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MS021999 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS021999
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionSister chromatid cohesion 1 protein
Genome locationscaffold110:1003874..1004011
RNA-Seq ExpressionMS021999
SyntenyMS021999
Gene Ontology termsGO:0007064 - mitotic sister chromatid cohesion (biological process)
GO:0007130 - synaptonemal complex assembly (biological process)
GO:1990414 - replication-born double-strand break repair via sister chromatid exchange (biological process)
GO:0000795 - synaptonemal complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0034990 - nuclear mitotic cohesin complex (cellular component)
GO:0034991 - nuclear meiotic cohesin complex (cellular component)
GO:0003682 - chromatin binding (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR006910 - Rad21/Rec8-like protein, N-terminal
IPR039781 - Rad21/Rec8-like protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF8097938.1 hypothetical protein N665_0279s0067 [Sinapis alba]3.1e-1593.48Show/hide
Query:  MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVGKLLF
        MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSV  +LF
Subjt:  MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVGKLLF

PPD76978.1 hypothetical protein GOBAR_DD26109 [Gossypium barbadense]1.4e-1597.78Show/hide
Query:  MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVGKLL
        MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVG LL
Subjt:  MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVGKLL

XP_011648986.1 sister chromatid cohesion 1 protein 4 isoform X2 [Cucumis sativus]3.1e-1593.48Show/hide
Query:  MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVGKLLF
        MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSV  +LF
Subjt:  MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVGKLLF

XP_017418510.1 PREDICTED: sister chromatid cohesion 1 protein 4 [Vigna angularis]3.1e-1593.48Show/hide
Query:  MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVGKLLF
        MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSV  +LF
Subjt:  MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVGKLLF

XP_018461360.1 PREDICTED: sister chromatid cohesion 1 protein 4-like isoform X2 [Raphanus sativus]3.1e-1593.48Show/hide
Query:  MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVGKLLF
        MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSV  +LF
Subjt:  MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVGKLLF

TrEMBL top hitse value%identityAlignment
A0A0G3D9Y6 XYh8Y (Fragment)1.5e-1593.48Show/hide
Query:  MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVGKLLF
        MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSV  +LF
Subjt:  MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVGKLLF

A0A1U8KRH2 sister chromatid cohesion 1 protein 4-like isoform X21.5e-1593.48Show/hide
Query:  MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVGKLLF
        MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSV  +LF
Subjt:  MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVGKLLF

A0A1U8MGE9 sister chromatid cohesion 1 protein 4-like isoform X21.5e-1593.48Show/hide
Query:  MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVGKLLF
        MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSV  +LF
Subjt:  MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVGKLLF

A0A5D1ZXH7 Rad21_Rec8_N domain-containing protein1.5e-1593.48Show/hide
Query:  MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVGKLLF
        MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSV  +LF
Subjt:  MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVGKLLF

A0A5D2A0A4 Uncharacterized protein1.5e-1593.48Show/hide
Query:  MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVGKLLF
        MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSV  +LF
Subjt:  MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVGKLLF

SwissProt top hitse value%identityAlignment
P30776 Cohesin subunit rad211.6e-0658.54Show/hide
Query:  MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSV
        MFYS+ IL+KKGPL  +W+AAH E+KL K Q   T I  SV
Subjt:  MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSV

Q19325 Sister chromatid cohesion protein 11.0e-0851.11Show/hide
Query:  MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVGKLL
        MFY+QF+LAKKGPL  +W+AAH E+KL K Q+ +TD+  ++ +++
Subjt:  MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVGKLL

Q8W1Y0 Sister chromatid cohesion 1 protein 44.1e-1893.48Show/hide
Query:  MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVGKLLF
        MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSV  +LF
Subjt:  MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVGKLLF

Q9FQ19 Sister chromatid cohesion 1 protein 32.5e-0747.83Show/hide
Query:  MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVGKLLF
        MFYS  +LA+KGPLGT+W AAH+ ++L+K+Q    +I  +V  ++F
Subjt:  MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVGKLLF

Q9FQ20 Sister chromatid cohesion 1 protein 29.4e-0751.11Show/hide
Query:  MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVGKLL
        MFYS  ++++KGPLG IW+AA+  +KL+K+QV  T I  SV ++L
Subjt:  MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVGKLL

Arabidopsis top hitse value%identityAlignment
AT3G59550.1 Rad21/Rec8-like family protein1.8e-0847.83Show/hide
Query:  MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVGKLLF
        MFYS  +LA+KGPLGT+W AAH+ ++L+K+Q    +I  +V  ++F
Subjt:  MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVGKLLF

AT5G05490.2 Rad21/Rec8-like family protein1.5e-0448.65Show/hide
Query:  MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDI
        MFYS  +LA+K PLG IW+AA L  K+ + ++   DI
Subjt:  MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDI

AT5G16270.1 sister chromatid cohesion 1 protein 42.9e-1993.48Show/hide
Query:  MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVGKLLF
        MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSV  +LF
Subjt:  MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVGKLLF

AT5G40840.1 Rad21/Rec8-like family protein6.7e-0851.11Show/hide
Query:  MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVGKLL
        MFYS  ++++KGPLG IW+AA+  +KL+K+QV  T I  SV ++L
Subjt:  MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVGKLL

AT5G40840.2 Rad21/Rec8-like family protein6.7e-0851.11Show/hide
Query:  MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVGKLL
        MFYS  ++++KGPLG IW+AA+  +KL+K+QV  T I  SV ++L
Subjt:  MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVGKLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTATTCTCAATTCATATTGGCCAAGAAAGGGCCGCTTGGGACAATATGGATAGCGGCACATTTGGAGAGGAAGCTGCGAAAAAATCAAGTGGCGGACACTGATAT
TGGGGTCTCAGTTGGTAAGTTGCTTTTT
mRNA sequenceShow/hide mRNA sequence
ATGTTCTATTCTCAATTCATATTGGCCAAGAAAGGGCCGCTTGGGACAATATGGATAGCGGCACATTTGGAGAGGAAGCTGCGAAAAAATCAAGTGGCGGACACTGATAT
TGGGGTCTCAGTTGGTAAGTTGCTTTTT
Protein sequenceShow/hide protein sequence
MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVGKLLF