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MS021948 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS021948
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionATP-dependent helicase ATRX
Genome locationscaffold110:522205..522432
RNA-Seq ExpressionMS021948
SyntenyMS021948
Gene Ontology termsGO:0000781 - chromosome, telomeric region (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0005524 - ATP binding (molecular function)
GO:0016887 - ATPase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR027417 - P-loop containing nucleoside triphosphate hydrolase
IPR038718 - SNF2-like, N-terminal domain superfamily
IPR044574 - ATPase ARIP4-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7020999.1 Protein CHROMATIN REMODELING 20 [Cucurbita argyrosperma subsp. argyrosperma]8.8e-1583.02Show/hide
Query:  QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFG---SAMSNL
        QVSGIRFMWENIIQS+RKVKSGDKGLGCILAHTMGLGKTFQV     +AM N+
Subjt:  QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFG---SAMSNL

RVW30961.1 Protein chromatin remodeling 20 [Vitis vinifera]3.0e-1579.63Show/hide
Query:  QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFGSAMSNLYYAL
        Q++GIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV  S +S + ++L
Subjt:  QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFGSAMSNLYYAL

XP_022937760.1 protein CHROMATIN REMODELING 20 isoform X3 [Cucurbita moschata]8.8e-1583.02Show/hide
Query:  QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFG---SAMSNL
        QVSGIRFMWENIIQS+RKVKSGDKGLGCILAHTMGLGKTFQV     +AM N+
Subjt:  QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFG---SAMSNL

XP_022965424.1 protein CHROMATIN REMODELING 20 isoform X1 [Cucurbita maxima]8.8e-1583.02Show/hide
Query:  QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFG---SAMSNL
        QVSGIRFMWENIIQS+RKVKSGDKGLGCILAHTMGLGKTFQV     +AM N+
Subjt:  QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFG---SAMSNL

XP_022965425.1 protein CHROMATIN REMODELING 20 isoform X2 [Cucurbita maxima]8.8e-1583.02Show/hide
Query:  QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFG---SAMSNL
        QVSGIRFMWENIIQS+RKVKSGDKGLGCILAHTMGLGKTFQV     +AM N+
Subjt:  QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFG---SAMSNL

TrEMBL top hitse value%identityAlignment
A0A0A0LH69 Uncharacterized protein1.7e-1695.74Show/hide
Query:  LLQVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFGS
        LLQ+SGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVF S
Subjt:  LLQVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFGS

A0A438D6A1 Protein chromatin remodeling 201.5e-1579.63Show/hide
Query:  QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFGSAMSNLYYAL
        Q++GIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV  S +S + ++L
Subjt:  QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFGSAMSNLYYAL

A0A6J1HLN1 ATP-dependent helicase ATRX4.2e-1583.02Show/hide
Query:  QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFG---SAMSNL
        QVSGIRFMWENIIQS+RKVKSGDKGLGCILAHTMGLGKTFQV     +AM N+
Subjt:  QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFG---SAMSNL

A0A6J1HNN1 ATP-dependent helicase ATRX4.2e-1583.02Show/hide
Query:  QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFG---SAMSNL
        QVSGIRFMWENIIQS+RKVKSGDKGLGCILAHTMGLGKTFQV     +AM N+
Subjt:  QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFG---SAMSNL

A0A6J1HQY8 ATP-dependent helicase ATRX4.2e-1583.02Show/hide
Query:  QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFG---SAMSNL
        QVSGIRFMWENIIQS+RKVKSGDKGLGCILAHTMGLGKTFQV     +AM N+
Subjt:  QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFG---SAMSNL

SwissProt top hitse value%identityAlignment
A4IHD2 Helicase ARIP44.8e-0857.14Show/hide
Query:  QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV
        Q+ GIRF+++N+++S+ +  SG  G GCILAH+MGLGKT QV
Subjt:  QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV

F4HW51 Protein CHROMATIN REMODELING 202.8e-1692.86Show/hide
Query:  QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV
        QV+GIRFMWENIIQSI +VKSGDKGLGCILAHTMGLGKTFQV
Subjt:  QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV

P46100 Transcriptional regulator ATRX9.1e-0757.14Show/hide
Query:  QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV
        QV G++FMW+   +S++K K    G GCILAH MGLGKT QV
Subjt:  QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV

Q99NG0 Helicase ARIP41.4e-0754.76Show/hide
Query:  QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV
        Q+ GIRF+++N+++S+ + K+   G GCILAH+MGLGKT QV
Subjt:  QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV

Q9Y4B4 Helicase ARIP41.4e-0754.76Show/hide
Query:  QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV
        Q+ GIRF+++N+++S+ + K+   G GCILAH+MGLGKT QV
Subjt:  QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV

Arabidopsis top hitse value%identityAlignment
AT1G08600.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein2.0e-1792.86Show/hide
Query:  QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV
        QV+GIRFMWENIIQSI +VKSGDKGLGCILAHTMGLGKTFQV
Subjt:  QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV

AT1G08600.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein2.0e-1792.86Show/hide
Query:  QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV
        QV+GIRFMWENIIQSI +VKSGDKGLGCILAHTMGLGKTFQV
Subjt:  QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV

AT1G08600.3 P-loop containing nucleoside triphosphate hydrolases superfamily protein2.0e-1792.86Show/hide
Query:  QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV
        QV+GIRFMWENIIQSI +VKSGDKGLGCILAHTMGLGKTFQV
Subjt:  QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV

AT1G08600.4 P-loop containing nucleoside triphosphate hydrolases superfamily protein2.0e-1792.86Show/hide
Query:  QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV
        QV+GIRFMWENIIQSI +VKSGDKGLGCILAHTMGLGKTFQV
Subjt:  QVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TATTGTCTTCTGCTGCAGGTTTCTGGAATAAGATTTATGTGGGAAAATATCATTCAATCAATAAGGAAAGTGAAGTCTGGTGATAAAGGCCTTGGATGTATTCTTGCTCA
TACAATGGGCCTTGGTAAAACTTTCCAGGTATTTGGTTCTGCAATGAGCAATCTCTATTATGCTCTTGTTTATGCATCCAATTTTTTTCCTCTTCTAACAAATAGAAAAA
ATGATAAA
mRNA sequenceShow/hide mRNA sequence
TATTGTCTTCTGCTGCAGGTTTCTGGAATAAGATTTATGTGGGAAAATATCATTCAATCAATAAGGAAAGTGAAGTCTGGTGATAAAGGCCTTGGATGTATTCTTGCTCA
TACAATGGGCCTTGGTAAAACTTTCCAGGTATTTGGTTCTGCAATGAGCAATCTCTATTATGCTCTTGTTTATGCATCCAATTTTTTTCCTCTTCTAACAAATAGAAAAA
ATGATAAA
Protein sequenceShow/hide protein sequence
YCLLLQVSGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVFGSAMSNLYYALVYASNFFPLLTNRKNDK