAATGT
CACTTTTCTGACGTTCTCGGAGGGAAGAAATGAGAGCTCTAGCAATACTACTACTACGGTTGAGGTGAGCAAGCAGAACGGCTCCGGCAGAGGAGGCGGCGGTGGCTATG
GGTGGGGGTGGGGGTGGGGCGGCGGAGGAGGCGGCGGCGGAGGTGGGTGGTGGAAATGGGGTTGTGGAGGACAGCCGAAATCGGGACGCGGCGGCGGAGGGAGAAGAAGA
GGGTCCGGGAGGAATCAAAATCATGTATTCAGGAAGAGAATGTACGATGAGGGAGATTATAAAACAGGGGAATTTGGTCAATGCGTGGTGAGAGGAAGATGCAGAGGAAT
GAGATTGGACTGCCCACTTCACTGCGGCGGGCCTTGCTTCTACGACTGCCGGTACATGTGCAAGGCCCACTGCCGACGCCCC
mRNA sequenceShow/hide mRNA sequence
ATGGCCTGCCAAAATCTAATGAAATTCTGCGCTCTGGCGGTGGTTTTTGCGGCACTGATTTATGGGTCAATGGCGGATGGTTTGAAAAATGGCACAATGCGTACTAATGT
CACTTTTCTGACGTTCTCGGAGGGAAGAAATGAGAGCTCTAGCAATACTACTACTACGGTTGAGGTGAGCAAGCAGAACGGCTCCGGCAGAGGAGGCGGCGGTGGCTATG
GGTGGGGGTGGGGGTGGGGCGGCGGAGGAGGCGGCGGCGGAGGTGGGTGGTGGAAATGGGGTTGTGGAGGACAGCCGAAATCGGGACGCGGCGGCGGAGGGAGAAGAAGA
GGGTCCGGGAGGAATCAAAATCATGTATTCAGGAAGAGAATGTACGATGAGGGAGATTATAAAACAGGGGAATTTGGTCAATGCGTGGTGAGAGGAAGATGCAGAGGAAT
GAGATTGGACTGCCCACTTCACTGCGGCGGGCCTTGCTTCTACGACTGCCGGTACATGTGCAAGGCCCACTGCCGACGCCCC
Protein sequenceShow/hide protein sequence
MACQNLMKFCALAVVFAALIYGSMADGLKNGTMRTNVTFLTFSEGRNESSSNTTTTVEVSKQNGSGRGGGGGYGWGWGWGGGGGGGGGGWWKWGCGGQPKSGRGGGGRRR
GSGRNQNHVFRKRMYDEGDYKTGEFGQCVVRGRCRGMRLDCPLHCGGPCFYDCRYMCKAHCRRP