; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS022016 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS022016
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNA-directed DNA polymerase reverse transcriptase family protein
Genome locationscaffold47:16632..16913
RNA-Seq ExpressionMS022016
SyntenyMS022016
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AFP55557.1 non-ltr retroelement reverse transcriptase [Rosa rugosa]1.8e-2253.19Show/hide
Query:  GLDFRDLEHFNRSVLAKHDWRFFSDPSSFLALILKHKYFKMCGFLEAKLGSSASFLWQSLIWGRDLLRAGLRWRVGNGEGVRIYADGWIPLAPS
        GL FRDL  FN+++L K  WR    P S +A +LK KYF    F+EA+LGSS S+LW+S +WGR+LLR G+RWR+G+G+ VR++ D W+P  PS
Subjt:  GLDFRDLEHFNRSVLAKHDWRFFSDPSSFLALILKHKYFKMCGFLEAKLGSSASFLWQSLIWGRDLLRAGLRWRVGNGEGVRIYADGWIPLAPS
XP_016649695.1 PREDICTED: uncharacterized protein LOC107881115 [Prunus mume]1.7e-2358.24Show/hide
Query:  GLDFRDLEHFNRSVLAKHDWRFFSDPSSFLALILKHKYFKMCGFLEAKLGSSASFLWQSLIWGRDLLRAGLRWRVGNGEGVRIYADGWIPL
        GL FRDL+ FN+++LAK  WR F + +S  A I K +YF  C FLEA LG   S +W SLIWG+DLL+AGLRWRVGNGE + +Y D W+PL
Subjt:  GLDFRDLEHFNRSVLAKHDWRFFSDPSSFLALILKHKYFKMCGFLEAKLGSSASFLWQSLIWGRDLLRAGLRWRVGNGEGVRIYADGWIPL
XP_022150918.1 uncharacterized protein LOC111018954 [Momordica charantia]1.8e-2553.19Show/hide
Query:  GLDFRDLEHFNRSVLAKHDWRFFSDPSSFLALILKHKYFKMCGFLEAKLGSSASFLWQSLIWGRDLLRAGLRWRVGNGEGVRIYADGWIPLAPS
        G+ FRDLE FN+++LAK  WR  + P+S L+ +LK +YFK C F+EAK+  + S++W+S++WGRDLL+ GLRWR+GNG+ V IY D W+P  P+
Subjt:  GLDFRDLEHFNRSVLAKHDWRFFSDPSSFLALILKHKYFKMCGFLEAKLGSSASFLWQSLIWGRDLLRAGLRWRVGNGEGVRIYADGWIPLAPS
XP_022159001.1 uncharacterized protein LOC111025446 [Momordica charantia]6.8e-2553.19Show/hide
Query:  GLDFRDLEHFNRSVLAKHDWRFFSDPSSFLALILKHKYFKMCGFLEAKLGSSASFLWQSLIWGRDLLRAGLRWRVGNGEGVRIYADGWIPLAPS
        G+ FRDLE FN+++LAK  WR  ++P S LA +LK +YF+ C  L+A++  S SF+W+SL+WG +LL+ GLRWR+GNGE V +Y D W+P  PS
Subjt:  GLDFRDLEHFNRSVLAKHDWRFFSDPSSFLALILKHKYFKMCGFLEAKLGSSASFLWQSLIWGRDLLRAGLRWRVGNGEGVRIYADGWIPLAPS
XP_022159057.1 uncharacterized protein LOC111025497 [Momordica charantia]2.7e-2967.78Show/hide
Query:  GLDFRDLEHFNRSVLAKHDWRFFSDPSSFLALILKHKYFKMCGFLEAKLGSSASFLWQSLIWGRDLLRAGLRWRVGNGEGVRIYADGWIP
        GL FRDLE FN+++LAK  W+ FSDPSS LA +LK KYFK C F+EA +GS ASF+W+SL+WG DLLR GLRWRVGNG  +RIY D WIP
