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MS021953 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS021953
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionATP-dependent helicase ATRX
Genome locationscaffold110:544703..545002
RNA-Seq ExpressionMS021953
SyntenyMS021953
Gene Ontology termsGO:0000781 - chromosome, telomeric region (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0005524 - ATP binding (molecular function)
GO:0016887 - ATPase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR044574 - ATPase ARIP4-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYJ98677.1 protein CHROMATIN REMODELING 20 isoform X1 [Cucumis melo var. makuwa]6.3e-4592Show/hide
Query:  MAWEVYRKSLGWEEVQKVSPGDLTSEQKLTTSNVAHPAPETINLAQSRARNRFVTRKCTNLSHLLTLRSQGTKVGCSTVCGECAQEISWEELNRDSKLGK
        MAWEVYRKSL WEEVQKVSPGD  SEQKLTTSN AHPAPETI+LAQSRARNRFV+RKCTNLSHLLTLRSQGTKVGCSTVCGECAQEISWE+LNRD+KLGK
Subjt:  MAWEVYRKSLGWEEVQKVSPGDLTSEQKLTTSNVAHPAPETINLAQSRARNRFVTRKCTNLSHLLTLRSQGTKVGCSTVCGECAQEISWEELNRDSKLGK

XP_008441780.1 PREDICTED: protein CHROMATIN REMODELING 20 isoform X1 [Cucumis melo]6.3e-4592Show/hide
Query:  MAWEVYRKSLGWEEVQKVSPGDLTSEQKLTTSNVAHPAPETINLAQSRARNRFVTRKCTNLSHLLTLRSQGTKVGCSTVCGECAQEISWEELNRDSKLGK
        MAWEVYRKSL WEEVQKVSPGD  SEQKLTTSN AHPAPETI+LAQSRARNRFV+RKCTNLSHLLTLRSQGTKVGCSTVCGECAQEISWE+LNRD+KLGK
Subjt:  MAWEVYRKSLGWEEVQKVSPGDLTSEQKLTTSNVAHPAPETINLAQSRARNRFVTRKCTNLSHLLTLRSQGTKVGCSTVCGECAQEISWEELNRDSKLGK

XP_011649018.1 protein CHROMATIN REMODELING 20 isoform X2 [Cucumis sativus]6.3e-4592Show/hide
Query:  MAWEVYRKSLGWEEVQKVSPGDLTSEQKLTTSNVAHPAPETINLAQSRARNRFVTRKCTNLSHLLTLRSQGTKVGCSTVCGECAQEISWEELNRDSKLGK
        MAWEVYRKSL WEEVQKVSPGD  SEQKLTTSN AHPAPETI+LAQSRARNRFV+RKCTNLSHLLTLRSQGTKVGCSTVCGECAQEISWE+LNRD+KLGK
Subjt:  MAWEVYRKSLGWEEVQKVSPGDLTSEQKLTTSNVAHPAPETINLAQSRARNRFVTRKCTNLSHLLTLRSQGTKVGCSTVCGECAQEISWEELNRDSKLGK

XP_022149939.1 protein CHROMATIN REMODELING 20-like [Momordica charantia]1.9e-4999Show/hide
Query:  MAWEVYRKSLGWEEVQKVSPGDLTSEQKLTTSNVAHPAPETINLAQSRARNRFVTRKCTNLSHLLTLRSQGTKVGCSTVCGECAQEISWEELNRDSKLGK
        MAWEVYRKSLGWEEVQKVSPGDLTSEQKLTTSNVAHPAPETINLAQSRARNRF+TRKCTNLSHLLTLRSQGTKVGCSTVCGECAQEISWEELNRDSKLGK
Subjt:  MAWEVYRKSLGWEEVQKVSPGDLTSEQKLTTSNVAHPAPETINLAQSRARNRFVTRKCTNLSHLLTLRSQGTKVGCSTVCGECAQEISWEELNRDSKLGK

XP_031736981.1 protein CHROMATIN REMODELING 20 isoform X3 [Cucumis sativus]6.3e-4592Show/hide
Query:  MAWEVYRKSLGWEEVQKVSPGDLTSEQKLTTSNVAHPAPETINLAQSRARNRFVTRKCTNLSHLLTLRSQGTKVGCSTVCGECAQEISWEELNRDSKLGK
        MAWEVYRKSL WEEVQKVSPGD  SEQKLTTSN AHPAPETI+LAQSRARNRFV+RKCTNLSHLLTLRSQGTKVGCSTVCGECAQEISWE+LNRD+KLGK
Subjt:  MAWEVYRKSLGWEEVQKVSPGDLTSEQKLTTSNVAHPAPETINLAQSRARNRFVTRKCTNLSHLLTLRSQGTKVGCSTVCGECAQEISWEELNRDSKLGK

