; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS021936 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS021936
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPhotosystem I reaction center subunit IV
Genome locationscaffold110:353400..354494
RNA-Seq ExpressionMS021936
SyntenyMS021936
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0009538 - photosystem I reaction center (cellular component)
InterPro domainsIPR003375 - Photosystem I PsaE, reaction centre subunit IV
IPR008990 - Electron transport accessory-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008441802.1 PREDICTED: photosystem I reaction center subunit IV, chloroplastic-like [Cucumis melo]1.4e-5387.76Show/hide
Query:  LAMAATNLSCIASGVVIPSSATI-SSSSRLTSVAFFPKNPNPISR--RLVIRAAA-DEAAPPPPAAAATADAPVEEAKPKPAPIGPKRGAKVKILRKESY
        +AMAA+NLSCIASGVVIPSS TI SSSSRL+S+AFFPKN N ISR  RLVIRAAA DEAAPPPPAAA  A A  EE KPKPAPIGPKRGAKVKILRKESY
Subjt:  LAMAATNLSCIASGVVIPSSATI-SSSSRLTSVAFFPKNPNPISR--RLVIRAAA-DEAAPPPPAAAATADAPVEEAKPKPAPIGPKRGAKVKILRKESY

Query:  WYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA
        WYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDE+EEVA
Subjt:  WYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA

XP_022144405.1 photosystem I reaction center subunit IV, chloroplastic-like [Momordica charantia]2.4e-66100Show/hide
Query:  MAATNLSCIASGVVIPSSATISSSSRLTSVAFFPKNPNPISRRLVIRAAADEAAPPPPAAAATADAPVEEAKPKPAPIGPKRGAKVKILRKESYWYKDVG
        MAATNLSCIASGVVIPSSATISSSSRLTSVAFFPKNPNPISRRLVIRAAADEAAPPPPAAAATADAPVEEAKPKPAPIGPKRGAKVKILRKESYWYKDVG
Subjt:  MAATNLSCIASGVVIPSSATISSSSRLTSVAFFPKNPNPISRRLVIRAAADEAAPPPPAAAATADAPVEEAKPKPAPIGPKRGAKVKILRKESYWYKDVG

Query:  SVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA
        SVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA
Subjt:  SVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA

XP_022937722.1 photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita moschata]6.6e-5687.41Show/hide
Query:  MAATNLSCIASGVVIPSSATISSSSRLTSVAFFPKNPNPISR--RLVIRAAADEAAPPPPAAAATADAPVEEAKPKPAPIGPKRGAKVKILRKESYWYKD
        MAA+NLSCIASGV+IPSS TISSSSR +SVAFFPKN   ISR  RLV+RAAADEAA PPPAAAATADAP E  KPKPAPIGPKRG KVKILR+ESYWYKD
Subjt:  MAATNLSCIASGVVIPSSATISSSSRLTSVAFFPKNPNPISR--RLVIRAAADEAAPPPPAAAATADAPVEEAKPKPAPIGPKRGAKVKILRKESYWYKD

Query:  VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA
        VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDE+EEVA
Subjt:  VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA

XP_022965997.1 photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita maxima]1.1e-5587.41Show/hide
Query:  MAATNLSCIASGVVIPSSATISSSSRLTSVAFFPKNPNPISR--RLVIRAAADEAAPPPPAAAATADAPVEEAKPKPAPIGPKRGAKVKILRKESYWYKD
        MAA+NLSCIASGV+IPSS TISSSSR +SVAFFPKN   ISR  RLV+RAAADEAA PPPAAAATADAP E  KPKPAPIGPKRG KVKILR+ESYWYKD
Subjt:  MAATNLSCIASGVVIPSSATISSSSRLTSVAFFPKNPNPISR--RLVIRAAADEAAPPPPAAAATADAPVEEAKPKPAPIGPKRGAKVKILRKESYWYKD

Query:  VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA
        VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDE+EEVA
Subjt:  VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA

XP_023536804.1 photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita pepo subsp. pepo]3.9e-5688.11Show/hide
Query:  MAATNLSCIASGVVIPSSATISSSSRLTSVAFFPKNPNPISR--RLVIRAAADEAAPPPPAAAATADAPVEEAKPKPAPIGPKRGAKVKILRKESYWYKD
        MAA+NLSCIASGV+IPSS TISSSSR +SVAFFPKN   ISR  RLV+RAAADEAA PPPAAAATADAP E  KPKPAPIGPKRG KVKILRKESYWYKD
Subjt:  MAATNLSCIASGVVIPSSATISSSSRLTSVAFFPKNPNPISR--RLVIRAAADEAAPPPPAAAATADAPVEEAKPKPAPIGPKRGAKVKILRKESYWYKD

Query:  VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA
        VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDE+EEVA
Subjt:  VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA

TrEMBL top hitse value%identityAlignment
A0A0A0LJQ1 Uncharacterized protein4.8e-5285.62Show/hide
Query:  LAMAATNLSCIASGVVIPSSATI-SSSSRLTSVAFFPKNPNPISR--RLVIRAAADEAAPPPPAAAATADAPVEEAKPKPAPIGPKRGAKVKILRKESYW
        +AMAA+NLSCIASGVVIPSS TI SSSSRL+S+AFFPKN N ISR  RLVIR A+DEAAPPP A A TA A  EE KPKPAPIGPKRGAKVKILRKESYW
Subjt:  LAMAATNLSCIASGVVIPSSATI-SSSSRLTSVAFFPKNPNPISR--RLVIRAAADEAAPPPPAAAATADAPVEEAKPKPAPIGPKRGAKVKILRKESYW

Query:  YKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA
        YKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDE++EVA
Subjt:  YKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA

A0A1S3B3T3 photosystem I reaction center subunit IV, chloroplastic-like6.7e-5487.76Show/hide
Query:  LAMAATNLSCIASGVVIPSSATI-SSSSRLTSVAFFPKNPNPISR--RLVIRAAA-DEAAPPPPAAAATADAPVEEAKPKPAPIGPKRGAKVKILRKESY
        +AMAA+NLSCIASGVVIPSS TI SSSSRL+S+AFFPKN N ISR  RLVIRAAA DEAAPPPPAAA  A A  EE KPKPAPIGPKRGAKVKILRKESY
Subjt:  LAMAATNLSCIASGVVIPSSATI-SSSSRLTSVAFFPKNPNPISR--RLVIRAAA-DEAAPPPPAAAATADAPVEEAKPKPAPIGPKRGAKVKILRKESY

Query:  WYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA
        WYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDE+EEVA
Subjt:  WYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA

A0A6J1CRI6 photosystem I reaction center subunit IV, chloroplastic-like1.2e-66100Show/hide
Query:  MAATNLSCIASGVVIPSSATISSSSRLTSVAFFPKNPNPISRRLVIRAAADEAAPPPPAAAATADAPVEEAKPKPAPIGPKRGAKVKILRKESYWYKDVG
        MAATNLSCIASGVVIPSSATISSSSRLTSVAFFPKNPNPISRRLVIRAAADEAAPPPPAAAATADAPVEEAKPKPAPIGPKRGAKVKILRKESYWYKDVG
Subjt:  MAATNLSCIASGVVIPSSATISSSSRLTSVAFFPKNPNPISRRLVIRAAADEAAPPPPAAAATADAPVEEAKPKPAPIGPKRGAKVKILRKESYWYKDVG

Query:  SVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA
        SVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA
Subjt:  SVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA

A0A6J1FC09 photosystem I reaction center subunit IV, chloroplastic-like3.2e-5687.41Show/hide
Query:  MAATNLSCIASGVVIPSSATISSSSRLTSVAFFPKNPNPISR--RLVIRAAADEAAPPPPAAAATADAPVEEAKPKPAPIGPKRGAKVKILRKESYWYKD
        MAA+NLSCIASGV+IPSS TISSSSR +SVAFFPKN   ISR  RLV+RAAADEAA PPPAAAATADAP E  KPKPAPIGPKRG KVKILR+ESYWYKD
Subjt:  MAATNLSCIASGVVIPSSATISSSSRLTSVAFFPKNPNPISR--RLVIRAAADEAAPPPPAAAATADAPVEEAKPKPAPIGPKRGAKVKILRKESYWYKD

Query:  VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA
        VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDE+EEVA
Subjt:  VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA

A0A6J1HLT8 photosystem I reaction center subunit IV, chloroplastic-like5.5e-5687.41Show/hide
Query:  MAATNLSCIASGVVIPSSATISSSSRLTSVAFFPKNPNPISR--RLVIRAAADEAAPPPPAAAATADAPVEEAKPKPAPIGPKRGAKVKILRKESYWYKD
        MAA+NLSCIASGV+IPSS TISSSSR +SVAFFPKN   ISR  RLV+RAAADEAA PPPAAAATADAP E  KPKPAPIGPKRG KVKILR+ESYWYKD
Subjt:  MAATNLSCIASGVVIPSSATISSSSRLTSVAFFPKNPNPISR--RLVIRAAADEAAPPPPAAAATADAPVEEAKPKPAPIGPKRGAKVKILRKESYWYKD