Subjt:  GLDFRDLEHFNRSVLAKHDWRFFSDPSSFLALILKHKYFKMCGFLEAKLGSSASFLWQSLIWGRDLLRAGLRWRVGNGEGVRIYADGWIP
TrEMBL top hitse value%identityAlignment
A0A6J1DAR4 uncharacterized protein LOC1110189548.6e-2653.19Show/hide
Query:  GLDFRDLEHFNRSVLAKHDWRFFSDPSSFLALILKHKYFKMCGFLEAKLGSSASFLWQSLIWGRDLLRAGLRWRVGNGEGVRIYADGWIPLAPS
        G+ FRDLE FN+++LAK  WR  + P+S L+ +LK +YFK C F+EAK+  + S++W+S++WGRDLL+ GLRWR+GNG+ V IY D W+P  P+
Subjt:  GLDFRDLEHFNRSVLAKHDWRFFSDPSSFLALILKHKYFKMCGFLEAKLGSSASFLWQSLIWGRDLLRAGLRWRVGNGEGVRIYADGWIPLAPS
A0A6J1DYS7 uncharacterized protein LOC1110254971.3e-2967.78Show/hide
Query:  GLDFRDLEHFNRSVLAKHDWRFFSDPSSFLALILKHKYFKMCGFLEAKLGSSASFLWQSLIWGRDLLRAGLRWRVGNGEGVRIYADGWIP
        GL FRDLE FN+++LAK  W+ FSDPSS LA +LK KYFK C F+EA +GS ASF+W+SL+WG DLLR GLRWRVGNG  +RIY D WIP
Subjt:  GLDFRDLEHFNRSVLAKHDWRFFSDPSSFLALILKHKYFKMCGFLEAKLGSSASFLWQSLIWGRDLLRAGLRWRVGNGEGVRIYADGWIP
A0A6J1E2L3 uncharacterized protein LOC1110254463.3e-2553.19Show/hide
Query:  GLDFRDLEHFNRSVLAKHDWRFFSDPSSFLALILKHKYFKMCGFLEAKLGSSASFLWQSLIWGRDLLRAGLRWRVGNGEGVRIYADGWIPLAPS
        G+ FRDLE FN+++LAK  WR  ++P S LA +LK +YF+ C  L+A++  S SF+W+SL+WG +LL+ GLRWR+GNGE V +Y D W+P  PS
Subjt:  GLDFRDLEHFNRSVLAKHDWRFFSDPSSFLALILKHKYFKMCGFLEAKLGSSASFLWQSLIWGRDLLRAGLRWRVGNGEGVRIYADGWIPLAPS
A0A803NJP4 Uncharacterized protein1.2e-2260Show/hide
Query:  GLDFRDLEHFNRSVLAKHDWRFFSDPSSFLALILKHKYFKMCGFLEAKLGSSASFLWQSLIWGRDLLRAGLRWRVGNGEGVRIYADGWIP
        GL FR L   N+++LAK  WR FS+P+S LA ILK KYFK+  FLEAKLG S S+ W SL+WGRDLL  GL W+VGNG  +R + D WIP
Subjt:  GLDFRDLEHFNRSVLAKHDWRFFSDPSSFLALILKHKYFKMCGFLEAKLGSSASFLWQSLIWGRDLLRAGLRWRVGNGEGVRIYADGWIP
J7G0Q7 Non-ltr retroelement reverse transcriptase8.9e-2353.19Show/hide
Query:  GLDFRDLEHFNRSVLAKHDWRFFSDPSSFLALILKHKYFKMCGFLEAKLGSSASFLWQSLIWGRDLLRAGLRWRVGNGEGVRIYADGWIPLAPS
        GL FRDL  FN+++L K  WR    P S +A +LK KYF    F+EA+LGSS S+LW+S +WGR+LLR G+RWR+G+G+ VR++ D W+P  PS
Subjt:  GLDFRDLEHFNRSVLAKHDWRFFSDPSSFLALILKHKYFKMCGFLEAKLGSSASFLWQSLIWGRDLLRAGLRWRVGNGEGVRIYADGWIPLAPS
SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657505.6e-0630.61Show/hide
Query:  GLDFRDLEHFNRSVLAKHDWRFFSDPSSFLALILKHKY----FKMCGFLEAKLGSSASFLWQSLIWG-RDLLRAGLRWRVGNGEGVRIYADGWIPLAP
        GL  R  +  NR++++K  WR   + +S   L+L+ KY     +   +L  K   S S  W+S+  G RD++  G+ W  G+G+ +R + D W+   P
Subjt:  GLDFRDLEHFNRSVLAKHDWRFFSDPSSFLALILKHKY----FKMCGFLEAKLGSSASFLWQSLIWG-RDLLRAGLRWRVGNGEGVRIYADGWIPLAP