TrEMBL top hitse value%identityAlignment
A0A1S3B498 ATP-dependent helicase ATRX3.0e-4592Show/hide
Query:  MAWEVYRKSLGWEEVQKVSPGDLTSEQKLTTSNVAHPAPETINLAQSRARNRFVTRKCTNLSHLLTLRSQGTKVGCSTVCGECAQEISWEELNRDSKLGK
        MAWEVYRKSL WEEVQKVSPGD  SEQKLTTSN AHPAPETI+LAQSRARNRFV+RKCTNLSHLLTLRSQGTKVGCSTVCGECAQEISWE+LNRD+KLGK
Subjt:  MAWEVYRKSLGWEEVQKVSPGDLTSEQKLTTSNVAHPAPETINLAQSRARNRFVTRKCTNLSHLLTLRSQGTKVGCSTVCGECAQEISWEELNRDSKLGK

A0A1S3B4Z9 ATP-dependent helicase ATRX3.0e-4592Show/hide
Query:  MAWEVYRKSLGWEEVQKVSPGDLTSEQKLTTSNVAHPAPETINLAQSRARNRFVTRKCTNLSHLLTLRSQGTKVGCSTVCGECAQEISWEELNRDSKLGK
        MAWEVYRKSL WEEVQKVSPGD  SEQKLTTSN AHPAPETI+LAQSRARNRFV+RKCTNLSHLLTLRSQGTKVGCSTVCGECAQEISWE+LNRD+KLGK
Subjt:  MAWEVYRKSLGWEEVQKVSPGDLTSEQKLTTSNVAHPAPETINLAQSRARNRFVTRKCTNLSHLLTLRSQGTKVGCSTVCGECAQEISWEELNRDSKLGK

A0A1S3B502 ATP-dependent helicase ATRX3.0e-4592Show/hide
Query:  MAWEVYRKSLGWEEVQKVSPGDLTSEQKLTTSNVAHPAPETINLAQSRARNRFVTRKCTNLSHLLTLRSQGTKVGCSTVCGECAQEISWEELNRDSKLGK
        MAWEVYRKSL WEEVQKVSPGD  SEQKLTTSN AHPAPETI+LAQSRARNRFV+RKCTNLSHLLTLRSQGTKVGCSTVCGECAQEISWE+LNRD+KLGK
Subjt:  MAWEVYRKSLGWEEVQKVSPGDLTSEQKLTTSNVAHPAPETINLAQSRARNRFVTRKCTNLSHLLTLRSQGTKVGCSTVCGECAQEISWEELNRDSKLGK

A0A5D3BHT1 Protein CHROMATIN REMODELING 20 isoform X13.0e-4592Show/hide
Query:  MAWEVYRKSLGWEEVQKVSPGDLTSEQKLTTSNVAHPAPETINLAQSRARNRFVTRKCTNLSHLLTLRSQGTKVGCSTVCGECAQEISWEELNRDSKLGK
        MAWEVYRKSL WEEVQKVSPGD  SEQKLTTSN AHPAPETI+LAQSRARNRFV+RKCTNLSHLLTLRSQGTKVGCSTVCGECAQEISWE+LNRD+KLGK
Subjt:  MAWEVYRKSLGWEEVQKVSPGDLTSEQKLTTSNVAHPAPETINLAQSRARNRFVTRKCTNLSHLLTLRSQGTKVGCSTVCGECAQEISWEELNRDSKLGK

A0A6J1D8I3 ATP-dependent helicase ATRX9.1e-5099Show/hide
Query:  MAWEVYRKSLGWEEVQKVSPGDLTSEQKLTTSNVAHPAPETINLAQSRARNRFVTRKCTNLSHLLTLRSQGTKVGCSTVCGECAQEISWEELNRDSKLGK
        MAWEVYRKSLGWEEVQKVSPGDLTSEQKLTTSNVAHPAPETINLAQSRARNRF+TRKCTNLSHLLTLRSQGTKVGCSTVCGECAQEISWEELNRDSKLGK
Subjt:  MAWEVYRKSLGWEEVQKVSPGDLTSEQKLTTSNVAHPAPETINLAQSRARNRFVTRKCTNLSHLLTLRSQGTKVGCSTVCGECAQEISWEELNRDSKLGK

SwissProt top hitse value%identityAlignment
F4HW51 Protein CHROMATIN REMODELING 201.5e-1748.98Show/hide
Query:  MAWEVYRKSLGWEEVQKVSPGDLTSEQKLTTSNVAHPAPETINLAQSRARNRFVTRKCTNLSHLLTLRSQGTKVGCSTVCGECAQEISWEELNRDSKL
        MAWEVYR++L WEEVQ+V   +     K + S    P P+     +   R+RFV R CT ++H LTL SQG KVG STVCGEC + I WE++   SKL
Subjt:  MAWEVYRKSLGWEEVQKVSPGDLTSEQKLTTSNVAHPAPETINLAQSRARNRFVTRKCTNLSHLLTLRSQGTKVGCSTVCGECAQEISWEELNRDSKL