Query:  VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA
        VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDE+EEVA
Subjt:  VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA

SwissProt top hitse value%identityAlignment
P12354 Photosystem I reaction center subunit IV, chloroplastic2.0e-3172.12Show/hide
Query:  NPISRRLVIRAAADEAAPPPPAAAATADAPVEEAKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEV
        +P S RLV+R AA+EAA  P AA+   +AP  +A  KP PIGPKRG+KV+I+RKESYWYK VGSVV VDQDP TRYPVVVRFNKVNYA+VSTNNYALDE+
Subjt:  NPISRRLVIRAAADEAAPPPPAAAATADAPVEEAKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEV

Query:  EEVA
        +EVA
Subjt:  EEVA

Q41228 Photosystem I reaction center subunit IV A, chloroplastic6.7e-3563.64Show/hide
Query:  MAATNLSCIASG--VVIPSSATISSSSRLTSVAFFPKNPNPISRRLVIRAAADEAAPPPPAAAA-TADAPVEEAKPKPAPIGPKRGAKVKILRKESYWYK
        MA+ N++  AS   V  P+ A+ +++SR T + F  KN    + RLV+R AA+EAAPP  AA A  A+APV+ A  KP PIGPKRG KV+ILRKESYWYK
Subjt:  MAATNLSCIASG--VVIPSSATISSSSRLTSVAFFPKNPNPISRRLVIRAAADEAAPPPPAAAA-TADAPVEEAKPKPAPIGPKRGAKVKILRKESYWYK

Query:  DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEV
          GSVV  DQDPNTRYPVVVRFNKVNYA+VSTNNYALDE+EEV
Subjt:  DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEV

Q41229 Photosystem I reaction center subunit IV B, chloroplastic2.5e-3462.76Show/hide
Query:  MAATNLSCIASG--VVIPSSATISSSSRLTSVAFFPKNPNPISR---RLVIRAAADEAAPPPPAAAATADAPVEEAKPKPAPIGPKRGAKVKILRKESYW
        MA+++++  ASG  V  P+ AT +++ R TS+ FF  + N  +    RLV+R AA+EAAPP   A A  +AP  +A  KP PIGPKRG KV++LRKESYW
Subjt:  MAATNLSCIASG--VVIPSSATISSSSRLTSVAFFPKNPNPISR---RLVIRAAADEAAPPPPAAAATADAPVEEAKPKPAPIGPKRGAKVKILRKESYW

Query:  YKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEV
        YK VGSVV VDQDPNTRYPVVVRFNKVNYA+VSTNNYALDEVEEV
Subjt:  YKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEV

Q9S714 Photosystem I reaction center subunit IV B, chloroplastic2.2e-3058.39Show/hide
Query:  LAMAATNLSCIASGVVIPSSATISSSSRLTSVAFFPKNPNPISRRLVIRAAADEAAPPPPAA-------AATADAPVEEAKPKPAPIGPKRGAKVKILRK
        +  AAT     A+   +P++    SS   T V+F P        RLV+RAA D   PP  A+       AA A A V  AK KP PIGPKRG+KVKILRK
Subjt:  LAMAATNLSCIASGVVIPSSATISSSSRLTSVAFFPKNPNPISRRLVIRAAADEAAPPPPAA-------AATADAPVEEAKPKPAPIGPKRGAKVKILRK

Query:  ESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEV
        ESYWYK+VGSVV VDQDP TRYPVVVRF KVNYA++STNNYALDEVEEV
Subjt:  ESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEV

Q9S831 Photosystem I reaction center subunit IV A, chloroplastic2.6e-3156.95Show/hide
Query:  MAATNLSCIASGVVIPSSAT--ISSSSRLTSVAFFPKNPNPISRRLVIRAAADEAAPPPPAAAATADAPVEEA--------KPKPAPIGPKRGAKVKILR
        MA T  S +    V+P++ T    +SS  +SV+F P        RLV+RAA D    P PA++++ D+P   A        KPKP PIGPKRG+KVKILR
Subjt:  MAATNLSCIASGVVIPSSAT--ISSSSRLTSVAFFPKNPNPISRRLVIRAAADEAAPPPPAAAATADAPVEEA--------KPKPAPIGPKRGAKVKILR