P93295 Uncharacterized mitochondrial protein AtMg003105.6e-1438.14Show/hide
Query:  GLDFRDLEHFNRSVLAKHDWRFFSDPSSFLALILKHKYFKMCGFLEAKLGSSASFLWQSLIWGRDLLRAGLRWRVGNGEGVRIYADGWI----PLAP
        GL FRDL  FN+++LAK  +R    P + L+ +L+ +YF     +E  +G+  S+ W+S+I GR+LL  GL   +G+G   +++ D WI    PL P
Subjt:  GLDFRDLEHFNRSVLAKHDWRFFSDPSSFLALILKHKYFKMCGFLEAKLGSSASFLWQSLIWGRDLLRAGLRWRVGNGEGVRIYADGWI----PLAP
Arabidopsis top hitse value%identityAlignment
AT3G09510.1 Ribonuclease H-like superfamily protein2.9e-0536.67Show/hide
Query:  LKHKYFKMCGFLEAKLGSSASFLWQSLIWGRDLLRAGLRWRVGNGEGVRIYADGWIPLAP
        +K +YFK    L+AK+    S+ W SL+ G  LL+ G R  +G+G+ +RI  D  +   P
Subjt:  LKHKYFKMCGFLEAKLGSSASFLWQSLIWGRDLLRAGLRWRVGNGEGVRIYADGWIPLAP
AT4G29090.1 Ribonuclease H-like superfamily protein3.6e-1640.43Show/hide
Query:  GLDFRDLEHFNRSVLAKHDWRFFSDPSSFLALILKHKYFKMCGFLEAKLGSSASFLWQSLIWGRDLLRAGLRWRVGNGEGVRIYADGWIPLAPS
        G+ F+D+E FN ++L K  WR  S P S +A + K +YF     L A LGS  SF+W+S+   +++LR G R  VGNGE + I+   W+   P+
Subjt:  GLDFRDLEHFNRSVLAKHDWRFFSDPSSFLALILKHKYFKMCGFLEAKLGSSASFLWQSLIWGRDLLRAGLRWRVGNGEGVRIYADGWIPLAPS
ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein4.0e-1538.14Show/hide
Query:  GLDFRDLEHFNRSVLAKHDWRFFSDPSSFLALILKHKYFKMCGFLEAKLGSSASFLWQSLIWGRDLLRAGLRWRVGNGEGVRIYADGWI----PLAP
        GL FRDL  FN+++LAK  +R    P + L+ +L+ +YF     +E  +G+  S+ W+S+I GR+LL  GL   +G+G   +++ D WI    PL P
Subjt:  GLDFRDLEHFNRSVLAKHDWRFFSDPSSFLALILKHKYFKMCGFLEAKLGSSASFLWQSLIWGRDLLRAGLRWRVGNGEGVRIYADGWI----PLAP

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGTTTGGACTTTCGAGACCTAGAGCATTTTAATCGTTCTGTTCTTGCGAAACATGATTGGCGGTTTTTTAGTGATCCTTCATCCTTTCTTGCTCTGATTCTGAAACATAA
ATATTTTAAGATGTGTGGTTTCCTTGAAGCCAAATTGGGTTCGTCAGCCTCTTTTCTTTGGCAAAGTCTCATTTGGGGGCGAGATCTTCTTCGGGCTGGGCTTCGCTGGC
GTGTGGGTAATGGCGAAGGGGTCCGGATCTATGCTGATGGGTGGATCCCTCTTGCTCCGTCC
mRNA sequenceShow/hide mRNA sequence
GGTTTGGACTTTCGAGACCTAGAGCATTTTAATCGTTCTGTTCTTGCGAAACATGATTGGCGGTTTTTTAGTGATCCTTCATCCTTTCTTGCTCTGATTCTGAAACATAA
ATATTTTAAGATGTGTGGTTTCCTTGAAGCCAAATTGGGTTCGTCAGCCTCTTTTCTTTGGCAAAGTCTCATTTGGGGGCGAGATCTTCTTCGGGCTGGGCTTCGCTGGC
GTGTGGGTAATGGCGAAGGGGTCCGGATCTATGCTGATGGGTGGATCCCTCTTGCTCCGTCC
Protein sequenceShow/hide protein sequence
GLDFRDLEHFNRSVLAKHDWRFFSDPSSFLALILKHKYFKMCGFLEAKLGSSASFLWQSLIWGRDLLRAGLRWRVGNGEGVRIYADGWIPLAPS