Arabidopsis top hitse value%identityAlignment
AT1G08600.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein1.1e-1848.98Show/hide
Query:  MAWEVYRKSLGWEEVQKVSPGDLTSEQKLTTSNVAHPAPETINLAQSRARNRFVTRKCTNLSHLLTLRSQGTKVGCSTVCGECAQEISWEELNRDSKL
        MAWEVYR++L WEEVQ+V   +     K + S    P P+     +   R+RFV R CT ++H LTL SQG KVG STVCGEC + I WE++   SKL
Subjt:  MAWEVYRKSLGWEEVQKVSPGDLTSEQKLTTSNVAHPAPETINLAQSRARNRFVTRKCTNLSHLLTLRSQGTKVGCSTVCGECAQEISWEELNRDSKL

AT1G08600.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein1.1e-1848.98Show/hide
Query:  MAWEVYRKSLGWEEVQKVSPGDLTSEQKLTTSNVAHPAPETINLAQSRARNRFVTRKCTNLSHLLTLRSQGTKVGCSTVCGECAQEISWEELNRDSKL
        MAWEVYR++L WEEVQ+V   +     K + S    P P+     +   R+RFV R CT ++H LTL SQG KVG STVCGEC + I WE++   SKL
Subjt:  MAWEVYRKSLGWEEVQKVSPGDLTSEQKLTTSNVAHPAPETINLAQSRARNRFVTRKCTNLSHLLTLRSQGTKVGCSTVCGECAQEISWEELNRDSKL

AT1G08600.3 P-loop containing nucleoside triphosphate hydrolases superfamily protein1.1e-1848.98Show/hide
Query:  MAWEVYRKSLGWEEVQKVSPGDLTSEQKLTTSNVAHPAPETINLAQSRARNRFVTRKCTNLSHLLTLRSQGTKVGCSTVCGECAQEISWEELNRDSKL
        MAWEVYR++L WEEVQ+V   +     K + S    P P+     +   R+RFV R CT ++H LTL SQG KVG STVCGEC + I WE++   SKL
Subjt:  MAWEVYRKSLGWEEVQKVSPGDLTSEQKLTTSNVAHPAPETINLAQSRARNRFVTRKCTNLSHLLTLRSQGTKVGCSTVCGECAQEISWEELNRDSKL

AT1G08600.4 P-loop containing nucleoside triphosphate hydrolases superfamily protein1.1e-1848.98Show/hide
Query:  MAWEVYRKSLGWEEVQKVSPGDLTSEQKLTTSNVAHPAPETINLAQSRARNRFVTRKCTNLSHLLTLRSQGTKVGCSTVCGECAQEISWEELNRDSKL
        MAWEVYR++L WEEVQ+V   +     K + S    P P+     +   R+RFV R CT ++H LTL SQG KVG STVCGEC + I WE++   SKL
Subjt:  MAWEVYRKSLGWEEVQKVSPGDLTSEQKLTTSNVAHPAPETINLAQSRARNRFVTRKCTNLSHLLTLRSQGTKVGCSTVCGECAQEISWEELNRDSKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATGGGAAGTGTACAGAAAATCATTGGGATGGGAGGAAGTGCAGAAAGTTTCGCCAGGTGATTTAACGTCCGAGCAAAAGCTAACCACGTCAAATGTCGCTCATCC
TGCACCCGAGACTATCAATCTGGCACAATCAAGGGCAAGGAACCGATTCGTTACTCGTAAATGTACTAATCTTTCCCACTTGCTGACACTAAGAAGTCAAGGGACAAAAG
TTGGCTGCAGTACAGTATGTGGAGAATGCGCTCAAGAGATAAGCTGGGAAGAGCTCAACAGAGATAGCAAGCTAGGGAAG
mRNA sequenceShow/hide mRNA sequence
ATGGCATGGGAAGTGTACAGAAAATCATTGGGATGGGAGGAAGTGCAGAAAGTTTCGCCAGGTGATTTAACGTCCGAGCAAAAGCTAACCACGTCAAATGTCGCTCATCC
TGCACCCGAGACTATCAATCTGGCACAATCAAGGGCAAGGAACCGATTCGTTACTCGTAAATGTACTAATCTTTCCCACTTGCTGACACTAAGAAGTCAAGGGACAAAAG
TTGGCTGCAGTACAGTATGTGGAGAATGCGCTCAAGAGATAAGCTGGGAAGAGCTCAACAGAGATAGCAAGCTAGGGAAG
Protein sequenceShow/hide protein sequence
MAWEVYRKSLGWEEVQKVSPGDLTSEQKLTTSNVAHPAPETINLAQSRARNRFVTRKCTNLSHLLTLRSQGTKVGCSTVCGECAQEISWEELNRDSKLGK