Query:  KESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA
        +ESYW+K+VGSVV VDQDP TRYPVVVRF KVNYA++STNNYALDEVEEVA
Subjt:  KESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA

Arabidopsis top hitse value%identityAlignment
AT2G20260.1 photosystem I subunit E-21.6e-3158.39Show/hide
Query:  LAMAATNLSCIASGVVIPSSATISSSSRLTSVAFFPKNPNPISRRLVIRAAADEAAPPPPAA-------AATADAPVEEAKPKPAPIGPKRGAKVKILRK
        +  AAT     A+   +P++    SS   T V+F P        RLV+RAA D   PP  A+       AA A A V  AK KP PIGPKRG+KVKILRK
Subjt:  LAMAATNLSCIASGVVIPSSATISSSSRLTSVAFFPKNPNPISRRLVIRAAADEAAPPPPAA-------AATADAPVEEAKPKPAPIGPKRGAKVKILRK

Query:  ESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEV
        ESYWYK+VGSVV VDQDP TRYPVVVRF KVNYA++STNNYALDEVEEV
Subjt:  ESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEV

AT4G28750.1 Photosystem I reaction centre subunit IV / PsaE protein1.9e-3256.95Show/hide
Query:  MAATNLSCIASGVVIPSSAT--ISSSSRLTSVAFFPKNPNPISRRLVIRAAADEAAPPPPAAAATADAPVEEA--------KPKPAPIGPKRGAKVKILR
        MA T  S +    V+P++ T    +SS  +SV+F P        RLV+RAA D    P PA++++ D+P   A        KPKP PIGPKRG+KVKILR
Subjt:  MAATNLSCIASGVVIPSSAT--ISSSSRLTSVAFFPKNPNPISRRLVIRAAADEAAPPPPAAAATADAPVEEA--------KPKPAPIGPKRGAKVKILR

Query:  KESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA
        +ESYW+K+VGSVV VDQDP TRYPVVVRF KVNYA++STNNYALDEVEEVA
Subjt:  KESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTAGCCATGGCTGCCACTAATCTTTCATGCATTGCTTCTGGAGTTGTGATCCCTTCTTCAGCCACCATATCATCTTCTTCTAGGTTAACTTCTGTGGCCTTCTTCCCCAA
GAATCCCAACCCCATTTCTAGAAGATTGGTTATCCGTGCTGCCGCCGATGAAGCCGCTCCCCCGCCGCCTGCTGCCGCCGCCACCGCCGATGCCCCGGTTGAGGAGGCTA
AGCCTAAGCCTGCCCCAATTGGCCCCAAGAGAGGTGCCAAGGTGAAGATTCTAAGGAAAGAGTCCTACTGGTACAAAGATGTTGGGTCTGTTGTAACAGTTGATCAGGAC
CCGAACACTCGATATCCAGTTGTGGTTAGATTTAACAAAGTAAATTATGCAAGTGTATCAACAAACAACTATGCACTTGATGAGGTTGAAGAAGTTGCT
mRNA sequenceShow/hide mRNA sequence
TTAGCCATGGCTGCCACTAATCTTTCATGCATTGCTTCTGGAGTTGTGATCCCTTCTTCAGCCACCATATCATCTTCTTCTAGGTTAACTTCTGTGGCCTTCTTCCCCAA
GAATCCCAACCCCATTTCTAGAAGATTGGTTATCCGTGCTGCCGCCGATGAAGCCGCTCCCCCGCCGCCTGCTGCCGCCGCCACCGCCGATGCCCCGGTTGAGGAGGCTA
AGCCTAAGCCTGCCCCAATTGGCCCCAAGAGAGGTGCCAAGGTGAAGATTCTAAGGAAAGAGTCCTACTGGTACAAAGATGTTGGGTCTGTTGTAACAGTTGATCAGGAC
CCGAACACTCGATATCCAGTTGTGGTTAGATTTAACAAAGTAAATTATGCAAGTGTATCAACAAACAACTATGCACTTGATGAGGTTGAAGAAGTTGCT
Protein sequenceShow/hide protein sequence
LAMAATNLSCIASGVVIPSSATISSSSRLTSVAFFPKNPNPISRRLVIRAAADEAAPPPPAAAATADAPVEEAKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQD
PNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA