CuGenDBv2

Gene ID	MS021951
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	ATP-dependent helicase ATRX
Genome location	scaffold110:534737..535306
RNA-Seq Expression	MS021951
Synteny	MS021951
Gene Ontology terms	GO:0000781 - chromosome, telomeric region (cellular component) GO:0005634 - nucleus (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function) GO:0046872 - metal ion binding (molecular function) GO:0070615 - nucleosome-dependent ATPase activity (molecular function)
InterPro domains	IPR000330 - SNF2, N-terminal IPR014001 - Helicase superfamily 1/2, ATP-binding domain IPR027417 - P-loop containing nucleoside triphosphate hydrolase IPR038718 - SNF2-like, N-terminal domain superfamily IPR044574 - ATPase ARIP4-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

TYJ98677.1 protein CHROMATIN REMODELING 20 isoform X1 [Cucumis melo var. makuwa]

7.0e-71

100

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Query:  DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG
        DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG
Subjt:  DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG

Query:  FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL
        FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL
Subjt:  FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL

XP_008441780.1 PREDICTED: protein CHROMATIN REMODELING 20 isoform X1 [Cucumis melo]

7.0e-71

100

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Query:  DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG
        DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG
Subjt:  DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG

Query:  FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL
        FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL
Subjt:  FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL

XP_011649018.1 protein CHROMATIN REMODELING 20 isoform X2 [Cucumis sativus]

7.0e-71

100

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Query:  DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG
        DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG
Subjt:  DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG

Query:  FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL
        FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL
Subjt:  FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL

XP_031736981.1 protein CHROMATIN REMODELING 20 isoform X3 [Cucumis sativus]

7.0e-71

100

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Query:  DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG
        DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG
Subjt:  DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG

Query:  FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL
        FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL
Subjt:  FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL

XP_038889289.1 protein CHROMATIN REMODELING 20 [Benincasa hispida]

7.0e-71

100

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Query:  DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG
        DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG
Subjt:  DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG

Query:  FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL
        FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL
Subjt:  FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B4Z9 ATP-dependent helicase ATRX

3.4e-71

100

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Query:  DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG
        DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG
Subjt:  DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG

Query:  FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL
        FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL
Subjt:  FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL

A0A1S3B502 ATP-dependent helicase ATRX

3.4e-71

100

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Query:  DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG
        DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG
Subjt:  DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG

Query:  FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL
        FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL
Subjt:  FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL

A0A5D3BHT1 Protein CHROMATIN REMODELING 20 isoform X1

3.4e-71

100

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Query:  DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG
        DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG
Subjt:  DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG

Query:  FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL
        FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL
Subjt:  FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL

A0A6J1CSD7 protein CHROMATIN REMODELING 20-like

3.4e-71

100

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Query:  DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG
        DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG
Subjt:  DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG

Query:  FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL
        FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL
Subjt:  FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL

A0A6J1D8I3 ATP-dependent helicase ATRX

3.4e-71

100

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Query:  DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG
        DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG
Subjt:  DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG

Query:  FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL
        FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL
Subjt:  FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL

SwissProt top hits

e value

%identity

Alignment

F4HW51 Protein CHROMATIN REMODELING 20

7.6e-68

93.48

Show/hide

Query:  DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG
        DILVCDEAH+IKNTKAD TQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS EFRNRFQNPIENGQH NST +DVKIMNQRSHILYEQLKG
Subjt:  DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG

Query:  FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL
        FVQRMDM VVKKDLPPKTVFVISVKLSPLQR LY+RFL
Subjt:  FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL

P46100 Transcriptional regulator ATRX

2.8e-38

52.9

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Query:  DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG
        D +VCDE H++KN  + +++A+  ++ +RRI LTG+PLQNNL+EY+CMV+F++E  LGS  EFRNRF NPI+NGQ  +ST+ DV++M +R+HILYE L G
Subjt:  DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG

Query:  FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL
         VQR D T + K LPPK  +V++V+++ +Q KLY+ +L
Subjt:  FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL

Q61687 Transcriptional regulator ATRX

1.3e-38

53.62

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Query:  DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG
        D +VCDE H++KN  + +++A+  +K +RRI LTG+PLQNNL+EY+CMV+F++E  LGS  EFRNRF NPI+NGQ  +ST+ DV++M +R+HILYE L G
Subjt:  DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG

Query:  FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL
         VQR D T + K LPPK  +V++V+++ +Q KLY+ +L
Subjt:  FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL

Q7YQM3 Transcriptional regulator ATRX

2.8e-38

52.9

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Query:  DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG
        D +VCDE H++KN  + +++A+  ++ +RRI LTG+PLQNNL+EY+CMV+F++E  LGS  EFRNRF NPI+NGQ  +ST+ DV++M +R+HILYE L G
Subjt:  DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG

Query:  FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL
         VQR D T + K LPPK  +V++V+++ +Q KLY+ +L
Subjt:  FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL

Q7YQM4 Transcriptional regulator ATRX

2.8e-38

52.9

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Query:  DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG
        D +VCDE H++KN  + +++A+  ++ +RRI LTG+PLQNNL+EY+CMV+F++E  LGS  EFRNRF NPI+NGQ  +ST+ DV++M +R+HILYE L G
Subjt:  DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG

Query:  FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL
         VQR D T + K LPPK  +V++V+++ +Q KLY+ +L
Subjt:  FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL

Arabidopsis top hits

e value

%identity

Alignment

AT1G08600.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein

5.4e-69

93.48

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Query:  DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG
        DILVCDEAH+IKNTKAD TQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS EFRNRFQNPIENGQH NST +DVKIMNQRSHILYEQLKG
Subjt:  DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG

Query:  FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL
        FVQRMDM VVKKDLPPKTVFVISVKLSPLQR LY+RFL
Subjt:  FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL

AT1G08600.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein

5.4e-69

93.48

Show/hide

Query:  DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG
        DILVCDEAH+IKNTKAD TQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS EFRNRFQNPIENGQH NST +DVKIMNQRSHILYEQLKG
Subjt:  DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG

Query:  FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL
        FVQRMDM VVKKDLPPKTVFVISVKLSPLQR LY+RFL
Subjt:  FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL

AT1G08600.3 P-loop containing nucleoside triphosphate hydrolases superfamily protein

5.4e-69

93.48

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Query:  DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG
        DILVCDEAH+IKNTKAD TQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS EFRNRFQNPIENGQH NST +DVKIMNQRSHILYEQLKG
Subjt:  DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG

Query:  FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL
        FVQRMDM VVKKDLPPKTVFVISVKLSPLQR LY+RFL
Subjt:  FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL

AT1G08600.4 P-loop containing nucleoside triphosphate hydrolases superfamily protein

5.4e-69

93.48

Show/hide

Query:  DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG
        DILVCDEAH+IKNTKAD TQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS EFRNRFQNPIENGQH NST +DVKIMNQRSHILYEQLKG
Subjt:  DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG

Query:  FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL
        FVQRMDM VVKKDLPPKTVFVISVKLSPLQR LY+RFL
Subjt:  FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL

AT3G19210.1 homolog of RAD54

3.8e-22

35.51

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Query:  DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG
        D+L+CDEAH +KN +    +AL  + C+RR+ L+G+P+QN+L E++ MV+F   G LG +  FR+ ++ PI  G+   +T ++  +   RS  L  ++  
Subjt:  DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKG

Query:  FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL
        F+ R    ++   LPPK + V+  K++ LQ  LY  F+
Subjt:  FVQRMDMTVVKKDLPPKTVFVISVKLSPLQRKLYKRFL

Sequences

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CDS sequence

Show/hide CDS sequence

GATATACTTGTTTGTGATGAGGCCCACATGATTAAAAATACCAAGGCTGATATAACCCAGGCTTTGAAACAAGTGAAATGCCAGAGAAGGATTGCGTTAACTGGATCACC
ACTACAAAACAATCTCATGGAGTATTATTGTATGGTCGATTTTGTGAGAGAAGGTTTCCTGGGAAGTAGCCATGAGTTTAGGAACCGCTTTCAGAACCCTATAGAGAATG
GGCAGCATACTAATTCAACTCTGGATGATGTTAAAATAATGAACCAGAGGTCTCATATCCTATATGAACAGTTAAAAGGGTTTGTTCAAAGAATGGACATGACTGTGGTG
AAGAAGGACTTGCCACCTAAAACTGTCTTTGTGATATCCGTTAAGCTTTCTCCCTTACAGAGGAAGTTATACAAAAGATTTCTT

mRNA sequence

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Protein sequence

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DILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMTVV
KKDLPPKTVFVISVKLSPLQRKLYKRFL

MS021951 (gene) of Bitter gourd (TR) v1 genome