CuGenDBv2

Gene ID	MS021952
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	ATP-dependent helicase ATRX
Genome location	scaffold110:541201..541410
RNA-Seq Expression	MS021952
Synteny	MS021952
Gene Ontology terms	GO:0009555 - pollen development (biological process) GO:0043007 - maintenance of rDNA (biological process) GO:1900049 - regulation of histone exchange (biological process) GO:0000781 - chromosome, telomeric region (cellular component) GO:0005634 - nucleus (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR001650 - Helicase, C-terminal IPR027417 - P-loop containing nucleoside triphosphate hydrolase IPR044574 - ATPase ARIP4-like

Homology

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GenBank top hits

e value

%identity

Alignment

CBI22318.3 unnamed protein product, partial [Vitis vinifera]

1.8e-30

95.65

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Query:  RLDGRTEGSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVVIVDGSWNPTYDLQAIYRAWR
        RLDGRTEGSERQK+VERFN+PLNKRVKCTLISTRAGSLGINLHSANRV+IVDGSWNPTYDLQAIYRAWR
Subjt:  RLDGRTEGSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVVIVDGSWNPTYDLQAIYRAWR

XP_010660170.1 PREDICTED: protein CHROMATIN REMODELING 20 isoform X1 [Vitis vinifera]

1.8e-30

95.65

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Query:  RLDGRTEGSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVVIVDGSWNPTYDLQAIYRAWR
        RLDGRTEGSERQK+VERFN+PLNKRVKCTLISTRAGSLGINLHSANRV+IVDGSWNPTYDLQAIYRAWR
Subjt:  RLDGRTEGSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVVIVDGSWNPTYDLQAIYRAWR

XP_010660172.1 PREDICTED: protein CHROMATIN REMODELING 20 isoform X2 [Vitis vinifera]

1.8e-30

95.65

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Query:  RLDGRTEGSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVVIVDGSWNPTYDLQAIYRAWR
        RLDGRTEGSERQK+VERFN+PLNKRVKCTLISTRAGSLGINLHSANRV+IVDGSWNPTYDLQAIYRAWR
Subjt:  RLDGRTEGSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVVIVDGSWNPTYDLQAIYRAWR

XP_022149939.1 protein CHROMATIN REMODELING 20-like [Momordica charantia]

3.6e-31

100

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Query:  RLDGRTEGSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVVIVDGSWNPTYDLQAIYRAWR
        RLDGRTEGSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVVIVDGSWNPTYDLQAIYRAWR
Subjt:  RLDGRTEGSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVVIVDGSWNPTYDLQAIYRAWR

XP_034706220.1 protein CHROMATIN REMODELING 20 isoform X1 [Vitis riparia]

1.8e-30

95.65

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Query:  RLDGRTEGSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVVIVDGSWNPTYDLQAIYRAWR
        RLDGRTEGSERQK+VERFN+PLNKRVKCTLISTRAGSLGINLHSANRV+IVDGSWNPTYDLQAIYRAWR
Subjt:  RLDGRTEGSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVVIVDGSWNPTYDLQAIYRAWR

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B4Z9 ATP-dependent helicase ATRX

1.1e-30

97.1

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Query:  RLDGRTEGSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVVIVDGSWNPTYDLQAIYRAWR
        RLDGRTE SERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRV+IVDGSWNPTYDLQAIYRAWR
Subjt:  RLDGRTEGSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVVIVDGSWNPTYDLQAIYRAWR

A0A1S3B502 ATP-dependent helicase ATRX

1.1e-30

97.1

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Query:  RLDGRTEGSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVVIVDGSWNPTYDLQAIYRAWR
        RLDGRTE SERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRV+IVDGSWNPTYDLQAIYRAWR
Subjt:  RLDGRTEGSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVVIVDGSWNPTYDLQAIYRAWR

A0A6J1D8I3 ATP-dependent helicase ATRX

1.7e-31

100

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Query:  RLDGRTEGSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVVIVDGSWNPTYDLQAIYRAWR
        RLDGRTEGSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVVIVDGSWNPTYDLQAIYRAWR
Subjt:  RLDGRTEGSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVVIVDGSWNPTYDLQAIYRAWR

A5C3T6 Uncharacterized protein

8.7e-31

95.65

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Query:  RLDGRTEGSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVVIVDGSWNPTYDLQAIYRAWR
        RLDGRTEGSERQK+VERFN+PLNKRVKCTLISTRAGSLGINLHSANRV+IVDGSWNPTYDLQAIYRAWR
Subjt:  RLDGRTEGSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVVIVDGSWNPTYDLQAIYRAWR

E0CU60 ATP-dependent helicase ATRX

8.7e-31

95.65

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Query:  RLDGRTEGSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVVIVDGSWNPTYDLQAIYRAWR
        RLDGRTEGSERQK+VERFN+PLNKRVKCTLISTRAGSLGINLHSANRV+IVDGSWNPTYDLQAIYRAWR
Subjt:  RLDGRTEGSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVVIVDGSWNPTYDLQAIYRAWR

SwissProt top hits

e value

%identity

Alignment

A4IHD2 Helicase ARIP4

1.2e-16

55.07

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Query:  RLDGRTEGSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVVIVDGSWNPTYDLQAIYRAWR
        RLDG T  SER++++ +FN+P N++V   L+STRAG LG+NL  ANRVV+ D SWNP +D QA+ R +R
Subjt:  RLDGRTEGSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVVIVDGSWNPTYDLQAIYRAWR

F4HW51 Protein CHROMATIN REMODELING 20

1.2e-29

85.51

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Query:  RLDGRTEGSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVVIVDGSWNPTYDLQAIYRAWR
        R+DG+TE SERQK+V+RFNEP NKRVKCTLISTRAGSLGINL++ANRV+IVDGSWNPTYDLQAI+RAWR
Subjt:  RLDGRTEGSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVVIVDGSWNPTYDLQAIYRAWR

P46100 Transcriptional regulator ATRX

3.4e-16

56.52

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Query:  RLDGRTEGSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVVIVDGSWNPTYDLQAIYRAWR
        RLDG T    R+K  E FN+  N R +  +IST+AGSLGINL +ANRV+I D SWNP+YD+Q+I+R +R
Subjt:  RLDGRTEGSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVVIVDGSWNPTYDLQAIYRAWR

Q61687 Transcriptional regulator ATRX

2.6e-16

56.52

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Query:  RLDGRTEGSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVVIVDGSWNPTYDLQAIYRAWR
        RLDG T    R+K  E FN+  N R +  +IST+AGSLGINL +ANRV+I D SWNP+YD+Q+I+R +R
Subjt:  RLDGRTEGSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVVIVDGSWNPTYDLQAIYRAWR

Q7YQM4 Transcriptional regulator ATRX

3.4e-16

56.52

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Query:  RLDGRTEGSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVVIVDGSWNPTYDLQAIYRAWR
        RLDG T    R+K  E FN+  N R +  +IST+AGSLGINL +ANRV+I D SWNP+YD+Q+I+R +R
Subjt:  RLDGRTEGSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVVIVDGSWNPTYDLQAIYRAWR

Arabidopsis top hits

e value

%identity

Alignment

AT1G03750.1 switch 2

1.6e-13

56.52

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Query:  RLDGRTEGSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVVIVDGSWNPTYDLQAIYRAWR
        RLDG T  + RQ +V+ FN   +K+V   LIST+AG LG+NL SANRVVI D +WNP++DLQA  R++R
Subjt:  RLDGRTEGSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVVIVDGSWNPTYDLQAIYRAWR

AT1G08600.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein

8.6e-31

85.51

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Query:  RLDGRTEGSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVVIVDGSWNPTYDLQAIYRAWR
        R+DG+TE SERQK+V+RFNEP NKRVKCTLISTRAGSLGINL++ANRV+IVDGSWNPTYDLQAI+RAWR
Subjt:  RLDGRTEGSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVVIVDGSWNPTYDLQAIYRAWR

AT1G08600.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein

8.6e-31

85.51

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Query:  RLDGRTEGSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVVIVDGSWNPTYDLQAIYRAWR
        R+DG+TE SERQK+V+RFNEP NKRVKCTLISTRAGSLGINL++ANRV+IVDGSWNPTYDLQAI+RAWR
Subjt:  RLDGRTEGSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVVIVDGSWNPTYDLQAIYRAWR

AT1G08600.3 P-loop containing nucleoside triphosphate hydrolases superfamily protein

8.6e-31

85.51

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Query:  RLDGRTEGSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVVIVDGSWNPTYDLQAIYRAWR
        R+DG+TE SERQK+V+RFNEP NKRVKCTLISTRAGSLGINL++ANRV+IVDGSWNPTYDLQAI+RAWR
Subjt:  RLDGRTEGSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVVIVDGSWNPTYDLQAIYRAWR

AT1G08600.4 P-loop containing nucleoside triphosphate hydrolases superfamily protein

8.6e-31

85.51

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Query:  RLDGRTEGSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVVIVDGSWNPTYDLQAIYRAWR
        R+DG+TE SERQK+V+RFNEP NKRVKCTLISTRAGSLGINL++ANRV+IVDGSWNPTYDLQAI+RAWR
Subjt:  RLDGRTEGSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVVIVDGSWNPTYDLQAIYRAWR

Sequences

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CDS sequence

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GTCAGGCTTGATGGAAGAACTGAGGGTTCCGAAAGACAGAAGATTGTTGAAAGGTTTAATGAGCCTTTAAATAAGAGGGTAAAATGTACCCTGATATCTACTAGAGCTGG
ATCATTGGGCATCAATCTTCATTCTGCTAATCGCGTCGTCATAGTGGATGGTTCTTGGAATCCAACTTATGATCTTCAGGCTATTTATCGTGCTTGGAGG

mRNA sequence

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Protein sequence

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VRLDGRTEGSERQKIVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVVIVDGSWNPTYDLQAIYRAWR

MS021952 (gene) of Bitter gourd (TR) v1 genome