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MS021988 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS021988
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionAuxin efflux carrier component
Genome locationscaffold110:877175..877585
RNA-Seq ExpressionMS021988
SyntenyMS021988
Gene Ontology termsGO:0009734 - auxin-activated signaling pathway (biological process)
GO:0055085 - transmembrane transport (biological process)
GO:0060918 - auxin transport (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR004776 - Membrane transport protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049860.1 putative auxin efflux carrier component 8 [Cucumis melo var. makuwa]2.6e-6590.44Show/hide
Query:  MIGWEDAYKVVAAMAPLYFALALGYGSVRWWKIFSTEQCDAINKLVCYFTLPLFTFDFTSHIDPFHLNFPFIAADAISKLLIVVVLAFWARCTPKGSYCW
        MIGWED YKVVAAMAPLYFAL LGYGSV+WWKIFST+QCDAINKLVCYFTLPLFTF+FTSHIDPFHLNFPFIAADAI KLLIV+VLAFW +CT KGSYCW
Subjt:  MIGWEDAYKVVAAMAPLYFALALGYGSVRWWKIFSTEQCDAINKLVCYFTLPLFTFDFTSHIDPFHLNFPFIAADAISKLLIVVVLAFWARCTPKGSYCW

Query:  SITSFSLSTLTNSLVVGVPLAKVMYGQMAVDLVVQA
        SITSFSLSTLTN+LV+GVPLAKVMYG+MAVDLVVQA
Subjt:  SITSFSLSTLTNSLVVGVPLAKVMYGQMAVDLVVQA

XP_004152830.1 auxin efflux carrier component 5 [Cucumis sativus]1.5e-6591.11Show/hide
Query:  MIGWEDAYKVVAAMAPLYFALALGYGSVRWWKIFSTEQCDAINKLVCYFTLPLFTFDFTSHIDPFHLNFPFIAADAISKLLIVVVLAFWARCTPKGSYCW
        MIGW+D YKVVAAMAPLYFAL LGYGSV+WWKIFST+QCDAINKLVCYFTLPLFTFDFTSHIDPFHLNFPFIAADAI KL+IV+VLAFWA+CT KGSYCW
Subjt:  MIGWEDAYKVVAAMAPLYFALALGYGSVRWWKIFSTEQCDAINKLVCYFTLPLFTFDFTSHIDPFHLNFPFIAADAISKLLIVVVLAFWARCTPKGSYCW

Query:  SITSFSLSTLTNSLVVGVPLAKVMYGQMAVDLVVQ
        SITSFSLSTLTN+LV+GVPLAKVMYGQMAVDLVVQ
Subjt:  SITSFSLSTLTNSLVVGVPLAKVMYGQMAVDLVVQ

XP_022149923.1 auxin efflux carrier component 5 [Momordica charantia]2.7e-7099.26Show/hide
Query:  MIGWEDAYKVVAAMAPLYFALALGYGSVRWWKIFSTEQCDAINKLVCYFTLPLFTFDFTSHIDPFHLNFPFIAADAISKLLIVVVLAFWARCTPKGSYCW
        MIGWEDAYKVVAAMAPLYFALALGYGSVRWWKIFSTEQCDAINKLVCYFTLPLFTFDFTSHIDPFHLNFPFIAADAISKLLIVVVLAFWARCTPKGSYCW
Subjt:  MIGWEDAYKVVAAMAPLYFALALGYGSVRWWKIFSTEQCDAINKLVCYFTLPLFTFDFTSHIDPFHLNFPFIAADAISKLLIVVVLAFWARCTPKGSYCW

Query:  SITSFSLSTLTNSLVVGVPLAKVMYGQMAVDLVVQ
        SITSFSLSTLTNSLVVGVPLAK+MYGQMAVDLVVQ
Subjt:  SITSFSLSTLTNSLVVGVPLAKVMYGQMAVDLVVQ

XP_022937707.1 auxin efflux carrier component 5 [Cucurbita moschata]1.3e-6489.63Show/hide
Query:  MIGWEDAYKVVAAMAPLYFALALGYGSVRWWKIFSTEQCDAINKLVCYFTLPLFTFDFTSHIDPFHLNFPFIAADAISKLLIVVVLAFWARCTPKGSYCW
        MIGWED +KV++AMAPLYFAL LGYGSV+WWKIFSTEQCDAINKLVCYFTLPLFTF+FTSHIDPFHLNFPFIAADAISKL+IV+VLAFWA+C+ KGSYCW
Subjt:  MIGWEDAYKVVAAMAPLYFALALGYGSVRWWKIFSTEQCDAINKLVCYFTLPLFTFDFTSHIDPFHLNFPFIAADAISKLLIVVVLAFWARCTPKGSYCW

Query:  SITSFSLSTLTNSLVVGVPLAKVMYGQMAVDLVVQ
        SITSFSLSTLTN+LV+GVPLAKVMYGQMAVDLVVQ
Subjt:  SITSFSLSTLTNSLVVGVPLAKVMYGQMAVDLVVQ

XP_038889666.1 auxin efflux carrier component 5 [Benincasa hispida]4.4e-6590.37Show/hide
Query:  MIGWEDAYKVVAAMAPLYFALALGYGSVRWWKIFSTEQCDAINKLVCYFTLPLFTFDFTSHIDPFHLNFPFIAADAISKLLIVVVLAFWARCTPKGSYCW
        MIGWED YKVV+AMAPLYFAL LGYGSV+WWKIFST+QCDAINKLVCYFTLPLFTFDFTSHIDPFHLNFPFI ADAI KL+IV+VLAFWA+CT KGSYCW
Subjt:  MIGWEDAYKVVAAMAPLYFALALGYGSVRWWKIFSTEQCDAINKLVCYFTLPLFTFDFTSHIDPFHLNFPFIAADAISKLLIVVVLAFWARCTPKGSYCW

Query:  SITSFSLSTLTNSLVVGVPLAKVMYGQMAVDLVVQ
        SITSFSLSTLTN+LV+GVPLAKVMYGQMAVDLVVQ
Subjt:  SITSFSLSTLTNSLVVGVPLAKVMYGQMAVDLVVQ

TrEMBL top hitse value%identityAlignment
A0A0A0LH23 Auxin efflux carrier component6.2e-6590.98Show/hide
Query:  MIGWEDAYKVVAAMAPLYFALALGYGSVRWWKIFSTEQCDAINKLVCYFTLPLFTFDFTSHIDPFHLNFPFIAADAISKLLIVVVLAFWARCTPKGSYCW
        MIGW+D YKVVAAMAPLYFAL LGYGSV+WWKIFST+QCDAINKLVCYFTLPLFTFDFTSHIDPFHLNFPFIAADAI KL+IV+VLAFWA+CT KGSYCW
Subjt:  MIGWEDAYKVVAAMAPLYFALALGYGSVRWWKIFSTEQCDAINKLVCYFTLPLFTFDFTSHIDPFHLNFPFIAADAISKLLIVVVLAFWARCTPKGSYCW

Query:  SITSFSLSTLTNSLVVGVPLAKVMYGQMAVDLV
        SITSFSLSTLTN+LV+GVPLAKVMYGQMAVDLV
Subjt:  SITSFSLSTLTNSLVVGVPLAKVMYGQMAVDLV

A0A5A7U3L3 Putative auxin efflux carrier component 81.2e-6590.44Show/hide
Query:  MIGWEDAYKVVAAMAPLYFALALGYGSVRWWKIFSTEQCDAINKLVCYFTLPLFTFDFTSHIDPFHLNFPFIAADAISKLLIVVVLAFWARCTPKGSYCW
        MIGWED YKVVAAMAPLYFAL LGYGSV+WWKIFST+QCDAINKLVCYFTLPLFTF+FTSHIDPFHLNFPFIAADAI KLLIV+VLAFW +CT KGSYCW
Subjt:  MIGWEDAYKVVAAMAPLYFALALGYGSVRWWKIFSTEQCDAINKLVCYFTLPLFTFDFTSHIDPFHLNFPFIAADAISKLLIVVVLAFWARCTPKGSYCW

Query:  SITSFSLSTLTNSLVVGVPLAKVMYGQMAVDLVVQA
        SITSFSLSTLTN+LV+GVPLAKVMYG+MAVDLVVQA
Subjt:  SITSFSLSTLTNSLVVGVPLAKVMYGQMAVDLVVQA

A0A6J1D820 Auxin efflux carrier component1.3e-7099.26Show/hide
Query:  MIGWEDAYKVVAAMAPLYFALALGYGSVRWWKIFSTEQCDAINKLVCYFTLPLFTFDFTSHIDPFHLNFPFIAADAISKLLIVVVLAFWARCTPKGSYCW
        MIGWEDAYKVVAAMAPLYFALALGYGSVRWWKIFSTEQCDAINKLVCYFTLPLFTFDFTSHIDPFHLNFPFIAADAISKLLIVVVLAFWARCTPKGSYCW
Subjt:  MIGWEDAYKVVAAMAPLYFALALGYGSVRWWKIFSTEQCDAINKLVCYFTLPLFTFDFTSHIDPFHLNFPFIAADAISKLLIVVVLAFWARCTPKGSYCW

Query:  SITSFSLSTLTNSLVVGVPLAKVMYGQMAVDLVVQ
        SITSFSLSTLTNSLVVGVPLAK+MYGQMAVDLVVQ
Subjt:  SITSFSLSTLTNSLVVGVPLAKVMYGQMAVDLVVQ

A0A6J1FBZ5 Auxin efflux carrier component6.2e-6589.63Show/hide
Query:  MIGWEDAYKVVAAMAPLYFALALGYGSVRWWKIFSTEQCDAINKLVCYFTLPLFTFDFTSHIDPFHLNFPFIAADAISKLLIVVVLAFWARCTPKGSYCW
        MIGWED +KV++AMAPLYFAL LGYGSV+WWKIFSTEQCDAINKLVCYFTLPLFTF+FTSHIDPFHLNFPFIAADAISKL+IV+VLAFWA+C+ KGSYCW
Subjt:  MIGWEDAYKVVAAMAPLYFALALGYGSVRWWKIFSTEQCDAINKLVCYFTLPLFTFDFTSHIDPFHLNFPFIAADAISKLLIVVVLAFWARCTPKGSYCW

Query:  SITSFSLSTLTNSLVVGVPLAKVMYGQMAVDLVVQ
        SITSFSLSTLTN+LV+GVPLAKVMYGQMAVDLVVQ
Subjt:  SITSFSLSTLTNSLVVGVPLAKVMYGQMAVDLVVQ

A0A6J1HQQ5 Auxin efflux carrier component2.3e-6489.63Show/hide
Query:  MIGWEDAYKVVAAMAPLYFALALGYGSVRWWKIFSTEQCDAINKLVCYFTLPLFTFDFTSHIDPFHLNFPFIAADAISKLLIVVVLAFWARCTPKGSYCW
        MIGWED +KV++AMAPLYFAL LGYGSV+WWKIFSTEQCDAINKLVCYFTLPLFTFDFTSHIDPFHLNF FIAADAISKL+IV+VLAFWA+C+ KGSYCW
Subjt:  MIGWEDAYKVVAAMAPLYFALALGYGSVRWWKIFSTEQCDAINKLVCYFTLPLFTFDFTSHIDPFHLNFPFIAADAISKLLIVVVLAFWARCTPKGSYCW

Query:  SITSFSLSTLTNSLVVGVPLAKVMYGQMAVDLVVQ
        SITSFSLSTLTN+LV+GVPLAKVMYGQMAVDLVVQ
Subjt:  SITSFSLSTLTNSLVVGVPLAKVMYGQMAVDLVVQ

SwissProt top hitse value%identityAlignment
D5A7J3 Probable auxin efflux carrier component 5b6.6e-4056.76Show/hide
Query:  MIGWEDAYKVVAAMAPLYFALALGYGSVRWWKIFSTEQCDAINKLVCYFTLPLFTFDFTSHIDPFHLNFPFIAADAISKLLIVVVLAFWA-----RCTPK
        MIGW D YKVVAAMAPLYFAL LGYGSVRWW++F+ +QCDA+N+LV  F +P F FDF + IDPF L++  +AADA+SKL + + LA  A     RC   
Subjt:  MIGWEDAYKVVAAMAPLYFALALGYGSVRWWKIFSTEQCDAINKLVCYFTLPLFTFDFTSHIDPFHLNFPFIAADAISKLLIVVVLAFWA-----RCTPK

Query:  --------GSYCWSITSFSLSTLTNSLVVGVPLAKVMYGQMAVDLVVQ
                G + W IT FSL+TL N+LVVGVPL   MYG+ A DL+VQ
Subjt:  --------GSYCWSITSFSLSTLTNSLVVGVPLAKVMYGQMAVDLVVQ

Q5JLM1 Probable auxin efflux carrier component 5a1.6e-4667.15Show/hide
Query:  MIGWEDAYKVVAAMAPLYFALALGYGSVRWWKIFSTEQCDAINKLVCYFTLPLFTFDFTSHIDPFHLNFPFIAADAISKLLIVVVLAFWARCTPKG--SY
        MIGW D YKVVAA  PLYFAL LGYGSVRWW+IF+ EQCDA+N+LV +F LP FTF+FT H DPF +N+  +AAD ISK +IV V+  WAR   KG  + 
Subjt:  MIGWEDAYKVVAAMAPLYFALALGYGSVRWWKIFSTEQCDAINKLVCYFTLPLFTFDFTSHIDPFHLNFPFIAADAISKLLIVVVLAFWARCTPKG--SY

Query:  CWSITSFSLSTLTNSLVVGVPLAKVMYGQMAVDLVVQ
         WSITSFSLSTLTNSLVVGVP+A+ MYG+ A  LVVQ
Subjt:  CWSITSFSLSTLTNSLVVGVPLAKVMYGQMAVDLVVQ

Q6ZIB5 Probable auxin efflux carrier component 5c1.6e-4159.57Show/hide
Query:  MIGWEDAYKVVAAMAPLYFALALGYGSVRWWKIFSTEQCDAINKLVCYFTLPLFTFDFTSHIDPFHLNFPFIAADAISKLLIVVVLAFWAR------CTP
        MIGW D YKVV AMAPLYFAL LGYGSVRWW+ F+ EQC AIN +V YF++P FTFDF    DPF +N+  IAADA+SK + +  +A WAR         
Subjt:  MIGWEDAYKVVAAMAPLYFALALGYGSVRWWKIFSTEQCDAINKLVCYFTLPLFTFDFTSHIDPFHLNFPFIAADAISKLLIVVVLAFWAR------CTP

Query:  KGSYCWSITSFSLSTLTNSLVVGVPLAKVMYGQMAVDLVVQ
         G+  WSIT FSL+ L N+LVVGVPL   MYG+ A DLVVQ
Subjt:  KGSYCWSITSFSLSTLTNSLVVGVPLAKVMYGQMAVDLVVQ

Q8RWZ6 Auxin efflux carrier component 41.7e-3552.55Show/hide
Query:  MIGWEDAYKVVAAMAPLYFALALGYGSVRWWKIFSTEQCDAINKLVCYFTLPLFTFDFTSHIDPFHLNFPFIAADAISKLLIVVVLAFWARCTPKGSYCW
        MI W D Y V+ A+ PLY A+ L YGSV+WWKIFS +QC  IN+ V  F +PL +F F S  DP+ +NF F+AAD + K++++V+LA WA  T  GS  W
Subjt:  MIGWEDAYKVVAAMAPLYFALALGYGSVRWWKIFSTEQCDAINKLVCYFTLPLFTFDFTSHIDPFHLNFPFIAADAISKLLIVVVLAFWARCTPKGSYCW

Query:  SITSFSLSTLTNSLVVGVPLAKVMYGQMAVDLVVQAM
         IT FSLSTL N+LV+G+PL   MYG  A  L+VQ +
Subjt:  SITSFSLSTLTNSLVVGVPLAKVMYGQMAVDLVVQAM

Q9FFD0 Auxin efflux carrier component 52.3e-5372.79Show/hide
Query:  MIGWEDAYKVVAAMAPLYFALALGYGSVRWWKIFSTEQCDAINKLVCYFTLPLFTFDFTSHIDPFHLNFPFIAADAISKLLIVVVLAFWARCTPKGSYCW
        MI   D YKV+ AM PLY AL LGYGSV+WW IF+ +QCDAIN+LVCYFTLPLFT +FT+H+DPF++N+ FIAAD +SK++IV VLA WA+ + KGSYCW
Subjt:  MIGWEDAYKVVAAMAPLYFALALGYGSVRWWKIFSTEQCDAINKLVCYFTLPLFTFDFTSHIDPFHLNFPFIAADAISKLLIVVVLAFWARCTPKGSYCW

Query:  SITSFSLSTLTNSLVVGVPLAKVMYGQMAVDLVVQA
        SITSFSL TLTNSLVVGVPLAK MYGQ AVDLVVQ+
Subjt:  SITSFSLSTLTNSLVVGVPLAKVMYGQMAVDLVVQA

Arabidopsis top hitse value%identityAlignment
AT1G23080.1 Auxin efflux carrier family protein1.7e-3552.59Show/hide
Query:  MIGWEDAYKVVAAMAPLYFALALGYGSVRWWKIFSTEQCDAINKLVCYFTLPLFTFDFTSHIDPFHLNFPFIAADAISKLLIVVVLAFWARCTPKGSYCW
        MI W D Y V+ A+ PLY A+ L YGSVRWWKIFS +QC  IN+ V  F +PL +F F S  +P+ +N  FIAAD + KL+++ +L  WA  T  GS  W
Subjt:  MIGWEDAYKVVAAMAPLYFALALGYGSVRWWKIFSTEQCDAINKLVCYFTLPLFTFDFTSHIDPFHLNFPFIAADAISKLLIVVVLAFWARCTPKGSYCW

Query:  SITSFSLSTLTNSLVVGVPLAKVMYGQMAVDLVVQ
        SIT FSLSTL N+LV+G+PL   MYG+ +  L+VQ
Subjt:  SITSFSLSTLTNSLVVGVPLAKVMYGQMAVDLVVQ

AT1G23080.2 Auxin efflux carrier family protein1.7e-3552.59Show/hide
Query:  MIGWEDAYKVVAAMAPLYFALALGYGSVRWWKIFSTEQCDAINKLVCYFTLPLFTFDFTSHIDPFHLNFPFIAADAISKLLIVVVLAFWARCTPKGSYCW
        MI W D Y V+ A+ PLY A+ L YGSVRWWKIFS +QC  IN+ V  F +PL +F F S  +P+ +N  FIAAD + KL+++ +L  WA  T  GS  W
Subjt:  MIGWEDAYKVVAAMAPLYFALALGYGSVRWWKIFSTEQCDAINKLVCYFTLPLFTFDFTSHIDPFHLNFPFIAADAISKLLIVVVLAFWARCTPKGSYCW

Query:  SITSFSLSTLTNSLVVGVPLAKVMYGQMAVDLVVQ
        SIT FSLSTL N+LV+G+PL   MYG+ +  L+VQ
Subjt:  SITSFSLSTLTNSLVVGVPLAKVMYGQMAVDLVVQ

AT2G01420.1 Auxin efflux carrier family protein1.2e-3652.55Show/hide
Query:  MIGWEDAYKVVAAMAPLYFALALGYGSVRWWKIFSTEQCDAINKLVCYFTLPLFTFDFTSHIDPFHLNFPFIAADAISKLLIVVVLAFWARCTPKGSYCW
        MI W D Y V+ A+ PLY A+ L YGSV+WWKIFS +QC  IN+ V  F +PL +F F S  DP+ +NF F+AAD + K++++V+LA WA  T  GS  W
Subjt:  MIGWEDAYKVVAAMAPLYFALALGYGSVRWWKIFSTEQCDAINKLVCYFTLPLFTFDFTSHIDPFHLNFPFIAADAISKLLIVVVLAFWARCTPKGSYCW

Query:  SITSFSLSTLTNSLVVGVPLAKVMYGQMAVDLVVQAM
         IT FSLSTL N+LV+G+PL   MYG  A  L+VQ +
Subjt:  SITSFSLSTLTNSLVVGVPLAKVMYGQMAVDLVVQAM

AT2G01420.2 Auxin efflux carrier family protein1.2e-3652.55Show/hide
Query:  MIGWEDAYKVVAAMAPLYFALALGYGSVRWWKIFSTEQCDAINKLVCYFTLPLFTFDFTSHIDPFHLNFPFIAADAISKLLIVVVLAFWARCTPKGSYCW
        MI W D Y V+ A+ PLY A+ L YGSV+WWKIFS +QC  IN+ V  F +PL +F F S  DP+ +NF F+AAD + K++++V+LA WA  T  GS  W
Subjt:  MIGWEDAYKVVAAMAPLYFALALGYGSVRWWKIFSTEQCDAINKLVCYFTLPLFTFDFTSHIDPFHLNFPFIAADAISKLLIVVVLAFWARCTPKGSYCW

Query:  SITSFSLSTLTNSLVVGVPLAKVMYGQMAVDLVVQAM
         IT FSLSTL N+LV+G+PL   MYG  A  L+VQ +
Subjt:  SITSFSLSTLTNSLVVGVPLAKVMYGQMAVDLVVQAM

AT5G16530.1 Auxin efflux carrier family protein1.7e-5472.79Show/hide
Query:  MIGWEDAYKVVAAMAPLYFALALGYGSVRWWKIFSTEQCDAINKLVCYFTLPLFTFDFTSHIDPFHLNFPFIAADAISKLLIVVVLAFWARCTPKGSYCW
        MI   D YKV+ AM PLY AL LGYGSV+WW IF+ +QCDAIN+LVCYFTLPLFT +FT+H+DPF++N+ FIAAD +SK++IV VLA WA+ + KGSYCW
Subjt:  MIGWEDAYKVVAAMAPLYFALALGYGSVRWWKIFSTEQCDAINKLVCYFTLPLFTFDFTSHIDPFHLNFPFIAADAISKLLIVVVLAFWARCTPKGSYCW

Query:  SITSFSLSTLTNSLVVGVPLAKVMYGQMAVDLVVQA
        SITSFSL TLTNSLVVGVPLAK MYGQ AVDLVVQ+
Subjt:  SITSFSLSTLTNSLVVGVPLAKVMYGQMAVDLVVQA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCGGGTGGGAAGATGCTTATAAGGTGGTGGCCGCCATGGCGCCATTGTACTTCGCCTTGGCGCTTGGCTATGGCTCTGTGAGGTGGTGGAAAATCTTCAGCACTGA
ACAGTGCGACGCCATTAACAAACTCGTCTGTTACTTCACTCTCCCTCTCTTCACCTTCGACTTCACTTCCCACATCGACCCTTTTCACCTGAACTTCCCTTTCATCGCCG
CCGACGCCATCTCGAAGCTCCTCATCGTCGTCGTTTTGGCCTTCTGGGCCAGATGCACCCCCAAAGGGAGCTATTGTTGGTCCATCACTAGCTTCTCCCTCTCCACTCTC
ACGAACTCGCTCGTTGTTGGCGTCCCGCTCGCCAAGGTCATGTATGGTCAGATGGCCGTGGACCTCGTCGTGCAGGCAATG
mRNA sequenceShow/hide mRNA sequence
ATGATCGGGTGGGAAGATGCTTATAAGGTGGTGGCCGCCATGGCGCCATTGTACTTCGCCTTGGCGCTTGGCTATGGCTCTGTGAGGTGGTGGAAAATCTTCAGCACTGA
ACAGTGCGACGCCATTAACAAACTCGTCTGTTACTTCACTCTCCCTCTCTTCACCTTCGACTTCACTTCCCACATCGACCCTTTTCACCTGAACTTCCCTTTCATCGCCG
CCGACGCCATCTCGAAGCTCCTCATCGTCGTCGTTTTGGCCTTCTGGGCCAGATGCACCCCCAAAGGGAGCTATTGTTGGTCCATCACTAGCTTCTCCCTCTCCACTCTC
ACGAACTCGCTCGTTGTTGGCGTCCCGCTCGCCAAGGTCATGTATGGTCAGATGGCCGTGGACCTCGTCGTGCAGGCAATG
Protein sequenceShow/hide protein sequence
MIGWEDAYKVVAAMAPLYFALALGYGSVRWWKIFSTEQCDAINKLVCYFTLPLFTFDFTSHIDPFHLNFPFIAADAISKLLIVVVLAFWARCTPKGSYCWSITSFSLSTL
TNSLVVGVPLAKVMYGQMAVDLVVQAM